Contig Data
morexGenes
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Map Locations of contig_1558013 (4477 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1558013

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_9885 3 4414 bp MLOC_9885.1 Available Available LOC_Os04g50830.1, FRAME:+1, EVALUE:0.0, 13104.m05165 protein retrotransposon protein, putative, LINE subclass





CDS Structure of MLOC_9885






Contig Sequence (4477 bp)

>contig_1558013 4477 assembly3_WGSMorex_rbca.fasta
AGTGTCCCATGGCTGCACCCACTTGTCATGCGTCGCCGCTCTCGCTTCTGCTCCAGCCCC
ACGTTCCGGAGGTCTGGGACGACGACATGGAGAAGGTAGCTTCCGATGCTCTGGGGCATG
AGGTGGCGCTCCTGCCACTTCATATGCAAGAGCCAAACGGGCAGCTGGGCCAGGCGGTCG
AGGCCCCATCCGACCCGACCTTGCTGGAGCTGGAGACGCCTTCCACGGAGCTCGAGTCTG
CGCCGGCCGAAACGCCTATTTTGAGCTCGGTGGAAGATCTCTTCGACAGGCCGCCTGTGC
CGCTCCTCCCGCGGCCTGCTGCGATCACACCACGTCCTCGACCAGCTGTGGCTGTGCCCC
CTTCTGAGGCACGTCGCAGCGAGCGCCTTCGTGCTAAGCCGGTGATGCACGCTATGGATA
AGGCGATACAAGTGCTCCTCAACAAAATGGGCTGTGATGCCGAAGGTTTGCCTCTGATTC
AAGCTAGGGAGAAGTACATCAGCAAGTTCAAGACTCAGCTGCCAGACAAGACCATTGAAG
GTCTAGCTATGCTTTTTAAGCTGAACGTTCGTAGCATCATGGATGCGGATAATGCGCTGA
TCGCCATGGGCGGTGCGGGTGGAGCTGATTCTAGCCTTCAGAAAGACTTTGCTTAGATGG
AGACCAGGTTATGGTTTCGTGGTTCGATGGCCCCTAGTTTTGGCATGTTTGTCTCAGTCT
TGATGTTATGCAATAGCTTTGGGGGCGGGCATGTCACCCCCGTTTTCATCTACTATCTGG
CTTTCTTTTCTGAGCTGCTAAGATGATCGGTCCCAACCTCAACGTGGCTGACTGGAACGT
TCGAGGCCTGAACGACCAAGCTCGCAAAGACACGGTCCACGCCTTTCTGTCAGACACTCC
CTGCCATATCGCGTGTCTTCAAGAGACCAAACTTGATTTCATAGATCAGCAAACTGCGGC
CTACATTGGTGGTTTTAAGCTCAGATCATTCGCTCACAAGCCAGCTGTTGGCACACGAGG
TGGTATTCTTCTTCTCTGGAATGAAGATCAAGTCTCTGTTACAAACGTTCACATTGGCAG
CTTTTTGATCTCCGCCCAGATCACCATCCGTGAGTGCAGCACCTCTTTTCTCCTCACCAC
AGTATATGGCCCTAGCGTTGACACAGATAAAGGAGCTTTTCTTGCCGAAATCATCGCCAC
TGCTCCCAACAACGATCAGAAATGGCTCATCCTTGGTGACTTTAACCTCATCCTTCAAGC
GGAAGACAAGAACAATGATAAGCTGAATCTTCGTCTCATGGGCCAGTTCAGGCGTGCTCT
GAATACTTGCCATCTCAAGGAGATAAAACTACAGAACAGGAAGTTCACCTGGAGCAATGA
AAGGGAGAACCCCACTCTCGAGAGGCTGGACCGCGCTTTTTGCAACCCGAGCTGGGATTT
GACTTTCGAAAGCCATGTCTTGTACGCTCTTTCGTCATCCTTGTCGGACCACTGCCCCCT
CCTCCTTTCCAACCAGAGTGGGCCCCGTAAACCTGCGACTTTCCGCTTTGAAACCTTCTG
GACTAAAATGCCGGGTTTCCAAGAGACGGTTCTACAGGCATGGTCAGCGCCCTCTTCTCA
CACTCAGCCGGTGCACGTAATCAACCACAAGCTCAAGACCACCGCGCTCAGCTTGCGATC
CTGGAGCAGGGGTCTCTTCTCTAACTGCAAGCTTCAGCTCTTCATGGCTCTGGAGGTCAT
TCTCCAGTTAGATGTCGCCCAGGATTCTCGCCCCCTGTCCACGGAAGAGAGGGCCCTCCG
TGCTGGCCTTAAAAGACGGATTCTAGGGTTGGTGGCCTTGGAACGCTCTAGAAAACGTCA
GGCCTCCAGAATCAACTATCTTCGCGATGGAGACGCCAACACAAAGTTCTTTCATCTGCG
GATTAACTCGAGGAAACGCAAGAACCATATCCAAAGGCTCAAACATAATGATGGTTGGCT
GGCAACACATGAAGATAAGGAGAACGTCATTCTCGAACACTTCTCCAAGACCTTGGGTCG
CCCTCCCCTCCGGCAGCTAGACTTCAATTGGATGGTCGTTGATCCTAGCACCCATGCTTT
GGAAGATCTCGACCTCCCCTTCTCTGAGTTGGAAATTAAGGAGGCGATCGATGATATGCC
TTCAGAAAAGGCCCCCGGCCCCGATGGATTTTCCATTGCTTTCTTTCAATCATGCTGGGA
TATTGTCAAAGATGATCTCATGAGGGCCATCACTTCTTTCTCCGAGCAGTCAGCTTCTAA
TTTCGCCATCCTCAACACAGCTAACATCGTCCTCATTCCAAAGAAGGACGGTGCGGAAGC
CATCACGGATTTCAGGCCAATAAGCCTCATCCACGTGGTCCCGAAGATTATCGCTAAAGC
TATGGCTCGCCGGCTCGGTCCGAAGATGGATGCTATTGTTTCTCGCTGCCAAAGTGCCTT
CATCAAAACAAGAACCATACATGACAACTTTATGTATGTCAGAAACACCGCTCGCAGTCT
CCATCGCAGCAAAACTCCGGCTCTCCTCATAAAGCTGGACATTGCCAAAGCTTTCGACAC
AGTTCGCTGGGACTATCTACTCGACCTTCTGCGCCGTCTCGGCTTTCCTCCTAGATGGCG
TGCTCTGCTATCCAGCCTCTTCTCCTCGGCCACGTCTAGAGTAATCCTTAACGGTATCCC
CGGTAAGGACATTGCTCACGGCCGAGGACTTCGCCAAGGAGACCCGCTATCCCCCCTGCT
TTTCGATATCGCCATCGACCCGCTGCAACAAATTCTGGATAAAGCAACTGCGTCTGGTCT
GATGAGCGAAAGTCCTGGAGGTTCACAACATCCTCGGATCTCTCTTTACGCTGATGATGC
TGCCATCTTCATTGCCCCTTCGGTGCAGGATATATCCTGCCTGGCAAATATTCTTCAAGG
CTTCGGGGAGGTTACGGGCATGGTGACCAATGTGGCTAAGAGCTCTATTGCCCCAATTCG
CTGCTCCGATGTTGACCTCACCGCAGTTCTGGCAAACTTCTCGGCGGCTATCACCCAGTT
CCCTCTCAAGTATTTGGGGTTGCCCTTGTCGCTTGGTAGACTCAGAAGGACCGACCTTCA
GCCATACATTGATAAAGCTGCGTCAAGGTTGAACCCTCTGAAAGGAAGATTCCTAAATCG
GGCGGGGTGCTGCACTTATGTGAAATCTGTCCTTTCTTCCATGCCGATCTTCCTCCTGAC
CGCTATCAAAGTGGATAAAGGCTTCCTAAGGGCTATGGCCAAGATCTGTCGCGGTATGCT
ATGGGACTGCAAGGAATCTGTCAGCGGTGGGAAATGCAAGGTCAACTGGCAGAAGGTCTG
CCGCCCTAAGGAGCTTGGTGGATTGGGGATCCTAGATTTGGAAAGGTTCTCCCGCGCCCT
TAGACTTCGCTGGCTTTGGGACGAATGGAAGGCTCCTGAAAAACCTTGGGTAGGTTTTGA
AACTCCTAACGATGCCTCAGATAGACAGCTCTTCAACGCCGCGACTCGTGTTACTATCGG
GGATGGCAAGAAGGCCTCCTTTTGGTCTTCCTCATGGCTTGACGGCAAGCCACCGAAAGA
TATGGCACCTCTGATCTTCAAAGCTTCGAGGAGGAAAAACCGAACGGTCCATGATGCCCT
TACTGACCATACCTGGGTAGCGGATATTGCGGTGGAGGCCTTCACGGCAGAGCACATTGG
CCAGTTCGTCCAGCTATGGGATCTCATCTCAGATATCCAGCTCTCCCCAGATATAGAAGA
TTCCATCATCTGGACCCTCTCCCCAAATGGATGCTACTCTGCGAGCTCCGCCTATAAGGC
GCAGTTCATGACCGCGCTGCCTTGCTCCTTCGGCTCGATTGTCTGGAAAACGTGGGCGCC
TCCCAAATGCCGCTTCTTCGCTTGGCTCGCCGTCCAAAATCGCCTCTGGACCGCGGATCG
CCTGGCCAAACGTGGATGGCCACACCAGCCCTCCTGCCAGCTATGCCGGTGCTCCCCTGA
GACGGCGAGACACATGCTCTTTGAATGCCGTTACTCCAAGAGGATCTGGTCCGCGGCGGC
ATCCTGGCTCTCCTGCCCGGAATTACTGCTTAGCATGGGCTCTGGTCGCCCCAAGGTGGT
GGACTACTGGCAGGCCTTAGCTAGGTCGCCCTCTTCCTCTCCCAAAGGTCTAAAAACGGC
TATCATGCTCATCACCTGGGAAATCTGGAAGGAAAGAAATGAGAGAGTCTTCAACAAGAA
ATCCTCTCTGCCGGTGGTGGTCATGCACAAGATAAGAGAGGTAGCAAAAGATTGGATTCT
AGCGGGAGCAAAAAACCTGGCGGATCTTGTGGGCTGATCTGTTTGTTGTTTTTGTTTTTT
TCCTTTTCCTTTGGGATGGCCTAAGCCATCCCCACCTTGCTGTTGTTCTTGCTCCTTCTT
TATCAATATAAGGCAAAGCTTTTGCCTCGTTTCAAAA