morexGenes - Barley RNA-seq Database

Contig contig_1557960

Source Contig contig_1557960

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1557960 (7100 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1557960

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_9851	2	1133 bp	MLOC_9851.1	Available	Available	LOC_Os10g42420.1, FRAME:-3, EVALUE:2e-20, 13110.m03985 protein GTPase-activating protein, putative, expressed
MLOC_9850	3	2552 bp	MLOC_9850.1	Available	Available	LOC_Os02g46650.1, FRAME:+2, EVALUE:5e-65, 13102.m05237 protein ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed

CDS Structure of MLOC_9851

CDS Structure of MLOC_9850

Contig Sequence (7100 bp)

>contig_1557960 7100 assembly3_WGSMorex_rbca.fasta
GCGCCGCGCCGCGCCTCCCACCCCCCCATCCGTCGCGCGCCCCACCCCCCAAACCCCCGC
AAACCCCTAGCCCAGCTCCCATGGCCGCGGACGGCCGCGACGCCACCACCGTCGTCGCTC
CAATGCCGCGCCCGGAGGAGGAGCGCGAGCAGCCTCCCCGTGCCGCCGACGCCCCCGTCG
ACCCAATGCCGGCGTCGCCGCCGCCGCCGCTGGAGGAGGAGGAGGAGCAGCAGCAGCCAG
GGGAGCAGCCTGCCACCGCCGCGGACGCGGCCGTCGCTCCTATGCTGCCGACGCAGCAGC
CGGAGGAGAAGGAGGTGGAGGAGCCGGTGCCTGCCGCGCCGCTGCCCCAGCCGCTCGAAT
CGGTAGCCGCCGCCTTGCTGCGTGTTTACTCTAGTCCATGCTTGCCTCGCGCCCGATCTT
CTTCTATTTTGTCTGTTTAATTAGTCCTGTTCTATACGGTCGATCATCGCGGCAGTTTCG
ATCGCGCTTAGTTCCTCGCGGCGGGGCTTAATCGAGCGCTAATCCGCCGGAATATCTTGT
ATTTTGCTTCCCTTGCGCTCGACGCTTTAATTCCACTAGAGATATTTTGCCCGTCGCCGC
CGCCGCCGTGCGCTTGATTGGGTTGGCGTCGCGGCTATCTAGGTAGATTTCGAGTTCCTC
ACGCGTGTTTGCTTCGTTAGCTGTGCCTGTGTGCCCCTTTGATTACCCGTAGATAGGAAG
CTACTTGTGCGATTCCAACGTTTCAATTTCCCCAGATTAATTTCTACGGCTTCCCCCTTG
ATTTGGCACTAGGCTAGATGGTAGATTGATTTCACGTGTTCATCCTCGTTGTGGTTTGGT
GCGTATTTGATTTGTCTAGATTTGAATTTGGTGGCACCTCAAATTGCAATGCTGCTTATT
TCCGATATTAACATCACTAATCTGGCGCTTTGTTTCTGGGTGATCGGTTATTGCAGGGTC
TGGCTTCAGCCGACGAGGGGCATGTGGAGACCTCCCAGGTCAAGGTTCCAGGTCCAGCCC
ACGAGGGACACGAGGATACCTTGCAGAAGAAAAATACTTTCGAGGTTCCAGGTCCAGCCG
ACGAGGCAGACAAGGAAGCATCGTACGACAAAGATCCCTTCAAGGACAAAGATCCCTTCA
AGGTTCCAGGTCCAGCAGATGAGGATGACTGTGAGACCCGTCGAGACCGGAAGCCCTTGC
GGATTATGGGTCGAGCAGATGAGAGATACTACAAAGGGTTCTGGCCAGACCAACGTCTTG
AGGATGATGTATGCATTTGCTAATTTCAATTCTTGTTTGAATCTGCCGTTTTATTTGCTA
CTGGTACTGTGCGTCACATTTTGGTGTGCCAATTCTATCTAGTGCGTCACATGCACGCTC
CTATCTCCCACAAACTGGAAGCTCATGCACTCCAATATTTACATAGTAGCTAACATTTTA
GTTCTGTTTATTCTCCAGGATTTGGAGGATTCTTGTGGTTGTTCCACCTGTAGGAGGCCC
CGCTTTTGGATTCGTCATGAACAAAATGATCCTAGATATTATGATCATGAATTTCATCGT
GACGGAATTCGTCGGAACTGTTATCCGGATTGGCTACATGGAAATGGTTACCCTGATAGG
AATGGTTACCCAGGTTATCCTCATCGTGGCTACGGCTACCCAGTTGGACGATTTGATCAA
GGTTGTATGGATCTGTACAATCCGAAACTGATGGTAGGCGTAACCTATATGCTTCTTTTA
TACGATGTATATTGACTGTGTACTAGTCATGGTATTCCTGATAATGATAAGATATTGAAG
TAATTCATTTTACGCTATCATCCAAACATTCATGGCATTTCATTGTTTGCACTTGTGATA
TTTTGATATCTTAGTCTATTTGACTTGGACATTTTGTACTTTTGTCTTATGCCCTTGGAT
TCTTGGGATGACAAGCTTGTAGATACTCAATGCTGTTCTCGATACGAACTGACTCGTGGA
AAGAACGATTTCCCTGTGGTAAGCTAGACATGTGCAGCATTTTCATGCTTTGCGATGCTT
CGTTTCCTCTCAGATCAAGTAACTGTGTTTGTTTTACTTTTTGCGCTGCTTTCATAGGCT
GCCTCGCTAAGTAATCCTGAGAAGTGGATATGCTTTCTCAATTGTATTCTCCAGTGTGTA
GTTCACACGGTTCCCCTAGTGTCGAAGCTTCTGAAAGATCGTCACCTAGGTCCATGTCCT
AGTAAGTCATCTAGTTCAATCTACTGTCATTCTTCTAGTTTTTTTACCGTCGAGCATCTC
TTCATATCAACTGTTGTGTTTTCAATTGGGTTTTTTGATTTTTCTGTAGGTGGTTCTGAC
GAATTCTGCTGTTACTGCTCCCTACGGCACCATGCTTCTGAAGTTATCAGGCTCTCAGGA
GATGTTCTCTACGCCAGAAAGTTCGTCAAACGCCTCAAGTGTATGTTTGTTCGACTGAGC
CTTTAAAATTCCTTCCCATATGCTCATAAACTGCTTAAATTAGTGGTTCCTTTGCCTGTG
GTGTTGGTCGTGTGTAGCTGAGTGTTTGTCTGTTTAACTGAACTTTCAGTTTTTTCTGTG
TATACTTCATCGGCCACTTATATTATCAGAGATTCAAGTCTTGTTTAGCTATATTGTGTT
CGTTTAACCATTTCAGTTATTATATTCATATTTCTTGTTGCATACTTGGGCCATCCCTAT
GATATGTACTTAACTTAGTTTTCCATAAAATGGTTTGCAGCGATATTTCGAGATTTTGAG
CAGGGGCAACACCAAGATGCACATGAATTCCTCCGCTGCTTACTTGATAAATTAGATGAG
GTAACTGTCGCTCCCAGGTCTGAATCTGAAGAGCCCTCTTCTATTGTCAAGGAATTTTTT
GGGGGGCAACTGAAAAGCCAGGTGTGTGTCTACTGATCCTCACTACCAGTTACATCAGTA
TCGTTCTGACTTAGTCTATGATTGATAATTCACTGAAATGTTTTTGGTTTGCTCAGTTGA
ATTGTCCAAAGTGCAATCATTGCTCGGACAGATTGGAGTCTTTCCTTGACCTTAACCTGG
AGGTTAACCAAATGGACACTATCATGGATTCACTATCATCTTATACCAAAATTGAGGTTG
TTGAAGATTTCATTTGTGATGGATGCAAATCTCGTGTGAACATGGAAAAGCACCTCAAGG
TGGAGCAGGCTCCAGAAGTTCTTGTAATCCAGCTCAAACGGTTTCAAAATTTGGGGAGTG
ATATATCTAAGATTCATGACATGGTGAAGTATCAGTTAGAGCTGGATTTAAACCCCTTCA
TGAGCTCCCCTGATGACGTGAGTCCACTTTCTTCTAATTTGACCATATTTCCCAACCGCC
CAAGTATATGGCTGATGCACATTGTTGTTGCAGAAACCTCAATACTATGATTTGTATGGA
GTTGTAGAACACTGGGGTAACACAGCCAAGGGTCACTACGTTTGTTATATCCGTTCATCA
GAAACTGATTGGTTTCTCTTTGACGATGATAAGGTAATCTATCTACCGCTGGTAAATAAA
AAATTAACCTTTTGTTAAGTTACCTGGCTCTAAGCCTCTAACCCTCCACGGCGCAGATTG
GGAAAATGACTGAGGACAGGGTTTTGGAGAAAAAGGCATATGTTCTGTTCTATGTCAAGA
AAGGTTCATCCCCATGGTTCTCTACATTACTTGAGAAGAAGGAAATGTTGCTGTCGGATT
ATTTTGAAGAATTGGCGGGCAAAGGATTAGACGAGGATGGTGCTCCCCTTAAAGCGGGCA
GCTACAGTGGCAGTGGTAGTGACAGTGACAATGGCAGTGTTAAACAAGATGTCACGGAGC
ATTGCTTTTGTGGACCAGCAGAGAAAAATGAAGCTGGCCCCAGTTCGGCCGGCTTGTCAC
AAGGTGTCTCAAACGGCAGTACCCTTTGCAGTGTGCCTGACGAAAACGAAGTGGGTTGCA
GCCTACGTGGAGTACCATCTGGAGGAACACAGAAATCCACCTCCCTTACCCTATCAAGTG
TGGAAAATGGAAACGCTAGTGGGTTGTCGTTGCTGTTGGAGTACAAAGAAAAGTCCAGCC
ATGGCACCAGGGAAGCGAACCATAACGGACCATCGTCAGAGGTGCTTGATACAGGCTCCC
ATGGAGGGTCATCACAAGAGAATGGGAGAAACTGCAACCTACTCCGGTCATCATCACATA
AACATGAAGACTGCTGTCCTGAAAACTTGACCTTGCACAGTAAGTGTGTTCTTTCTCTGT
TAAAAGAAAACAAGCTGAAACTTACTCACATAAGTTTTCCACAACGGTCTCCCTGAGCCT
GCTCCTTCTATATGCAAAAAAGCAACAGCACAATAATAGTCTCTATATGTGTTTGTACGT
TGTGCTGGTTGTTGGTGTTTTATGTGGCTCGTCTCTTATTGTAGAAGAGGAAGAAGAAGA
TGGGATGATAGGCTCTTGTGATTCTCCTGCTGGATCGCCGCGCGGACGTGGGATTGATGG
CACTTCAAGGCTCGGAACAGTAGGCTCCAACTCCGACCGCACTACTAATGGCGAGTGCAA
TACTAAGTTCGTTTAGATTCAAGATACAAAATTGGCATGGTTTTATGCCAGGCTATTTCG
ATATTCCCCAAGACACCTTTTAGGGTTAGGCGGCTGTTTAACTGGCTTCTGTGTTTGTCG
CGCACATGTGAGCTCATGTGAGCAAAGGAAAATCAGATATAAACCATAGTCAATTCAGTC
CCCTTTTGTATATTAACTGGAAATCCACTCTTGTTTTTAAGTTTTTTAGCATTTTGAAAG
AAAAAGGCTGATAAACCCGTGCATGTCTTAACGTGTCCCTTAAAGCTTTATATTCTGTGT
GCGTCTTTATTTTGTTATACAGTTGTAATCTATGTTAGTTTACTCTCAATCAGTTGTGTC
CCGCTTGCAGATGTCGGAGTCGAGACCAGAGCAGGGAAGCGGATGAGAGCCCAGGCTGCA
ACAGCTGCAATGACGGCAAAGAAGCGGAAGACAAACGGGGGCATAAAATACTATCTACAG
AAGGCGAGGTTAGCAAGTGGTAGAGCCAGGAAAGGCAGGAGAAAGCGTAGGTAGAAGTGG
ACATCGCCTCATCTATATAAACTGCTCAAGTGCGTGTAGCTAATTACCCTTAGCTCAAGG
GTTGCGCAGTGCAGAAAGTAGACCAATGACACTGCAATTTTTGGACAGTTGTAACACATA
GGAGTACTCCAGTTTTACTTTGATGTATGCCTCAACTGGTGACTTCCAGCTTTGCATACG
GCAAGGACACGCCCGTACTGATAACCATATATGGTATGAAATGGTCATTACAAAGCAAAG
GCATTTCTTTGGTAGCACAGCACCCATTTGGTTCCCGCGGATAAGCAAATGCTAGCACGA
ATTTAGCCAGTAAATTAGTTAAGCATTCGCAATAAAATCCTCTTTCTTTCCTTCCCTACG
AGTTTAAGTTTTAAGATTCCTATGGACTCTTGAACAGATCCACCATCTGTTGTCATGTCC
TAACAATCAGGAGAGGCCGACTGCTGAAGACCTGTTATGTAAGTTCAGCTCAGAGGATCC
GATCAAGATCAGATATGATGTTGGATGCCATAGATGTCAGCTTCTTCCCGGTCTGCCCAG
CCATGCTCTTGAGAGAGGTCAAGTCCTGAGTGGCCTGCACGAGCCAACAGAGCATTAACG
CAAGTCCATCAAGGAAACCAGCCATGCTAGTATGCTCATGCCTCTCCAGTGTTACCTGGA
AGGAGATTCTGTTGATCAAATCCGAAGCACTCAGATCGGCATTAGAATTGTTCGCTTGTT
GGCCAAACAGATCAGCACTTGAAATGGCAGAGGATCCCTACATCAACGTATTACACATAG
TACAAATCAATCCGGATCTATCAAACAAGGTAAACTAGCAAAGCTGTGCAGTGCTGAAAA
CAGATTATTCACTTGTTAGGATCAAGCTCCCCGTCAATAAAAAACTGTGATGGAAACGCA
TACAAACAAAGTACTACTCCCTCCGTTCCTAAATATACAAGTCTTCTTAGAGGTTCCACT
AGGGGACTGCATACGGATGTATATAGACANNNNNNNNAGTGTAGATTCACTCATTTTACT
CCATATGTAGTCCCCTAGTGAAATCTNNNNNNNNNNNNNTATTTAGGAATGGAGGGAGTA
GTTATAAACACCAAAATGATGTAAATATAGGAGTACGAAAAGATCAAACGAACATCCCAG
GATAAAAAAAAACCAAGGGTGCAGGCCAGATCCATGGCATTGGGATTTGATCTAAACAAA
ATCCAGGAATAAGTTTATTATCATCTCAGATGCCCAGGAAACACGCAGTGATATACTTAC
AGAGAATTTTTGGAGCGAGATTTGACCCTCCTTTTCTAAATTGGCTTGATCACCGAAAAA
CTGAGAAGATGAAATAGACTTTGCATTTGAGAACTTCTGTCTTGCTTCACTACTTTCCTC
AACCTGGAGATCATTATTTCAGTCGGTTATTTCACAGGCTGGTTTAAAGCTGGATCTCGA
GACAAGAATATGTAAAACAAGACTACACTTCACTATCTGTAAACAATCATCTCATTTCCA
GAGGAAACACACTCAAATGCTTCATTATGCACAGATAGAAACCATCACGATCAGTAAGAA
TTTTCAGACAGGTCATTCAGAACTAAAGAACAATTACAGCAGAACTAAAAATTCTAGCAA
GGGATAAATCAGACAAGTCATTCAGCTTCAAAACTGCAAATTCTCTCAAAATGATGGAAC
ACAGCGAATATTCTACCACCTCAACATGCATTTTTAGACTTGTAATGTTGTTACCCTATT
ATCAGACATCAATGTGAACCAAGTCAATAGTGCTTCTGGAAAGCATGCTAGCTAGTTCAA
AGCATACCGCCACATAGAACTGGGTTAACCAAGAGTAGAACTGAACTAGAGACACATAAT
ATGTATCAAAAGAAATGCTTCCCCAAACAGTCCAAAGTTGGTTTAATGGTAAATCTTCCT
CTTTGGTGTCCTGAATTGACAGAGGCTAAAAATTTGTGCAAAATTAAGACAGTAAGGCCC
TGTTCGGAGACGCTCCGCTC