Contig Data
morexGenes
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Map Locations of contig_1557951 (5478 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1557951

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_9849 1 2918 bp MLOC_9849.1 Available Available LOC_Os11g28610.1, FRAME:-1, EVALUE:0.0, 13111.m02754 protein transporter family protein, putative, expressed
MLOC_9957 3 1091 bp MLOC_9957.3 Available Available LOC_Os08g35760.1, FRAME:-2, EVALUE:5e-125, 13108.m03751 protein Cupin domain containing protein, expressed





CDS Structure of MLOC_9849






CDS Structure of MLOC_9957






Contig Sequence (5478 bp)

>contig_1557951 5478 assembly3_WGSMorex_rbca.fasta
CTCCTCCACCGCCCCGAGCTCCGTCCACACCTCCGGCCTCCTCCATCGCGGGCTGTCGAA
GGTGAGCTCCCCTGCTCCGGATCCCTCTATCCCCTATTCTTCCATGCTTTTTTGTGGTGT
CGCTCACAATCGCATAACTAAGGCTAGGGGGTATGACCTTCTTATACGATAGAGTCCAGA
TCAAACTACCAACCATGATATAATTTGTCTGTTAACGGATCCTATCCGTCGAGTCCTCAA
TGCACGCGCTTATGAACAACGCGTCATAATAGAGTATAAGTTCCTCTAATTATGTAGATC
AACATTAGGGTCGTAATCTAGTTACATGATCTAGCTTCTTTAAATTATCAGCGTACCAGG
ATAGTCTTTCCAATATGTAAAATATATTGTATTCCACCGATAATTGAGAAGCTTCCTTAA
GCATGCAACACTTCAGTACATTCCAACAAGAATAACTCCATGCACATAACATATGTATAA
TTCCATACGAGGTATTCCGAATATTAGTGATAACAAGTATTTGAATATAGTTAAAGGATA
CATAATCCCGACATGGTCGGTGTGACTGATAGTAATATGCATCGGGACACATGTGACCAC
ATGTTATAAAGTTCACACAGAACCATTGAAAACCCCAGGGGCGATGCGAGAGGCGTGAGC
TCTCTGAGAAGCTCAGTTTTACCGAGCTGGATAGGTGGGAGGTGGTCCGGTCCAGAGCAG
TCCACGAGCAGGCCAAAAAGACCGCTCGGTACATCCTGCATGACGCCCCCCCTACCCATC
CACCCCCACACACCCAACACATACAACCCATGGGCGCCGGTAAAACAGAAAAGGAACAAG
GGCATTTGCGGGGATGGTAGTTTCGCCGTCTCCATCCATGTTGTCGTCCCCTGTGTTTTG
AATTTCGTCCGAAAAATGGATTTTGGCCGAATTTCGACCATCTCGGCCTCCGGCGATAAG
TACCTTTGGGTCGAAAAAAATAGTTTCCGATCAAATTTGGCAAATTTTAGTCAAATTTTG
GTCACAGTTTGGTTAAACTCCAGCCGAAATTTTTGAAAATGGCCGAAATTCGGCTATCTC
GGCCGGGGGCGAAAACAAATGACAAACCGAAAATCAAAGCTCTGGTTGTCCCTTTCATAA
ATACTGAAGGTAGAACGAGTGGCAGCATCAAGATGATAAACGCTCCGTTCCCTGTTTCCT
TGGCTATATAAATGGAAAATTATTCAGCACCAACCCTCACTCTATCTTTCAAAAAAAAGA
AAAAATCGCTCCATCTAAAAACGGAGAGGAAAAATCAGCACCAACCTATGTGAATTTTTT
ATCAATAATCCTAGACCTACATAATGTGGTTACATAATCTTATTTAAGCTTCGTAATCTA
ATTCTCCACCCTTATAACAAATGAGGCCTTTTCTTTCAGCAGAATGGAATGGTATATATA
GTAGCAGTAATAAAGCTTTAAAAGCAAACTCGACAACTATGAACAACAACGGATGCTGGA
GGCACCCCCGCATCTAATAAGTTGCTTGCAATATCCGCTCGTCCATAATTACTTATCGTA
TAAATGTATAAAAATGAATGTATCTAGTATTAAAATACATTTAATAAGTTTTCTTTTGTT
GAGAATACATACATTTAATAAATTGCTGTTGTTATAGTCACATGTTGTAAGTCGTCATGA
AAACAGTTGAAATCATGCGCACGGGCACGCTATTTGTACATTACAAAGTCACATGCAAGC
ACAAGCTACATCTCAAGGAGAAGAAGGAAGAAACAAAAACAAAAATGTGTGATAGTATCG
ACGGCCTTATGCCGCCATTTAATTTAAACTAATTAATATCATCAATAATATAATATGTCT
TTTTTTCCTTGGACGTCCAATGTTGGAATCGAAGTTTTGTGACATTAATTTTAGTGTAGC
ATCGCATCTATCTATGTCTTTGTTTTGCTCATATTGTCCGTGGTATATTGTTTATCCAAA
ATTATATAACACACACACACAAAAAAAAACATTTGTCACACAAACAAGACAAAATCAAAC
AAAATGTTACTCCTTCCGCAAATAATTAACCGCGTGACGAGATTCATTCTTCGTGGTCGA
GCTTTGGCATGCCCTTGGCACCGACGTTGAAGAACTCGGCGATGACCTCGAGCGGCAAAC
CCTTGGTCTCGGGCACCCGAAGCGCGACGAAGGCGAGAGCGACGCAGCAGACGGCGGCGT
AGATGGAGAAGACCCCGGCGAGCCCCAGGGAGTCGAGCATGACCGGCATGCTGTAGGTGA
CGGCGATGTCGCTGAGCCAGAAGGCCAGGGAGCAAATGGCGATGCACATCCCGCGCACCC
TCGTCGGGAAGATCTCCGAGCACAAGATGCCGGGGATGGGCCCGAACCCCATCACGAACG
TGCAGATGTAGACGATGACGCTCGTCGTCGACACGGCCGCGTGCACGGTGGCCGCCAAGG
GGAGCACGTCCGCCGTCACCAGGGACACTAGGGACACGATCAGCACCGGGATCGTCCAGA
GGAGGAGGCTCCGGCGGCCGGCCACGTCCATGAGCCGCATGGCCACGGCAATGGCCGGGA
GCATGAGGAGCGTGGTCAGGCCGGAGATGAGGATGGCGGCTGAGTCGGCGCTCAGGCCAA
GGCTGGCGAGGAGGACGCTGACGCCGGCCTGGTCAAGGATCTGCGGCGTGTAGTAGAGGA
TGCCGCTGATGCCGGAGAACTGTTGCAGGATCTGGATTGTCACACCGCACACCAGAGCGT
GCCGGACGCCCGGCTCCAGCAGCTCCCGCCACCGCGGCTTCTCTGCCGCCGGAGACGACG
CCGGGTGCACCATCGCTGGGCCCATCGGGGTGATCGGATCGTCCTGCTGCTGCTGCAGGT
GGTCGTTGGTGGCGGTGTAGAGCGCCGACTGGTTGACCAGCGCCGCCGCGTGCACGTGCT
GGCCGTCGCCGGCGCTGGGCTCCTCATGCAGGTACATCCTCTGGACGGCGTTCTGCCGCG
TGCCGTCCGGCGCGACACCCTCCGTCCACTTCCATGCGAGCTGCCACCCGCCGCCGATGC
CCATGGTGCTTGTTGTCTGTCCCATGCCGATCCCGCTACCGGTCATGCTGCTCTGCCCCC
GCATGTCCAGCAGCGGCGCGCGGATGCCATCGTCATCAACGTCGTCGTGTTCGCTGGCAC
CAGCAGCAATCTTGTCGTCATCATCGCTGGGCGCGGCGTTCTCCTCGTCCCAGTCCATGC
CTCCGTGGGCGCTGAGCATGCTCCCGAAGTTGGTGAAGAGGGTATTGCCGTTGCTGTCGG
CCGCTGGCTTCATGTCGTGGAGGCCGCCGAGGAGCGCGACGACGGGGTCCTGGAGGTGGT
CGAGCATGCTGCCCATCCGCGACAGCCCGGCGATGCTGCCGAGCAAGCTGCCCTGCCGCG
ACATGCCCATGCTGGAGAGCATGCTGCCTTGCCCGCCCAGCGGCACCGGCTGCGCCACCC
ACGACATCCCGCGCTCTGGCCCGTACAGCCTGAAGGTGGCATCAGCTTGGTCAACGTCGT
CGTCTTGGGGCGCCGGGCCGACGATGTACTCCTCGATGGCGGTTTCCCCGCCGGTGCCGA
GGCCCTCGGCGAGGAGCGCCATCTCGCCGTCAACGTCCTCCCGGCCCCTGAGCATCCGCA
GCACGGTCCGGGCCTCCTTCATCCTGCCCTTGCTCACCAGCCAGCGCGGCGACTCCGGGA
GGAAAAACACGGCGACGGCGACGTAGAGGAGCGACGGCAAGACGAGCACCCCCATCATGA
GCCGCCAGTTGGGGCTGGGCGCGAGCGTCATGGCGAACACCATGCAGTAGGAGAGAAACA
TGCCGGTGGAGCCCGTGAGCTGCGGGAGCGTGCTGAGCAGCCCCCTGACCTCGGGCGGCG
CGGTCTCGGAGATGTAGACGGGGACGAGGGTGACGGCGAGGCCGACGGCGAATCCGTCGA
CGAGGCGGGCGAGGAGGAGCACGCCGACGGTGGGGGACCAGAGCATGAGGAGCCCCGCGA
GCGCGTAGAGGAGGGAGGAGGCGACGAGCATGGGGCGGCGGCCGACGTGGTCGGAAAGCG
GGCCGGAGAAGGTGGTGATGAGGGTGGCGCCGATGAGGGAGGTGGCGACGACGAGGCCCT
GGAGCGCGGGCTGGGCGTCCAGGCCGAAGTCGCGCTTGATGTAGAGCAGCGATCCGGCGA
TGGTGGCGTTGTCCCACCCCTGCAGCATGTTGCCCAGCGCCGCCGCCAGCGCCACCAGCG
CCGCACCCCTCATCCTTTCCTTTCCTTTCCTTTCCTTTCCTTGGTAGCTGCTCGATCGTC
CGGCCGGCCGTCCAAGGAGAAGAAAATTAATGGCTGCTCGATCGATCGGAGACGATATCT
TAACGGATGGATGCAGAGCTAGCGCGATGTGTCATCATCTATATAACTTAATTACAAGTC
GTGCGGTGAGAAAGAAGAGATGGGAGGTAGGTGGAGGTGACGAGGCGGGAAGTCGTCGTC
GCCATGTTGTTTTTCCTTCCCTCCATTGATCATCGATCGTCTCCATCAAATTAAGAGGTG
CTCACCGACTACTTTCTTCACCAGCCTAGCCTAGCTAGCAAGTAGCAGTACAATTAAGCA
TATGTGGAAAAAAAGTGCGGATCTTGGATTTTTTTTTTTTTGGCAAATGATACTATGTCA
AGATATATGTTGCTAATTATTTTTCGGTTACAAATTCATGATTTCTTCATGGGTCCACGT
ACACTTGTTTAATGTTACAAAAATTGAAAAAAATGTATATTTGTGTATTCGGGATTGCTA
AATCTCACTCGACCGAGACTTCGTTAAGTCTTCCTCGACACTATATCCATGAGACCTCAT
CAAGGAAAAAAGTAGCCCACTACAAAATATAGTGAGGCCCTTCTTCAAGGAAAGTGTGCT
TCTCACAAAAAATGATGAAATTTCGTGAGATATTAGAAACTTTCTCAAGTTTTATCACAA
AAAATAGATTTTTTTGAACATTTTTTGAAATTAATACAATTTTACTGTTTGAGAAGCTCC
ATGTCCCTTCTTCAAATGCTACACAAGTTATAGCATACAGCCGGAAATTGATTTTGGCTC
CCGAGCTCCATGGAGGCCTTTAAATTTGAAACTCAAATTTCATGAAAATTCGTATTTTTA
TATTTCAAATTTTTTTGGAAAAAAATACAGGGATAAATGAAGGCGTAACACACATGTATG
TAAAATTTCAGAAAAGAATACAATAAAATGAGTGCTGTGCAAAAAAGACAAATCTGAGGC
TTTTTTACACATGACATATTCATCGTTTCAGGTCATGAATTTGTCTTTTTTGTGTAGATC
GTATTTTATGGTATTTTATTCTAAATTTTTACACACATACACATAACATCCTTTTTTACT
TGCATATTGTTTTTCAGATTTTTTTGAAACCAAAAAATTTGAATTTTGAATTATTCAAAA
ATTTCGGCCTCCATGGAG