morexGenes - Barley RNA-seq Database

Contig contig_154750

Source Contig contig_154750

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_154750 (2452 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_154750

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_9697	1	346 bp	MLOC_9697.1	Available	Available	None
MLOC_9698	1	557 bp	AK367199	Not available	Available	None
MLOC_9699	1	218 bp	MLOC_9699.1	Available	Available	LOC_Os04g02780.1, FRAME:-1, EVALUE:8e-36, 13104.m00194 protein amidase family protein, putative, expressed

CDS Structure of MLOC_9697

CDS Structure of MLOC_9698

CDS Structure of MLOC_9699

Contig Sequence (2452 bp)

>contig_154750 2452 assembly3_WGSMorex_rbca.fasta
ATATATACTGGGACCTGTTCAGGTAATGCAACTTTCAGACCAAATCCGTTGGAAAAAGTA
ACAAGATGTAGTTTGTTTGCAATAATCACCACATATGAAAGAATGCCAATTCCACATCCA
ATTGAGAGCCTTCCAAGGTCAAGCCACACAGAGTTCTACAAAAGAACATTATACAGAAAC
CAAGGAAATAAATTACAAGATGAACTACATAAAATAAGGAAGAATATTATACGGCAAAGT
TACAGTAGGAACTGAAATGCACACTGAAGTAGAGATACATAGAGAAAGGAGGGAGGGGAC
CTTATGCGGACCTGGAAAGAAGAAATAAATTTCAATGCACTGAACGTGTAGTAAACACAT
AAACTAAACACCACCTTGTAACCATGGAATAGTTTACCGTTCCACTATGATCCCCAGATA
GAAGAATACTCAAGGGCATATCAAACTGCAATGAAGTAATACATGCTCCACTTGATGTAT
TGTCTTCATGCTGTGAAATGATTAGCTGGTGAGTAGAATGAAGTCGAGCATAGCAGTTCG
TATAAAATTTTATATTTTTATCGTGGAACACTTAGCAAAACAGTTGTGATTTGAAGTTAT
CTGCTACTTTATCATAAAAATCTGCAGCAGAAGAGGACATGATGCATCCCAAAAGCTTAT
GGTTCCATCCATATGCCCAGTTATATAAAGACTCCTGGTCTTATGGATGTTGCTAAAACT
TGCAGAAATCTGACCTTTATTCTTCATTGAAAGCAACATGGATATTTGGAGGCCACTGAT
GAAAAATAATCCTGTCCATTAAAAAAGATGAAGTTGTTGGTCACAAACTTCTTAGTTGTT
TTGCGAGGCATATTTTACAAATCTATACATGCCTCATTAGTTATTGTTGTACGGTCACTT
GTGTAGAACTTTGCAACGTTGATGCCCGAATCACCATACGGTTGTTTCACAAATGAATGG
CTTGGAAGTGTTGGTGGTGATCTAGGCTGAGATTGAAGGAGGTAGCGCTCAATTTCTGAA
TCATCGTATAAACACATTTGACCAGATTTCAACAAGAGAACAAAAGCACTTTGTCTTTGC
TTATTTGGGTTGCTAAGGCCTATAACAAACTCCATTCCTTGACAAGCTTCTGTCAGGGGT
AATACCATCTTTACAATTCGAGATTCACTCTCTTCATTCAGAATCAGGACCCGCGTTCCG
AGAACACAAATGAAAAGTTGAACAAAGATGCATTTCTCACTGAGCAAAATACCAAGACAT
CTTATCCATGTAAACCGTCACGATATTTTTTAGAAAGAAACCGACTGTTCTAAGTTCAGG
CAATGCTTAGAAAATAAACCTTTTGTCTGGTTGCTTGAAAATAACAAATAATTTGTCGCC
ATTTGGGTGGGAATTTACTTTGAGTACCCATCAATTTCTAATTGTTCAAATCAGTCAGCC
CCAAAACCAGTAGATCATCCAGTCTAGATCGGTCCCTAGAAAATGTAATACTGAGAATAA
AAATCATACAAAGGCTTTCCTTATAGATCATGCAAAGACATAACATCATTCTTGAATGGA
ACTGCACATTAAAATAAAATCAGTATCTGATAACCTGATAGTTATTTAGTGATAGTCCTG
GCAGGCAGATATGATGAAATTTACTGCTCCAATTATTTGCAATCCGCTAAAGTTTGCTAA
GACATGATGTAAGTTTGAATAACAAAAAAGTCATTTTGCATGCACTTGAAAGTATGGCAG
GCCATCAGGAACATCATAAATATCAGAATATTTAACAAATATCTGAATGGGGGTGATATG
TGTAACTGCAAACTAACTAATATGTGTAAGCTGCCATATACTCCTGTGCTCTACTCTGCA
TCAACGGGATGCCAAGGATGAAGCTTCAGAAAACCTATACCCCTCTGCATTATCCTGCTC
TGCTCCAATCTGCAATGATGAGTTGGGAGTTCATGGTAGCTACTTACCGTCGAATACTTT
GGCCGCACAAGCATTGAGGATCTCGTAGGTGTGGTCGTCGTCAGAGGAGCCCAAGATCCT
GAAACAGTCAGCATGAATTATGACACGGCTCGGTTGTCGCAGCTCGGCATCGGTGGTGTC
GGTTGAGACCGGCAGCAACAACACGTCGCTCACACGGGACAATGTAGCTAGATCTCTGGC
AAACCATCCTGTGTAAGCAGAGACACAATGACATGGTTTCATAGAACTGAATAAACACTT
CAGCAGATGAATAATGTTGTGTGCTGAACATATGAATGAATGACAGTAGCACGGCTAGAC
TGGAATTACCGACAGTGTCGAACATCTGCACCATGGGGACGACGTTCTCGGCGGAGACCA
CTCCGTGGGAGGGGCGGAGGCCGAAGATGCCGCAGTATGCGGCAGGCACCCTGACGCTGC
CGCCGGTGTTGGTGCCGAGGGCGAAGTCGGCGAGGCTGGCGGCGACGGCGAC