morexGenes - Barley RNA-seq Database

Contig contig_153961

Source Contig contig_153961

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_153961 (1427 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_153961

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_9621	1	364 bp	MLOC_9621.1	Available	Available	LOC_Os03g08440.1, FRAME:+3, EVALUE:2e-28, 13103.m00970 protein ribosomal protein S2, putative, expressed

CDS Structure of MLOC_9621

Contig Sequence (1427 bp)

>contig_153961 1427 assembly3_WGSMorex_rbca.fasta
TCCTTCACAAAAAAACTCATTTTGCAACTAAGATTATGTTTTCTTGTGCATTTCTGCCGA
ATGTTGCAATTGCGTGACATTTCATGAGTGCACCTTTCCCGTCGAATGTTGCAGTTGCCT
GAAATTTCATTATTGCATTTTTTTGCTCATCTGCTATGTATTTTTCTCCCCAACACAAAT
TTATCTTCGAGAGAATCCTTGTTGGAATCTACTCCACCCATTCCACAATATAAGATGTTT
TATTATAGGACGGATGGAGTACATAGCAAAGATATGAGAATGCCAGCTGGTATGATAGTG
TTTGCTTGTTAATCTATTGATGATCCAACTCTTCACTCCAATGCACCCCGTCGAAAACGA
TTTTACTCTTTATGTAAACTAATACTCCCTCCATTTCAAAATAACTATCTTAAGTTTAGT
ACAATTTTATACTAGAGCCAGTATAAAGTTGAGACAGTTATTTTGGGACGGAGGGAGTAT
AAGAGTGTTTAGATCACTACTTTAGTTATCTACAAAAGCTCTTATATTAGTTTATACAGG
GAGTACTAATTATTATGTAAAGTAAAAGATTATATTCTCAATCAGATATGCATTTTTTTC
ACCGTGTCACCTAAAAAATTGACCTGGATATTTGTTATTGACAAAAAGACTTTGAAAATT
CATCTGGAATTTTTAAAAAGAATAGACATTTTTTAGGCAAAAAAGAACAAATTCGTGAGA
GAAAAGAAAGCAGGCCATATGTATAGTCACCAAGGAGCACTGTCATCTCATCTCACTACA
AAAGCCGACTAGGGTTTAGAGGCGCCGTAGATAAAAGCCCTCACCCCTCCCTCTCTCCCC
GCTCGCGCCGCCGCTCACACCCCTCCCGTCCCTCCTCTCCTTCCCGGCGCCACCCGGACG
CTCGAGTCCCCGGCCAACCATGGCTGCAACGGCTGGAGAAGCCCCGCGGGCGCTGTCCCA
GAAGGAGCAGGGCATACAGGTGATGCTCGCCACCGACGTCTACCTCGGCACCAAGAACTG
CGACTTCTAGATGGAGTGATACGCCTACAAGCGCCGCTCCGACGGTACGTGCACGCTTGG
AACCCTCTTCATCCCGCCGTTCGCCTGCGTTGCCTAGGTTCAATCGTCGTCTCCATGATC
TAGCCCTTCCCTCTATACTAGTTAGGGTGTCGATCTGCTCCAGATCATGATGCTTATCGG
TGTAGCTGGCGCAAAGTGATGATGCTTCTGTCCTTCTTTGAGATGAACTGTGGAGTGTGA
TGCGTCTATTCCTTGTTTGTGGTTCCTAGGCATCTACATCATCAACCTGGGCAAAGACAT
GGGAGAAGCTCAAGCTCGCGGCGAGGGTCATCGTCGCCATCGAGAACCCGCATGACATCA
TTGTCTAGTCCACCCGCCCCTACGGCCAGCGCGCCGTCCTCAAGTTC