morexGenes - Barley RNA-seq Database

Contig contig_151111

Source Contig contig_151111

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_151111 (1601 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_151111

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_9302	1	354 bp	MLOC_9302.1	Available	Available	None
MLOC_9301	1	492 bp	MLOC_9301.1	Available	Available	LOC_Os02g08120.2, FRAME:+3, EVALUE:2e-24, 13102.m00935 protein calmodulin binding protein, putative, expressed

CDS Structure of MLOC_9302

CDS Structure of MLOC_9301

Contig Sequence (1601 bp)

>contig_151111 1601 assembly3_WGSMorex_rbca.fasta
TAGTTACAGAATTCCAAGTATTTTTATGATTTTACTTCAGAAGTAGGAAAATAAGACTTA
ATGCGTTGGAAAAACTGAAACATTGATTTTTTATTTAAGGCTGGCCATAGTGGTGGTATC
TTAGCCGGTATCATGCACTCGGGAATAGCAAACATGCTGATGTGTCAGAGAATTAGAGAA
GATAGAGATGGGTAGAGTAACATAGGTAGATACCATATCATGTTAAATGTTATGCTACTT
TGTGTCATGCATGGCAATAAATAAGATCATATATGATACTACTCTATGATACTATGCATT
ATAAAGGTACTATCATACACTAGTATCATATGCATGATACTAGTATATGCATATGATACT
TCCCACTATGAGCAGCCTAAATATATACTCCCTCCATCCCATAATATAAGATCTTATTAC
ATAAAATATGTGAGTATATTGGATGTAATAAGGCCTTATATTATTGGACGGAGGGAGTAC
AGATTAAGCAAATGGTGTATGAAATATTTTATGATGTCACTGCGGAATAGCAGTTTCTGA
AAACCATATGTTTTGTTTCATCCATTGCAGGGACAAATGGTTCTATAGGGTACGATGGCA
ACCAGACAGCAACACAGTCTGTTCAGCTTCAGAGTTCATCTGCTAATGTGCCGGTGCCAT
ATGATGAGGCCTTTTCATTTTTGCCAGACGAGATGTTTTACATGCCATCTCCATTGCCAA
CCCTAGGCTTCGAAGGTGAGCCCAGCCATCCATCGGGCAAAGCCGTTGTTGGGTGGCTCA
AGATAAAGGCTGCTATGAAATGGGGAATATTTGTCAGGAAGAAAGCTGCGGAGAGAAGGG
CACGGATTGTTGAGCTGGATGATTAAGATCTTGGCGTTTGCTCACTGTTAGTTGAAATCT
CAAATACCAGCTGCTGTTGCTGCGAACTACTCCCTCCGTTTCTAAATATAAGTCTTTTTT
AGAGTTTCCACTAAAAAACTACATACGAATGTATATAGACATACATTAGAGTATAGATTC
TTACATTTTGCTCCGTATATAGTCTTCTAGTGGAATCTCTTCAAAGACTTATATTTAGGA
ACGGAGGGAGTAGTTCTTTGGCTCACATAGTTGTCGTGATTGCCATTGAAACTAGTTTTC
TGTAAATCTACAGCGAGTAGCTCTGCTATCTTGTAAAAAAAATGCCGACTCGCTTCCTTG
TATAATTTCAACATAAATTCTTGTTTAGTGTCTTTCCGTTTAGCTTAATTTGTGCAGAAT
ATTGCTGTAGAAGATGATGTGAATTGATGTGAACAGTATTACGTTTTTGTGTCTATTAAT
CGGTTGGGGTCCATAACTTCTGGAAGAACATGTTTGTAAGGCTCAGTAATTTTATTGAAG
CGGTGCATCGGCATTATGTTCTTGGCCTCTTTTGTCAAGTGATCAGTTGTTGCACTGAGC
ATGTCAGTTTTCCTTAATTAACCGAGCAATTTTTTTTCTTAATGAATGCAGGATAAAACT
CCGCCTATGTTGTCTCAGCATAGCCGGTCCCAAACCCGGGTAAAGGAGGAGGGTTGTGAT
AGGCGTGACGAGCCAACGTGAAAAACCCAGCCACTCTTATG