morexGenes - Barley RNA-seq Database

Contig contig_148712

Source Contig contig_148712

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_148712 (3558 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_148712

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_9052	1	536 bp	None	Not available	Available	None
MLOC_9053	1	845 bp	None	Available	Available	None
MLOC_9054	1	216 bp	MLOC_9054.1	Available	Available	None

CDS Structure of MLOC_9052

CDS Structure of MLOC_9053

CDS Structure of MLOC_9054

Contig Sequence (3558 bp)

>contig_148712 3558 assembly3_WGSMorex_rbca.fasta
AAAAACCCCCCCCCCCCCCCCCGGAGTTGCAGTGTGCTCCATCGCATCTCTCTCGACCGT
AGCAAGCTCCCCGTAGCAGCAATTTGGTCGGAGATGTTCATCTTGCTCACCTCCGGCAGC
TTGGCCGCCGCGGCCTCTCCGGTCAAATTCGTCGCAGTCGTGCCTGTCCATGCCAGCCTC
CTCCTCCTTCATCCCCTAGCGGCTAGTAGGTCCTTTCCCCTTCACCGCAAGTGCCGGGGA
CCACTGTCTGCAAAGCCCTCTCGGAGGCCGACGCCGCCGTCCGCCAAAGCCTGTGGCACC
GGCGCCTCCCGTCACTCCTGTGCCCCTGGAGACCACCGGGTGGACAGCGAGGACCTCTTC
GATCCATCCCCACGCCTTAGAGCCCGAGAGCTGTAGCGAGTCGCCGACGAGGATCACCGG
AGCGCCACCCTGGTTCTGCTACGGGAGGTAGAGGACAAACCCGACACGTGGACCCCACCT
ATCGGTGAGCCAGCCAAGTGCCCCAGTGGCGCAGCCTCTCCTGGTGCGTTTTCAGTGCAA
CAAAGGGTAGTTTCCCATAGCGTTTTTAGTGAATACGTTTTCTCTGCTGGGAAGCGTATT
CCTGGCTGAAACGTTTTATAGTTTTTGTTTTATTTAAATCTAGCTTTGACCAGAAACTTT
GACTGGCCATATATTTTTAAATAAAAACTCCAAATGAAATGATTATTTTTCCTACCTTTC
TAAAATCTCATCTAGTTTATTTTAAAATTTATTCATAAATTTTCAAACACTTCTTATGTG
CTGCTTTGGAATTGTGTGTTGAATGGTATTATTTTCAAAATAGGAATTTGAAGGGAAGCA
AACTCCTTCAATATTTTTGGGGTGCACACGACCCTTCTTCTCCCAAAGGCAAGCATCTTG
AACTCTGATATGTGCTAAGATGTGTGGTGTTTGTTGTGGTGCATTGGAATGCGTGATTTC
ATTATGTTGATAAAAACTCTCGCATAAAATCATACTTTGCATGAGTGCATGTGATGGATA
TTTTTGTTGCTGGATATATGTGATGCAAATGGTGAGTGTCTACTACCCCATGCTTCATAT
GACACGTTGGTCTGGACAACCTTGGAGGAAGGTTTGTCGTGGTGAATATGAGACCATGGG
CTGACATCTCGTGNNNNNNNNNTGGTCAGTGAAGGCATGTCGCATGTCGGGGTGTGATGG
TGGTAACAAACACTGAGGTATATCATTCAGCAAAGTCGTGTGGTACTAACCCTTGNNNGA
AAACTTAAACCTCCTAAGTCGACTATAAATCGAATCTTGTTAATGTGTCACCTTACCTTT
CGTGTTGCCATAGGTCTTCCCGAAAGGGAATACAGTTTAGTAGGTCATAAACCTATTATC
AGGTACACACCAAATAAAGGGGCCGAGATGAAGGTATCCATGGCCCTGGACTAAATCCAG
TCATCCGGACAGGGGCATGGGTGTTTTCGGTCTGGGACCAAGAGGGAAGAGTTCTTTCCT
TGTAGCACACGGGTATAAATTTGATCCCATGCTAGTTGAGGTTGGAGCCTTCCCGTCTTA
TGATTTTTCCATGGCGGCGTAGCCCGGGTGAGACCGGTCTTCGCGGGGGTAAAAATGGGT
GTGTGTTGGTTCTGAGAGTTTACTTCTAAAATACCATACACGGGATTAGTCTGAGTGACT
ATTAAAACCTGTGGGCTGTTGGTAAAGAGTACATCCTTTGTAGAGTCAAAACTATTCGTG
TATCCGTGTCTACGGTCAAGGACGACTGGTTGACTAGTCAAGTGTCGGTCTGAGTATCAG
TCTCTGGAGGAATTAAATTGAAACATGATGAAACCCATGAACCGGGATGATAAGTAGTAC
TATTATTATGAATTTTGATGTGGACTAATCATGTGTGGTATATGGATTTGTTAGAGTATC
CTTGTGATGGTTCTACCTCGTGGATACTCGGTGTTGATATTATATAAGCCTTTTATGTGG
TGTCGCTTAGACGGACGATTGTGGCAACTGTTATTTCTTTTATATAAGCCATTTCTATGG
TGTCTCTTAGCCGCCTGACTCTGGCAACTGTTATTACTTTCATATGATCCCTTTATGTGG
TGTCACTCTGACGCCCAACTCTGGCACGCATGCTATTACTTATTCATCGTTATCTTCATA
TAAGCCCTTTTTTGTGGTGTCGCTCTAGGCATCCAACTGTGTCATGTTTAGTAATATTCC
ATTAACAAGTCCCTTTATGCGGTGCGCTAAGACGTCCGACTGTGGCTTGTGTTACTTTTC
CTTTCGAGGTGTCGCCTCAGAAGCTTGATCAACAAGCTTATACTTGAGTGTTACCTTTCC
TTTCTTGTTTATACAACATTGGTGGACATGATTTATATGCATGAATGTACCCGTGAATTA
ATGGCATGATAGAGTTATTAAGTGAATTATACATGCATCTCACCTGCTTTAACTTATGTG
TTTTCTTGATGTTTGCGAGTACATTCAAATTACTCACTGGCTTGTCACTGGCTATTGTCT
TGGCCCGATTACTTTTTGAGAGGAGCACGATGTCGTCAACCCCATAATCTAGGAGTCGAG
GATAGCAACCTTGTGAGATAGGAATTCAACCAGGTCAGTTGTTCCTGTGGGAATGGAGTT
CCATGGGTACTCGAGATTCCTCGAGTCGCTTCCATCGTCATCCTCAGACTTTTGTCCAAA
CCAGTGGACCTTCATGGTCTTGTAACCCAGATTTTGTATTTTTCTTGGGATTTATGTATC
AAGTGAGTGTCCACCAACTAACAGTAGTCCTGGGTTGGTTAACACAAAGGCCTGTTTTTT
ACAAATTATTTTTCCAAAAAACCGGTCGTTACACACACGGAAGCGGGGATTTGCAGTGGT
GCCAGAGCTCATAGAGAAAATAAGAGATAAATTATTTTGGGAGGTACACCAATCCTGTCA
ATGTTATGACCAAGAGTTATCGATACCCTCCATGCTCAACAAATTAGCGGTGGCTCCCAC
GCAGTAAAAGTAAAGATTTACTCCCCCTCCATCAACAAACACACTCCTCGGCTAGCCGAG
TTCATGGATGTCCTCCATACCAACAACAATCCAGAGGAGTTTTGTTTAATTATCTGTGAT
TTATGATTCGGGATTGGAGTCCCTATTTACCATCCCCTCTCATGCAAGGACGAGTGAATA
ATCACTCACCATGAGAATAACCCGCTTAGTATGGAAGATGTTGACTGTGATTTATGATTC
GGGATTGGAGTCCCTATTTACCATCCCCTCTCATGCAAGGACGAGTGAATAATCACTCAC
CATGAGAATAACCCGCTTAGTATGGAAGATGTTGACTTCCCTTTGTCGCTCCATGAGCGG
TCCACGCACACAAAACAGAAGTTCATTTGAAATATTAGAGGTGGCACATGAAAATATACT
TGGGATGGTTGGGTAATACCGCATATAGATAGGTATAGTGGACTCATCTGGAATANNNNN
NNNNNNNNNNNNNNNNNNNNCAAGCAGTATTCCCGCTTAGTATAGGTGAAGGGTAGCAAA
TAGGTTGGGAAGCGACCA