Map Locations of contig_147685 (10675 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_147685

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_8933 1 205 bp MLOC_8933.1 Available Available None
MLOC_8930 6 2067 bp AK368693 Available Available None
MLOC_8932 1 1249 bp MLOC_8932.1 Available Available LOC_Os03g36439.1, FRAME:-1, EVALUE:9e-101, 13103.m03982 protein F-box domain containing protein, expressed
MLOC_8931 2 2150 bp None Available Available None





CDS Structure of MLOC_8933






CDS Structure of MLOC_8930






CDS Structure of MLOC_8932






CDS Structure of MLOC_8931






Contig Sequence (10675 bp)

>contig_147685 10675 assembly3_WGSMorex_rbca.fasta
CGGAGGGCGGGTTGATTACCTGAAATATCAGGGGGGTTTCGGAAAAATGCAAAAAAATGA
TTCGTTTTCTGACTTAAATCCGGACCGCGGGTTGATTGCCTGAAACATCAAGGGTTTTCT
AAAAAATACAAAAACGATTCGTTTTTTGACTCAAAAATGGACTGCGGGTTGAATACTGGA
AAAATAAGGGGTGTTTTTTGCAAAATGACCGTGACTAGGGAGAGATTAGGGAGAGATGTT
TCATTTTTACAGAAACACCTTCCTATCCAATCCATAGTTCCATACCGTGTTCATCCCCTT
CCTCTTATCCACTCCCACGCGACCACCGACTACTCTCTCCGGCCTCCGTCGGGCCCTAAC
CCTATCGTACGTACGGCATGACGACAGTCTTGTTGTAGCGGAGATGGCTACGGTGCCCCC
TTCTCCTCTTCCCCTCGTTGCCGCCTGTTTGGGTCCACCGGGCAAATCCCCGAGCGGATC
CGGTAGCGACAGGGCCTCTGGCGCGTTGGAGCAGCTCGGCTGCGAGCGGGGGCTCGTGCG
GCGGCGGCGGCGCGGCGCTCCTCCGCACACTTTGTTCGTGCTCTTGGGAAGGTGGTGGTT
CTCGTGGCGCATCCCGTGATCCGGCCGTCTGTGTCCGCGCGTGGAGGGTGTGCCAGTACC
GGCCCGTGGTGGCCAAGGCCAGGGCGACAGCGAGGAAGGCCGGAATTCGGGCTGCGAGGA
AGAGGACGGTCGCTTGGAAGAGCGTCCAACGGCGACTCGTGCGTGCCACCCTGAGCTGCG
ACGGCCTACACAGATGGATCCCCTGCGGAGGAGGAGGAGCTGCTTAGCAATAGTAAGATA
TGCTTGTAATTAAATCTGTTCAATTCTCATGCTAATTAGGGAATGGGATTAGCACCCTAN
NATTTTGTTTTCCTACTCGATTAGACGATGCTCCTTGACCCGAATGAGAGGGGTGCTCAG
CTCAATTTGGTTGGTCTTTTGTGATGTTATCCAATTGCGTGTAGAAATCCCATCTTTATG
CTATGAAAAACTTACTACTCACACTCTAAAGACAGAGTATACATTAGTGTTCTAAGGTTA
TATTGCACTTGAGCATTTGTGCTCTAAGTTGATTTACCAGATGACGGCATCAGTTTCAGC
TGATTTTGTAGCTTCATTCATGCCTTCCATTGGGCACTGATCTGTCTGCAGTCTCCACTG
CATTTTACTAGCAGCAGTTTTGGCCTTGTGAGGTCTGAGCTATCAAATATTCGAATGCCT
TAACTTTTCTGGCTAATCTAATAGCCTAGGAGTATCACCCTGTTTACACATTTAGAAGAT
TTTTGCAATTAGACGATTCCTGAGAGAGCAAAGAGTGAGTTGAGAGAGATGGAGAGAGAG
AGAGATCATGGGAGGAAAGGAGAAAGGACGAGGAAGGCTTGTCGGTGGTTGGTTCTTCGG
CGGCACTGGATCGGGTCACACACGCAGAGGTCCTGCTCGAGGACGCGAAGATCCAGGGAG
GCACTCTCCCGTTCAGTTACCCTTACCGGTTCCTAGGTGCAGCCCCGGCCACCATGGCAT
GAACAGTGCGGATGCGTGCTTCTCGAAGGAGGGCCATGCCGCCGCAGGTGAAAGTGAATC
CCCTTCCGGGCCAGCGGACGTAACATGGTAAGAACGCTGACACAGATATTCAGTTTTTGT
TTGGTTAGGTAGGGTGTGTTCGTTGGATGGACAGCCATTCTTATTTAGTCTCTCTGTTTT
CTCTTATGCCTTGGTCATTCAGGTTGGTTTTCATGGGACTAACTCGCATTCATGGCCGAA
AGTATAAGTCTTTGTGTTGAGAATAGTTGACGTGGGTCATAAATTAAACAATTACTCGTG
TAATAGGCTATGCTTACCGCGTGTGATAATTTTTCTTCTTCCGGTGCAACGCAAGGACAT
TTTTGCTATAATAATAATAATAATAATAAAGCAGGTATCGCTTCTGGCCCTCACCGTTGC
GGCATATTTACAAAAAGGGTCCCTGTGTTATTTGGTATTGAACCCGCAGTCACGTCCCTA
AATGAAAAACGGTTCGCGTGGAGAAAAAAAGGTCACCCGCATCCTCCCGCACCCGCACGC
GCCTCGCTTGGCACCAGCGGCAAGCCATCCCACCGCACGGCTCGCCTCGCCTCCCATCGG
AGCGGTCGGTGGAAGAGCGATCGGCCCGCCATGTAGCACCACCATCCTCGCCGCTCTCTT
CCTTCCCCATCCCGATCTAGGCACCTACACTCTCCTCCCCTCTCTGAGCACAGCATGCTC
CGTCGGCGGAACAGCGGCCCCTTCTGGCCGGATTGAGGAGTGGAGACCAATGCTCCCATC
ATTTAGTTGGATTCCTTCCTCCGGTAGGATCTTCTCCCCAAGCCTCCAACCATGAGGCAA
GCAACGGCATGAAATTTTATTTACTGGGCAATTAACAAATTAAATGCAAGATTGCATTGT
TACAGGGACAGAAAGTGGAACACCACCTTCAATTTCTCATGTGATCCTACCTTCTATACT
TGATTCCCTATTTGATCTCTGTTTGCATCGTTATTATCGGTGAGATGAGTTTTCTCCTGT
ACTGAACATTTTTTTTCTGCAATCTTCTTATTTGTTGTGCTTGAAAAAGTTAGGATTGAT
CTTTTGGTCCATTTTATTTCAATGAGTAAATGTCATGTACAGAAAATCAGTACCCGAGAT
TACAATTGCTTCATATATACTCCATGGCAATGAGATCAATGCTCGAGTAATAAAAAAACT
TGCTAGAGGAAGCAGATTTGGGGCGCTCTGTTCTGCGGCGAGGTGGACAGGGGAAGCGTT
GAATCCAATCCAGGCCACCAAGTACACCAGAAGAATTGAATAGCTCTTTACTGATTACCA
TGGGTTCTGCTTCGGTGGTGTCTCTGTTGATCTTAACTCGAACATTGGCTAATTATATTT
TGTAATGGGAGTTGTCAAGGGATAGGGACTGATTGCTTTTTTTTCTGTCTGATCAGCGAA
TAGGCACAACCTTTCATGATTTTTGAAGTTTGGACAGTTTTATGTGCCCTTTGTTGCCTA
ATCCCTATATTATTGGACGATCAACATGGTGGCCATCAGGGTTCCCATCACCGTGTGACA
AGCTGGAGCTACTCAAGAGCGCCCCCAAGCTGGTAAGCTTCTCATATCTTCCATCTTTTC
TGTAGCCGTCGCAAATCCGCATGCAGTTTGCAGCATCAGAAGAACACAAACCCCGTCTAG
CATCATACAATAATCATCATTGTTATAGATACAATAAAGTATAGATATTTTCTTAGGTAG
TATCTGGGAATTATTTGCTTCTGATTGTGGCCAAGCATAAACTAACATAGTGACATCTTT
CAGCAATTTTCCAAATTAGTTCAGTTATTGTGTTGCAACATTGTACCTTTTTATAGGAAC
CGAGTCACACACAAAAGGTCCGGATTTTCTCCCACATAGTTCATGCTTTGTACAAATAAT
CACGTGTAAATCTTATTGTATTTGCTATAGGAAAAGTTGTTGCTTTCAAACCTTCCATGT
CAAGAAACTAGAAATATTTTTTATGTGTTTTACCATGGCTTCCATATCAGACTGTTGCTC
TCATGTTTCTTCAGTTATTGTCTTGCAACATTTTACCTTTCTATAGGAACCGAGTCACAC
ACAAAAGGTCCGGATTTTCTGGCACATAGTTCATGCTTTGAACAAATAATCACGTGTACA
TCTTATTTTATTTGCTATAGGAAAAGTTGTTGCTTTCGAACCTTCCATGTCAAGAAACTA
GAAATAATTTCTATGTGTTTTACCATGGCTCCCATATCAGACTGTTGTTCTCATGTTTGT
TCCCCAGGTTGAGAATAGCAAGATACTTATTCTCCATGGTATAAAGATTAGTGTGGTTTT
GAACTCCATGCTGGTAGATCTTTTTCACCTAATGTGTGATCACTATGTGGAGTACGCCAA
CAATAATGACGGCATCAGTCCATTTGAGAGTAGGGGTGGGACTTCCCTCAAGTTATTCCC
CCTTGAATCTTCCGACAACCTTTTATTTACATCTCCTATTGTGTAGTTGGTGACAATAAG
GAATTGTTATCCATTTGAGAAAATAAAAATTAAATCGATGATGCTCTCAGAAGTAAAATG
GCTTTCTGAGAATCAATAGAAAACCTATCTGAAACCTTCTCCATGTATGTCATAATGATC
TTTTCAATTTTTTAATCTTTGTATATTAAACTAGAGAATATTATTCTGCATTATTTTCAA
CCATTACTTTTTATCTGTTTGCATTATGACCATATGGTTCTCACTCAAAAAGAGGCCCAT
CAATCTATTTTGGGACTTTTTAACACCACATATGTGATCTTATTGAACTATATTGAGAAC
TACAATCCCCAAAGGATCATATATGCGTGATGTGCATAAGCATATGGCGTACCTTTAACA
CCGTTCATTTTTGAACCTCTAGAATAATAAAAGTTGTTTGATTAGTAAATTATTTTTTAG
TTTTCTAAAGAATTTTTTTTGAGCGAAAGGTTTTTAAACACATGTTTATAAATCAGATGT
ACACTTGGTCGGCACTAAAGCTCTCCAAAGATCTTCATATCTTGCAAACAAAATTCCTAA
ATCGAGATGAGATAACAAACACCAGTTCAGCTATGCATTCATTGCATGAGTAGTGTGTGC
ATTCAGCCAACTGAACGATGTGGCCGCTCAGGTAAACATTGTGGTTAATATTGTACGACA
GACTTCCATCTCCTTAAGGTCCATGTTGCCCATTAAAGCCGGACACAATATAGCACATAT
CTGCGTTCAGTGCTTCCATCCAGTTAGAAAACTTTGCATAATTTTTGTTGTTACTTATGA
TTGAACTATTTGTGAACGTTGAAACAAGAAAAAATTGTGATGCACAAAAAAAAGAGCACA
GACAAAGATTTGGCTAATAAAGATATGGGAAACCCTTTCCTTCCGCCGGCGGATCACACG
CAAAGCATCCATCGTCTTATACATCTGATTTATTGCTACGTCTATCCTCATACAACTTTA
TTTTTTTCCATGCTTGGCTCTCTGCTCCTTTTTCTGCAACATGATCTCCGTTGTAAAAAA
ATTATAACACGTTCTGTGTTGCAAAAATTTCTACAGCAAGATCTATGTTATGAAGATTTT
CGTAACATGACCTTTGTTGCAAAAATAGAGGACCACATGCGACCGCTAGATTGCGAGATC
TGACGGTGATCCGGCGGCCGTTGTTTCGGGAATTATTTCTGTAACGTGACCGTTATTTCT
GCAGCGCGACTGTTGTTTCAGGAATTGTTTCTACAATGTGGCTGTTGTTTCTGCAAAACG
GTCGTCGTTTCTGCAACGCGCCCGTTACAAGGCGACGTTGGACGCAGGTCTGTCGGGGTC
GGAACAAAGCAGTTGTTTCTGCAATGCGGATGTTGTTTTAGGAATTAATGAATGGGAAGG
AGACAAGCGAAGCGTGTCAGAAGATCAATCAGACGATTGTCCACACGTAGATCCAACGAT
CATCAAAATGACGGATGTATAGCCTACGTCAACCGGTGGACGCGTAGCAGTCCCCTAGAG
ATATACAATATCACAGGGTAAAGTAGGAGATTGATAAATGAACGTTTTCCTCCAGTTGCG
GGCATGTTTGCTATAGATACATACCTAATAGGTGTTATGATATTGGTATAGAGTCGACCG
TAACATCTGTAATGTTGAAATAGATTTTGAGTTTGGTACATGCAAAATTGTTTACAGCCA
ATAAACATCGTAAGTGATAATTGATAAATGAATGTGTGTAGTAGATTCAACCATCTCTGG
CAAATACGCAAGTACGCATGAGTATCATTTGTTTTTGAAATTTCTAAACATTTTCCTCAA
CGATGGCCCTTTTTTATCTCGCATGTGATATATTAATATGTATTCAGATATTTACAGATG
CATTGCTGCATTTTGTATAATTCTAATTCAAAAAACACAAAATAAATCCAGAATTAAGTT
AATTTTTGTGTTTAAAATCACTAACATTGACCTTGCTTTCGTGTTATTAAACATGCTATG
ATCTGAACATCTTGCATGTGCCTCGGATGATCTGAACATCATGCATGCGCCTCGGAAAAC
ACTTTTCCATTCACCATGAATGAGTCTTCCATTGAGAAAGGAGTCTCATTCTCAAGCCTC
GCGGGAGGGTGCATGCATTTTTTTCTCCCGTTGCAACGCACGAGTCTTTTGGCTAGTAAC
ACCAATATACAGTACTAGATGCGTCTCAAACTCAACAACAAACCGAACCGTGGGCAAACC
AAATGGCATATCGACTGTGCACTCGAATGTACCCTCAATTACATTGTACAACCAACTCGA
ACATATTCGAAATTTTCAAACAGTACATTATGAAAAGTTAATAACAGAAACTATACATGC
ATGCTCTGGGGTCAGGCAGTTTGCGATGGCCCAGCCAGCCAGTCCATGACTTTGTGATCC
ATAGTGCACTTACAGGGCTCCTGAGGATTAATGGAGTGTTCTCCACAATTTGAGCAATCC
ATGAACTCTCCGAGCTCAAACTTTGAGTTCCAGACAAAGGCCTTCAGCCGCGAAGCTTTA
TGAAGCACACTACTTGAGATGGCCGAAGTCTCATATCCTGATATATCCAGATACTCAAGC
TTGTCAAGGCAATCCAGGAATTTTACTATTGCAGCACAGGACATATCAGCATTTGGTATC
TCAAGCTTCCTCAGCTGCGGAAGAGACTCGCAAATTATGGAGGCCATATCTTCATCCACG
TAGAGAGCAAACACTTTCAGTTCCCGAAAACCTGGGCAACACTGGTGCACATGGAGGAGG
ACATCATAATGAACAAGACTCTCATCCACCGCCATGCCTTTAAGTGACTGAAGTTTGCTG
ATCGCCCCACAGAAGTCATCAGAAGTCATACATGTGGTAGGAAAGCTGAAATACTGCAGG
TTTGGACTCCTGTATAAAACACCCGGAAAAGCATTTAGCTGCAATCAAATTTTGTAACGA
CAATAAGGGAATGTCATTAATGAATCCTGACCAGATTGTCAAAAGATGACATCAAAAGCA
GTTTATAAACATCATGAACAAAATAATCAACTCACCAATTAAACTACTGACTAATATCTA
GATGAACTGCATAACCATGATATGTCTCATTGTTCCAAACAGTAGATCACATCTCACATG
TGTACAGTAGCTGTCACTTCAATGTACAGGTCATGCAACCAACTATTAATTCAAGAATAT
TGTTTAAGACAAAACAGTGCAGATTACAGATTTACGACAAACCATTGATCTGTCCATGGC
ATCCACTCTAGAGGTAAATATAACTTGTTTAACTTGTATTCAACACATATATTTCTTTGC
GCCAATTACAAGAATAATTAAGTTGAAATTTGCAATTAACTTTTAATAATCCCATGGCAT
GAAATAAGCCAATAGGAACCAAACAAATTGTAAGAAGAAAAATAAAGTTAACATATTAAA
AGCTGACAACACTAGCTTATTTTGGAATTTGCACAGCTGAGTCACCTTAACATGTTATAT
GATATAATAACTTACGGAGTCAACAATTCTTCTGTTCTCATGGAGAAATTAAATTCATGA
AACACACAGCTACTTTTCACACCCATGCTTCTCTTTCTTAATTTCAGTTCTTTTCACCCG
TAAACTGTACCAAACAAACATTACATCTGCACAATAGGAAGATTGCCTAGGATGGTTGGT
TTACCATCACCATGATATGAAAATGTATAGATGACTTCCAATGACAAAGAAGCAAGCTGT
GAGGATGGTTATAAGGAAAGGCAAGAGATACAGAGGCAACTGGTAGGCAACGAGTAGGAG
GTGGTGAGAAGGCGAACCCTAAACAGCAAGACTGAGCTCGTTAGGTGCAGCAAGGCTGTA
TCATGCAGCTCAGTACTTCAAGAATTTATCAAGGCGTGTTAGGACATTAAGAGAGTTAGA
AAAAGCAGGATTAAACACATAGATTGGATGAAACATGGAAGCAAGGGGTAGGAGACAATT
GCAGTTCGGCAGCAGGGCATCTAGTAAAATGCAAGCAGAATGGCGTCCCACAGGGATGCC
AACCAGGTTGGGCCAGCAAGGATGTGAATATTGGGGCGATAGGGGCTGGGCAGGTTGTGC
ACTGCGAATACATCTTTTTTATGCAGAAACAATTTGAAGCATGTGGTAACAATGTGACCA
CCAACAAGGATTTTGAAAAAAAATCTAGTTTAAAGCAGAGGGTCACATGAGAATACTAGT
ACCACAAAGATACAACAACCATGCGCTATAAGGCTCTCATATTACTGAGTAAGAACAGAT
ATTTTGAATAATTAACAAGAAATACAGCAGCTTAAAACATCTACTAATAACCAATCTAAA
AAAATGGCATGCTTCAGCTTACAGCCACCACGTGCCACATTGACTGACATATCTCATCTG
TGAAACCATCACCCCTCATTTTTCATGTAACTGATTTATTAACTTCTGAGAGTTGAAGGA
CCGCAATTTTAAAATACAAGTTCAAGAACTTAATTGGCAATTGAAAGCTATCACTGCCAG
AAGAGCTTCATTTTTATTATGATTCACGAAAACATTGTCAACAAAAAAACAAGTTTATTT
TGAGTCCATTGGGAACGATTAGTTTCATTGTTCAAATCATGTAAACTACAAATCCCTCTT
CAATGGCACTTCCATCCCCTATCCCTCATCAATTTCACTAATATCACTGCCAGCGGCATT
TCATTTCCATCATGATTCACCAAAATATTGTTGGTAAATAAACAGAAGTTTATTATGAGC
CCATTGGTAACAATGAGCTTCATTATTCGAATCATGTAAACTGCAAATTCCGTCTTCAAT
TTCACTACTATCCCCGCTGGTAACTTCTAAGCATGTGAGGTTGAAAAATAATACCAACAT
AATAATTACATAAACAAAGCAGTTGAAACTTGAAACAAAAATTATCCATAAGATTGTGTT
CCAGAGAGTTCGGGATTCTACAGACTAAGTTATAAAGTATCAAATTCGCTTAGATACTAG
GAAAAAAATTTGTTAAAAAAAGATTAGGTAAATTTGCACAAAAAATATGTGAAAGCCTTG
AAAAATGTCGCATATATTAATAGCAATTTCACTCCCTTCAAGTTTAATGATATGACACTT
CACCATTCGAGCTGACAAAACAATCTAAAAATGAAATATCAGTTGCTACTTCATACGAAA
AGGTTTCACACAAGAAACTCATTATGTAGACATGAATTTGATGGTTATGGTTTTTTTTAC
TATGAATTTGATGGTTATGTTGCCTAATAAAATGAACATTCAGAAACTTGGAAGTCCCAT
ATGGATTTACACATTAACAATCATAATCCAAACCAGATCATGTCAAATCCTATGGAGTAG
TGCTGGCACATAAACAATCCTAATCAGCTACGTCAATAAAATCCTCAATTGCACAACAGA
AAAATGCTATTAGTACAAATTTACAGACAAAGTTCCACTTTATCAGTATAGCTATATTTA
GTTCTACATAGATCAAACGAGCATATGAGTTATCATAGAAAATAACATACTTATAATAAG
TTAAATCAAATACAAGAAGGTATGGCAGTAGGATAACCTAACCAATTTTGTGCAGAAATA
ACTGAATGAACAGCATAGCGACCAGGCGACCAAGATTACAGGAACAACCGAACAAGGACA
AATAAGCTTCACCTCTCGGCGAGGAGCATGAGGTGCTCTTCATCGGCAAACTCCGGGAGG
AGCACAGCCTCCATCCGACCATCTGCCCGCGTTGCGGCGACCTCAAGGTCGCCGGTGAGA
GCGGCATGTACAGAGACGATCCCTCTGGTGGCAGCGGTCCCCGCCGCGCGCCGGGCGGAT
GTCCGGGCTGTCCAGTCCCGGAGATCAACGCGGCGCCATGCGAGCGGGTCGCGAGCGGCG
GCCCACCACGCGGAGCAGGTACGGGGTGCGCCGCCGGAAAGTAAATCGGGGGCGCCCACG
CGAGACATAATCGCCACAAGGAGGTCGTGCTGCAGCTCCCCCCACGACCGGAGCGCCGGC
GGCGCCATGGACGGTCGGAGAGCGGTAGGTTTGCTTTTTTCTTTCGCAAATGGAGAGGTG
GGTTGTAGGTTGTCGCTGGTCGTGCCTGAGTATTTTACAAATGTAACCCTATGCCTGTTT
GCTTGCTAAAAACTCCCACGCCAACATTGATTGCCAAGAATGCGTAGAGCTATCGGCCCT
TTGCTCTGGAATAATAACCATTTTAAGGGACTGGGACAAAAAGTCATCCCGTGCAGGTCC
GTTGGCCTGTTACGGAAAAAAGAAATGTTGGTAGCTGTATATCTCGTCTCCGCGAGTGAT
CTGCCCCCGGCGCGCCGGCCCAAACTTTCGGCCGGCCGCGCGTGAGTCGTAGGATTCACC
AACCCCGCGTCGTCCGTATCGTTAGATCCGCATGCAACATTTTTCTTCCTATACAACAAA
AATTCGATGCTATGCAGAAATTTTTTCAATGGTTCCAACAAAAAACAAAATTTGTAGTAA
AAAAATATCTACGTGATCGTAGCAAAAAACGAAGCTGATGGTATGTGGTAGCAAAAGTCA
AACGCCGGTTGTAACAAATATTTATGTGGCATGTATGCAACTTTTTTAATGAATG