morexGenes - Barley RNA-seq Database

Contig contig_145935

Source Contig contig_145935

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_145935 (2832 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_145935

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_8747	1	455 bp	MLOC_8747.1	Available	Available	LOC_Os01g52490.1, FRAME:+2, EVALUE:6e-40, 13101.m05492 protein 40S ribosomal protein S24, putative, expressed

CDS Structure of MLOC_8747

Contig Sequence (2832 bp)

>contig_145935 2832 assembly3_WGSMorex_rbca.fasta
ACCAGGTGCGCCATTAGTAACCCTGCTTATCAATGGCGCATTCTTAGGATTTGCGCCATT
GGTAATCTAAGAGTAGCTAGATATTAAACTCCCTAGGGTTTCACAAGATATATTCCTGCT
AGGGCGCCTACCCCTCCCCTCTCTTCTACCTCCGCTTTCCTCCCCCTCGCACCGCCACCG
CCACCTCCTGCGCAGGCAGCCCACCGCGGAGCGTGGTCGAATCAGCCATGGCAGACGCCA
AGGCCACGACGGCGGTGACCCTCCGCACCCGCATATTCATGACCAACCGCCTTCTCGCCC
GCAAGCAGTTTGTGCTTGAGGTCATCCACCCTGGCCGCGCCAACGTCTCCAAGGTCGGAG
ATCTCATCCCCTTCCCCTCTTTCCTTAGCTCGGTTACATTTCATCGGTGATTCTGAAGCG
TTCGTGTGCTTGTGCACACGCGGAGCTCAAGGAGAGGTTGTCCAAGGTGTACGAGGTCAA
GGACCCCAACTGCATCTTCGTCTTCAAGTTCCGCACCCACTTCGGAGGCGGCAAGTCCTC
CGGATTCGGTCTCATCTACAACAACCTCAAAGCTGGCAAGAAGTTCGAGCCCAAGTACCG
CCTCATCAGGGTATGGATCTTTTTGCCCTTGTCTCTTCCTCACATGGAGCTTCGTTGCAT
TGTCTCGTCTAGACGTGCGCTAGTATTTGGTTCCGCTGTGCTCACCCATGGGTTGAGATG
CAGTAATTTGTATTGATCTAGCCATGGTTTCTTAGTCCAGATGTCATAATTTGTATTGAT
CTAACCATGGCTTCTTAGTCTAGATGTAGTAATTTGTATTGATCTAACCATGGCTTCTTA
GTCTAAGTGAATTTTCTTGCTGCTCACTTAGGCTGTTGCGTTTGATTTGAGTTAGATAAC
TAGGTCTGCTCTCATTTTATGTTTCGGAAGTAAGATGATTTGCATAAGTTAATTGTTTGC
TAGGTTAAGTCGGTCAGCAGTAGAAAATTGGATTTTGGAACAACTAATTCTTGTGGGAAT
GCTTATTCAACCTCTTTTGGTTGGTTGTTTCAATCCTCGTTTGCAGGAATAATGCTTTAG
TCAAGTTTAGTTTACGCCGCCTCTCCTTCAAAAAAAGTGTTTGGCATAGGCCCCGAACCC
ACCTCATACCTTGAATCAAATAGGCTACTGGTTTAGAATGCCACTATGAATGTAATACCA
TCGGTTGCAAAGTTGTTTGTAGACAGTTTCTAAACCAAAAGATTTAGAGGGTAGATGCAT
TAACATGCCTATCAGTTATGTTGGTGAATTGGGAAATGAACTGAGACAATACATGGCTTG
TTTAACCAAAGGATTTTCTCTGGACATTCCTCTTTGTGGTTACCATGATGGTGTTGCAGA
TGAGCTTACTCTGAGCCTGAACAAGTTAGTTGATTGCCTTGTTAGCATTTAGTCTTTTCT
AAATTATTAGTGTTCATCTCCAAAAGTATTGATACATAACACTTGTGTTAAAGATAGTTC
AAGTAACCTATGTTAATACATGTACATGGTATAACTAATTTCAGTACACTTTTTACTTTG
TGCAACCCAATCATATTGTTGTGCTGGTTATCCAGCTTACTCTGTTACTTCACCCACTTC
TTTCATAATAGATTTTTGCTTGCCACTGTATAGTGGTTCCCAAGCTTGCCATATTTACAA
TTTCATGATAGAGTGGTTATTTTCATGCATCTTTTGTGATATGTTCAGTACCCAAGCTTG
ACAGTGAATGTGCATATTTCCATAGTAGGTGCAACATGGACGTATTTACAATTTCAAGAT
ATTGTTTATTCTCATGCAAATTCTATGGTTGCATGTCCTCTTATTATGTTTCCGGAGTGG
CTAATATCTTTACATTCTTGTCAGAAAGGTCTTGCTACCAAGGTAGATCAAGGAACGGTC
ACGCAAGCAGATCAAGGAAAGGAAGAACAGAACAAAGAAGATCCGTGGTGTGAAGAAGGT
CAGTTTTAACACAACAATTTTCACATTGATGTCAAGTTGCACTTGAATATGCTCTGTTTG
TTGATCGTGTGATTCATTCTATTTTCTCTGCGTTGTTTTGCTGACCAAGGCCGGAGATGC
CAAGAAGAAATAAGCACATTTCTGTCTTCCATCCATTCACCATCAGCCTTTGCTTGGTTT
AGGACGGTATCCCTGGGGCAATGTTGTTGAGTACTTAATTATGACTAGAAAAGACTTTGC
CATTTACGTCATCTCCTGGTATGTTAAGAGGCATTTTGTAGTATCTTATGCTAAGATTTT
GAGGAAGTTGTCGGACTATCATATTATACCTATTGTCGTTGCTCTTGGTTTTGTCCATTG
AGTAGTCAAATTGCATTGTGTGGTTTATTCTCCTCAAATGTTTCCATGTTGGTGTGTGTG
CATCTCAAAAGGAAATTGCCGCTAGGGCTGTGAATAACGGAATAATGTAATCAATGCAAT
TTATTTTGGACAGTCGTTCAACTTATATGAATCAATGCTATTTATTAGAAGGTCCATGAA
TCGTCCTATTAATGTGTTGCTTTTCTCTTCCGGTCCTTTTGTTGCGTACTTATATATTTC
TTATATATTATATGTGAATTGCTACTAATGTTTTGTTTGTCTAGTGCATAGAGATGTCGT
CGTATGTTGTGTACAAGGGTGAGGTTCCCGTAGTCTACGACGACTGGGAGGAGTGTCGGA
GACAGGTTCACCATTTCAGCGGTAACAGTTACAAAGGATACACCATTAGGGCAGAGGTGG
AAGCTAGATACGCGCGCTATCTAGCGGGAGAGAGGAGGGAGCGGAGGAGGAACCAGATGA
AGATCAGTTTCA