morexGenes - Barley RNA-seq Database

Contig contig_145749

Source Contig contig_145749

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_145749 (2275 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_145749

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_8727	1	1237 bp	MLOC_8727.1	Available	Available	LOC_Os06g06790.1, FRAME:-3, EVALUE:2e-19, 13106.m00704 protein OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed

CDS Structure of MLOC_8727

Contig Sequence (2275 bp)

>contig_145749 2275 assembly3_WGSMorex_rbca.fasta
CCCTCCGGGGCCACTGAGAATTTCTGGAAGGGCTCCCTCTCTTCGGAGAGGGGAAAGCCC
TACAAATATATCCAAATTTTGTCCTGTTATTTTAGGCCTTTGTTCTATTTTAATTTAGTG
GCGTCTTCATTCAAAAAAATTCTGACAAGCAAGTGTACTAGTTTAAAAGTGTCCCGGGCA
ACACCCTGGGTACGTCATTCCACCATGACTAAGACTTTGAAGTAGGAAACCATACCAGCC
AACCACGAACCCGAACTCTAGATCTGTCATCCCACCACGAGTAAGACGTCGAAGTAGGAA
ACCATACCAGCCAACCACGAACCCATCACACGTTCCGTTCCGTCTTTTAGATGCAGACCA
CAATCTGCATCCGTTCCTGGACTACCTCCCAAGCTTCGCGTCGACGCTGGAGCAAACGTC
GTCGCAACAACGGAGCCCGAGGACACAGGTACACCACGAGGATGCCGTCGCTACGCCATC
CTTACTTGAAAAGACTAATTTTCAAATCCATCCCCAACCATAGGAGCGATGGCCTCACCA
GGGAAGGATCCGAATGCTCATTATTCAACGTCGTCATTGCCGCTATCGAAGCCAAGACGA
TGAACAACCTACAACCCTAGAGTACAAAAACTAAAAACGATCCACACGTATGGATCCGAC
GACCCTCCTCACCACCGGCGACCAAGATCGCCGGCCGAGGAGAGCCGCCGAAGGACAGCG
CCGGAAGATTGTCCTCTCCTGGCGGCGGCTAGGATATTCATGCAACATCTAATATCGGAG
TTCCTGACTTTATTTCATTATAATACATGAAGAAGCTAATTCAGAACATGTGGTACATCA
TACATAGCCAACTGACGTGTTAGAACATTTGGTACATGATCAATTCATCATATATATTTT
TAGATGTCTACTGTGTAACCGTGATCAACACCTACTCTATTTCCTTCTCTATAAACGCCA
TGCTCCATGGTCATTGCCATAGCAACGCAGATATGCTGCCATTTTCCTTCAACGCGTCAA
GCGTGCTTGAACGAGCAATCCACTATAGCTCATCCTTGACATTGTCAGCCGCAGCTACTG
TTTCGACGTCAGGAGCTTGGAGCTTCTCCTTAATCTCAACGTCCAAAATCTGCAGCTTCT
CCTTGATGAATCTCGCCATGTCTTTCAGGCTTAATTTCTTTGAAAGTTTGATCTGTATTT
CCAGAAGGAGAGCAACAATATATCAATAACGCGTGGCCAAGGGTAAATTATGGCGTGTTT
GCATTTTGTTTCGGTAGACGTACCGGGTTGGTCTTGTCTTCAGCAGGATAAAGCAAGAGT
GTGGGGTAATTGTTTACCTGTATGAAAACATGGGGAAACCGTAAGCTGAAGTTAATACCT
TCGATAGGTCATTGCAGGTTTATTAGATCAATTCATTCGTTCGGCATAATGGCAAAAAAA
CTATGCTTCCAGGTTCCAGCAGTCAAAAGCAACGGAACTAAAAAACTTCAGATCTCTTTT
CACAAATTTAACCTTTAATGAACATCCTAGTTATCACTCATTCATTTATGTCACTTATTA
AGCTATTCTTCCTTATAGCAATTAGCATACATGTACAGTCATAAGTAGCAGCAATTCCAC
CAGAACCTCATCTTCAACATATAGGAAGTCGTATTTCTGCTTATTCTTTGTTTATAGAGC
TGTCTTTAAAAGCCCATGCATGGCAACATTTGCAGTGAGCACCTCTTTTTTTTGGTGGGG
AACAAACAAACTCCACATCAACATTTCCATTTGCAGTAAACAACAAACAAACTCACCCTC
ATGTATGTCAATATTCGTGTGTTCTTCAAAGCACAAATTGTTATGGGCTTAGTTATAAAG
TTAATGGATGTAACTATGCACATTCCAAAGCTTGTAAATTCATAAAAAGAGTTATTACTT
TTTAGAGTAATCTAAAGTCTCAGAAATTGTCCAAAAAACACTTAGTGTGGTAAATCAATG
CACATGATTCCAACAATAGTTAATGAAATCTGCAATCCAACAGATAATGTGTATGTGGTT
GAAAATAATCTCCTTCATATGATTATTTTTTCTGAAGGCGCTTTCATAGTAGTAACCCTT
CACAAATATAAGATGTTCTGTATATTTCAATATGGACTACATACAGATTGAAATGAGTGA
ACAAACACATTAAAACGTGTCTATATACATCCGATTTAGAAAAAAGTTCAAAAATCTTAT
ACTCCCTCCGTTCCTAAANNNNNNNNNNTTTAGAGGTTCCACTAGTGGACTACAT