morexGenes - Barley RNA-seq Database

Contig contig_145068

Source Contig contig_145068

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_145068 (1897 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_145068

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_8647	2	783 bp	MLOC_8647.2	Available	Available	LOC_Os03g12450.1, FRAME:-2, EVALUE:7e-18, 13103.m01426 protein nucleoporin, putative, expressed

CDS Structure of MLOC_8647

Contig Sequence (1897 bp)

>contig_145068 1897 assembly3_WGSMorex_rbca.fasta
ACATATAGTTAGTTGTAAATAACTTTGAGTTCCTAGCTTACAACGAAATCTAAACATGTA
CTTTTTATAACAGTATTCTGTGCTTGATGGTGTTCCTATGTATTGGTTCAAATTATCATG
TTGTTTACTAGCAATTGCAGTGCTCTTATTATTTTATTTCTACAAATATGAGATTCAGTT
TTTTTTTCCGACAAATATGGGCTTCAGATTGTTGTCTCATTGAGTGTGAGGGATGTATAA
GCAAAAATAAACAGCGCAAAAAATTACAAATAAAATGTAATTTATCACAACAAAAATGTT
TTCCTTTTAAATAAAATCTTGATTTTTTATTTCAGAAAACACCTTCTAAAAAAACCGTGC
TTGCTGATAAAAAATACGCGTGGCATCGCGCCGGAAGTCCACGACAGTGTAGTCAGCGTC
GGGGTGTACCCTGCCGATCAAGGGGATCACGGGGAGGCTGTCGTGGACTGGATCTTGTCC
GAGTTGATAGACGGCTATTATTTATGTCCGAGTTGACAGATGGCTATTATTTATAGTTAT
AGCCTGCATGTGGATATGTAGTTGTTGTTCACTTTAGATACACTTTCGGAATATGGCCAT
GCATAGGGTGCATGCGACGAAGCATATGACCAGTACGAGTCCAAATCCTATTTAGATTCC
TACGTAGGTCCAAAACCTACTTGGTAGCAGGCACAGTTGGTGCTACAGATAATTTGCCAG
TCAAGCGTGTCTGTATACGAATCAGATTATATTGTACAACGACTCCAAGTCCTATTTAGA
TTCCTAAAGAAGTCCAAAACCTACTTAGGGACAGCCACGGTTGGTTCTACAAATACTATC
TCCAGGTGATTGTTATCTTACACAATCCCAAGCCTTTGGTTCAATCAACATCTCAATTTC
ACACGTCGCCCTGTAGTACTTGCCTTCGTCAAGCCAGCTTTACAACAGCTTTACACCATG
GTCCGGCCCATGTTCAAATTTGGCAGTTAATAGACCAATATATCCCTCCAGTAGCATATC
TGTGAGTCCTTCCAGCTGAGACCATAGATTAGATTTCATTGGCATGCTTGCAGATCCTGA
TTCTCTCAAAAGCTCCATCACAAATGATGCCAGACTCCTGAAGCAACACAGAATCATGAA
ATAAATAAACTTTGGCATGCATTGTTCAAAACCTTAGGAATCCATCTATTTGCTGGCTAG
CTTTGGTTGTTCTCAAGGAAATAAAGAGACATGATGAACTTGCAAATTATAAAAGCGCAA
GAAGAACATTAAGAAAATAGTGGCGTAGAATTAGACAAAACCTGATATTTTTGCTTCTAT
AATTTGCTTTGCAAGGTCATAAAGGGATCCAAGAAGTTCATCTCTCCGTTCACAGTATTC
TTGGGCTAGCACACCATAGTCCTACCCACGTTCAAATTTGGCAGTTAATAGACCAACAGC
ACAAGACGACAGATGACATTATTGCAAATCCTGATTCTCTCAAAAGCTCCATCACATATG
ATGCCAGACTCCTGAACCAACACAAAATCATGAAATAAGTAAACTTTGGCATGCATTGTT
CAAACCTGAGAAATCCATCTATTTGCTGGCTAGCTTTGGTTGTTCGAATAGCACTGATAC
TGCTTAATCGTTGTTGCTGGTGCCACCTAAGATGCTGTGCCAACAACATAAATAGAACCT
GGAAATATAAGAAATGTTCACTGCTTAAATGATCAAAACAGTGAACTTGCACATATAACA
TGATAATTTTCAATGGACCTTTTAGGGACCAAAACAACCACGAGAACACCATATTTATCA
TGCTCACCATGCTTTTGTTTAGTTAATTCATAGTTGAAATTGTCAATCAAAGTGGCCATT
AGTTACCTTATAAGCTTGGCAGCATCTTCTGGACCAG