Map Locations of contig_143718 (4149 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_143718

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_8511 3 1551 bp AK375453 Available Available None





CDS Structure of MLOC_8511






Contig Sequence (4149 bp)

>contig_143718 4149 assembly3_WGSMorex_rbca.fasta
TCTACCAAAGAGCAATGCTACATCTACGTAAATGTTTACGTATGTTTACGTGATAGTCTG
ACTTGCCAATAACTGATTGGATTAAGAGGAGGATGAGGCTCACCCATCCCTGAAAATCAG
GGGGGCATGTTTAGATTAGTTGGAAGGTTTAATAAACTTACGTAGATTTTCTACGAAATC
TTACGTAGGTGATGAGGTGGGCGTGGTTGATTGGATTCCGCAGCACCCCACCCTGAAAAT
CAGGGGGGATTAGTGGAGGTTAGGGAAGCAAACCTCCTTTACGTAAGTAATTTATAAGTA
AGAATTCGTAGGTGTAGCATTTTTGATCTTAACTACTCTCTCCGTTCCTAAATAATACTC
CTAAGTCTTTTTAAAGATTTCAACTACATACAAAGTGAAATGAATGAATTTAAACTCTAA
AATATGTCTATATACATCCGTATATAGTTTTCTAGTGAAATCTTTTAAAAGACTTATTTT
TCAGGAACGGAGGGAGTCGTAACACATGCATGGTAAAAAAAATGAAGTGATATATATGGT
GAGCGACTGGACGGACCTGTCCTCTGTAGAAGCTGTCGAAGTAGAGGCATGTCCCGAAGT
GCTTGAAGAGGAGCGTGGAGTCGTCGTAGGGCACCCGGGGCACGATGTCGTTGCAGTAGA
CGAACCTGAAGTAGCGGCTGGGGTTCTCCAGGTAGGGCTGCAGGACCCCCCGGAGCCGCT
GGTCGCCCACGCGGGGCTGCCCGAACGTGTACACGCCCTGCAGCCTCCCCAGCACGGCCT
CCTCCCCGTGCAGCGCCAGCACCGTCGGGAACAGCACGGCCAGCGCGCCGCCCAGGCTGT
GCCCGGCCACCGCGAACCGGGCGCCCGGGTTGCCGCCCAGGAACGCCCTGAGCCTCTCGC
GGATGGCGTAGTACGCGAACGGCCTGCCGTCGCCGGCGCCCGTGGGGTCGGCGACGTCCC
TCGGCCAGCCGCCGCGCCGCTGCAGTCCCAGCGCCTTCATGAAGCCGCCGTGGACGCGGC
AGCCGGCGCCGGCGCCCGGGAGCTCGTACCAGGAGAAGTCCACGTCCGTGCACCACTGCT
CCGTGTCGAACGGCTTGGTGCCGCAGAAGGCCACCACCGCCAGCGTCGCGTCCGGCGCCG
GCGCGTCCGCCAGCATGAACGCCTGCGTCGTGTAGTCCCCTTCGTAGTCTGGATCCACGG
ACCGGACCAGAGTGCGACACGCCATTAAATCAAGCCATGCACGCACGCACGCATGCATCG
CACGTCATGCAAGTGACCGAGGATGCCGGAGTTGGTTGTTTGTCTTACCGTTCCAGCAGT
TGTAGAAGCCCAGGAACTCCATGTGCCAGTGGTTCTGCACGACGCTGCTGATGACGGGCT
CGTTCTCGTAGGCCAGCTTCGCGGCCATGATCGACAGGGCGGCGTGGTAGTTGCTGTCCC
CTGGTTTGATCATCTTGTCCAGCTCGATCCTCGTGTCGAGTAGCCCGATGCAGGAGCGGT
AGTTCAGGGATGCTCTGTCTGGCATTTTCACCTTCCCTGAAGCAAGAGTTGGTAGTAGTA
TAAGCTAGCAATTTAGCATATATTCTCCTTCTTTTGGGACTCGGCTGGGTGGTACCACAA
CATACATATACTTGTCATTTTGTCACATGCAATGGCTTGAGTGTGTGACAATGTATATAT
CGATCAGGGTAATAATCTTCAGAACTGGTGCTCAATCAATCAATTAGGGATTGTCCTCTT
CTGGACGCAATCGTCAACAATCGGAATAGTAAGCTGGACTGTTACAGCAGAATAGTATCA
TTCAGTTTCAAAACTATGAAAAACGACCTTTTATCAGTTTTTTAGAAAACGACTTGTAAT
TTCTGCTTTTATGGTAGGCAGTCTCTATTCAAAGACTAGTCCTGAAAATATGTATGTGTC
CTTAATTTGTTCGAAGAATCAGCGGTACGCAAGATATTAGCAGTGTCCATTAGTTGGAAA
TTTGGAATCCGACGAACTCCCTCCGTTTTTATGTACCCGCATACCCAAAGAGTATATGAT
TAAGTACATAGATCTTCAAGGAGAGACTAGTAGGTTGGAGTATTGAGTCACTCATTTTCT
TATTTTGCATCAAGGATGCCACGTTAATTAGGTAGGTTGGTTAAGAAAAAAAGGTACTAG
TAGTTTCGTTGATTGCATCGCTACAACTGCACGAGACCGGGAAATGTCTGTTCATGCCAC
CCTCTCATGAACAAAATCAGCCGACCAGAGTAGTTGAAAGCGAAAGCATCATAAATGCAA
TCAATCATGCGGTCAAGAACAGTTGAATCGATCTATCAGGTGGACGACTGATTTTGAGGA
ACAACGCGAAATCAAACGCTCGGTACAACTACGTACCATGCAGGGCGTTGGCGAGGAGAG
GGAGAACGCCGCCGCCGTTCTCGTTGAGGAGGTTCATCCAGTACTCGGCCGCCCGCCCCA
GCAGCGCCACCGGCCGCTTGGCCCGCAGCAGCAGCATCTGCGCCACCAGCGACACGAACA
CGGCCCACCGCCGCCGCGCCGACCCGATCTCCGTGCCGGCGGGGCACTCCACGGCGCCGT
TCTCGGCGACGTTGGGCGACCACAGGAGGTGGACGAGGTCGCGAACCCCACCCTTGTCCG
GCCGCAGCTCCATGAAGTCGCCGCACAAGCCGACGTCGGCATCACCACCCTCGGAGGCCA
TGCCTAACACGCCGAGCAGCTAGCGCTAGCTATCGATCGACAGTGAGCAGCAAGGAGGAC
GCGCGCACGGGAGACGGCCGGTATATATATAGAGGCAGTGTGGCAGATGGGCACGGTGGT
AACCTGCCGGCCCGGTCAATCAAAATATATCATTGTCGATTCCCAATCCCATTGCCGGCA
GAATATATCATTGTCGCAGGTACAGGGTGGTGATAATGGAGTACAGCCTTTGACTGGACG
CGGACGCGAGGATGGCCATGGATGGATGCGCATGGAAGCAAGGACATGGGAGTGGAAAGC
TTATGCTTGGAAGCCACCTCCATGCCCACGACTAGGTTTCTTGCTTGATTCCTTCACTGG
TTGTTAGTTGTTACGTGAGAGTTGGTACATGGAATGATAGACGGGATGGCAGCGCGGTGG
GGACATGCATAGCCGTCACCATGGGTCCATGACTAGCTAAGCTACGTACCATTATATGCG
CTTCTCCTTGGCGTGCAATTCGCGGGCTCCTGAAGCGGAAGAACATTCCGTCAGATATGG
TGTGCGGGAGAAGGCCGCGGGAATGGGGAAACATTCCTTGGGTCGATATATATATATACA
AAAAAATTCTAGGATAATTTTGTTACGCTCGTGGATATTAAGAACGTGTTTGGTTTGGTT
CATGATAAACCACAACTGGCCATAGAAGAAATGTCACTCTCTCGCAAAAAAAAAAAAAAA
TGTCACTCGCATTCAAAGCGAGATGAACAACATGGTCACCGCAAACGTGGCAGATTGGTA
AAATACTCCTATAATAAAATATATAAATGATGCTTGAGTCAATCGCTTCCTGCCGTAAAA
GTGTTGAAAATATACACCTTAGAGATAATTTATTATCACATTTTCTTATTTATGATAAAT
ATTTACTTTTTGTTTTAGAATTGTATTGACCAGAAACTCGCATGCAAAGTGGGATGAACA
AGATGATCATCGTAAATTGGGCAGATTGGCAAAATACTCCTATAATGAAGGATATTATAA
AGGATAATTGAGTATATGCATGCCTTCTAGGGGAATATATAGCAAAAAATAAACTACCAC
GTTAGAGCAATTTCAACCGACCGACCCAAACGGACGGCCATTTTGTTCACATTTTGTCCT
TTCGGTCAGCCCAGCGGACACCAACGTCCGCCTCGGCGTTTGGGTCGGCGCATGCGCCCA
TCGCTGACCCAATCCATTTTTGCCGGCGTGTGAAAAAAATATAAATCATTTTCAAAAATA
ATAAACAAGCATAATTAAACATTAAAAGCCGGCCACGAAGCCCAATGAGAGTCCACGCGT
CCCCATTACATTAATTAAACATTAAAAAACTAAACCAGGAGGCAGCCCTAGGCGGCGGCG
GCGGCGGCGACGGGGCCGGTGAGGTCGACCAACGTAGACGCAGGGCCGGCCCAGGGGAAC
GTCGTGTTC