morexGenes - Barley RNA-seq Database

Contig contig_143235

Source Contig contig_143235

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_143235 (3874 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_143235

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_8470	1	178 bp	None	Available	Available	None
MLOC_8469	3	838 bp	AK361696	Available	Available	None

CDS Structure of MLOC_8470

CDS Structure of MLOC_8469

Contig Sequence (3874 bp)

>contig_143235 3874 assembly3_WGSMorex_rbca.fasta
CATGGCCACGCCGCGTCCTCCGCCTCTATGCGAAATGCTGGCGGGGAGACACAGTCCCCG
TCGGTGTGCTCGCAGAGCCGGTCGGCGTACGGCAAGCCGCCGCCGCGCAGCCGGCAGGAG
CTGGCGCGCGCGGCGCTGTCCGTGAGCGCGGACCGCGCGCGGTCGGCGTCGGCGTACGTG
GGGCGGATCTGCGGGCCGGGCCTCCGAGGCGGCGCCGGCGGCAAGGCGAAGGGCAGCCCC
GCGCGCGATTGCCTGGAGAACATGGCGGACAGCGTGGGCCACCTGCGCGACGCGGCCAAG
GAGCTGGACGGGGGCCTCGGCCGGGCCGGGTCGCCGGCGTTCCGGTGGCACCTGAGCAAC
GTGCAGACCTGGTGCAGCGCCGCGCTCACCGACGAGAACACCTGCCTCGACGGGCTCTCC
CGCGGCGTGGACGCCGGCACGCGCGCCGCCATCCGGAGCAAGGTCGTGGAGGTCGCCCAG
GTCACCAGCAACGCCCTGGCGCTCGTCAACAAGGTCGGGTCCGGGCACTAGCCCGGCCCA
GGCCCACTCGGTTCGCCTTGCTACGTATACTAGTACTACGCGCGTACGCTCGTATCCTGG
TGCTCTTTAATCTTGGGTCATGTACTCTGCTCATGTTCTTCTGGATGCGCTCTATAATCC
GGAGTAGTACTACTGTATTTCAGTTTCCATGTGTTCTTGATGTGCCTGTAAAATGTAGCT
AAGACAATCAATGAAGAGTGTAATTAATGTTAAGGTGGTCAAATTAAGCCAAAATACTAC
GTATTTTCTTGCTAGCTGTACTGTATAGCTTTTGATTAACTGCGTGCGCTCGCTTTGTAG
TACAAAACTAGAAATGCTAAATAAAAATTCCTGTAGCACTTGCTTGGGAGATCTTGGGAT
AACGACGCATGCATTTGCATCTTGCTGGACTCAGAGTCTTGGTTGCGGTTGGATGAATCA
ATTTCTTGCCGGGATTGGGTAGACAGCTAGGCGCCCACGCACTGCCTGCCTGTGCCTTGC
AGAGTGAATGAAATATCGATGTGCGCTGGCCCTACGTGAACGTGGGGTGCCCATCGGTCC
ATCTCGTATCATAATTGCCCAGAGTACATCGGGTTTAGATCTTAATGGTCTTGTACACTC
TTCAGCGTACACCTCTGTCGTCCGATGGGGGTGCTTAAGATTGATTAGGTTAACGTACTA
CGTGCTCCTGACCTCCTGCTCCCACGCCGCGGAGTGTTTTGGGCAGATCATTTGGTGGCT
GTTCCCATGAATTTATTGTCGGCTTACGCTGTGCCACATGGCCGGAGTCTCTGACCACCA
TGTGGACATGTGATCGTGGGCATACACTGGCAGTGTCAGCCAAACTCTAGTAGCGTGGCC
GCCTTGGCCGGGGGCACTTTCATGACAATCCCTATTTAGGGTCACATGCGTCCGTTAACA
TGCATTTTCGAAAACGGACGCCTCCAGCTGCGCTAGACCGTTAACATGCATTTTCGCAAA
CGGGCGCCTCCAGCTGCGCTAGATGGGCTCCGCCTGTTTCGCTCGCTTCCCGTCCAGCGA
AAAAAGGATGCAAGAGCAAGGAATCGAACAGAGGATCTCCCAATTTGTAGCGTATTGTGG
AAACCGTTCCACCTGAGGCCTCGTTTGGTTAAGGGGGATTGGAAGATTTTGGGAGGGATG
GATTTCAGGTGATTGGGTGAATCCCTTCCTTCCATCCAATCCTCTTAAATCCTCTCACAT
CCTTTCTATTTGGTACACATGGATTCATACACAGGAGTACACTATAATAAAAAATGTAAT
TTTTACAACTTCAAAAGATTACGAAAGAAATGTACTTAGAACAACGGTTTGTTCATAAAG
GAAGAAATGTGAGAAATAGTATTGCCAACAAAGAAGATGCTACACAAATCACCATATAGA
AGTGGATTCCAAAACCACGAATGATCCACGAGAACATATCACACAATAAAATCTATTGAT
TTATCATTCCAGGCATGCAGTGCAGATATAGGAACTCAAAACACAGATACTGGATATTTG
GATAGTTTTCAGGATGACCAAGCAAATATTCACACCACCCATTTTAACATAGGAGTAACA
TGATTGGCAACTAGGCCTTGCACACATTGGACTGTGTGGAGGATGGTCATCCGTTCATTA
CATGCTTGTTCTCGTTGGCCTTGAACCTCTGGTCCTTCGGCTTCTACTCTTCCATTTTCC
TGCCATCAGGAAAGCAAAGGGAGTTCGTCACTTGGATTCAACATTCATCAAATTTACTGC
ATTTTGTCAGTCATCAAAGTTCGATGCAAATGGATCATTCAGAACTGCATTTCGCAACAG
TGTGTTACTGCTAAGTACCACAAAACAACCTATACATTGACTCGGTTAAAAATTATAGAA
CACAATTTGTTTACTATCAGAGGCACAATCACATTCATCAACCTCACTACGAGATGCACA
ATCACATTCATCAACCTCGCTACGAGAGGCACAATCACATTCATCAACCTCCTACTATCA
ATCACATAACTACCACCTGTGTTTATTTAGTACACAACCCCTTAGATAAAGTCACAAGTT
TTGTTTTGCTCTCTCAGCAATTCTCCAACAGCGAGGTTATTGAAATAACAGCAGAGTAAA
CAAGTACAACACTACTCTCTAGATCCTACTCAAGACTAGGAGACCTATTATCTTGTGCAG
GTAGGTTATTGATGCAGGTATACTACAATGAAGATATAATGCGTGTGCCGCTTGTGATGA
TAGAGGGGGAATGTGAGGTTACAACAAAGAATGATGCGAAAAAGAATAAAGGCAAGTAGA
TTTGTGACGACAAGCAAGCTGGTTCAGACAAACAAAACGCAACACCAGAGAACTGTCTTG
CAACCCTTGATATTTTTGCTGGTTGTGGAGGTTTGTCTATATTTCCATCTACAAGCAAGA
ATGAACCAACTGAAGCCATTCCTACTGTGATACTAGCAGTATCAATTTATCATCATCACG
CATGGCACTGACTAGTAGACATAAAAGCAACTGGACCTAATATTGCAGATTAATGACTGA
ACACATAAAGCAGCAGTGGAGTATTTTTTTTCTTTCGGGACACCTGAGATAACCATAGGT
TCACAAGCACCAAAAATAAACTACTGTGAAAGTAACTGAAACTAAACACACAAGAGTATG
AAGAACATAGTGAAATCTTACCTTAGATACCCCGAGGTAAGTCTGCCATTTCGTCCGAAG
GAACACGGTGGCGCTCACTTCATCTTCGACGGCGACATTGAGGAAAATCTCACGATTCTC
AGCATTTTTGAACACCTTGTATGCAGCGGCTCTTTCTCCATGTGAGATGCTTTCCATCTT
GTGCAGAACAGCAATGCACTTGGTGATGGTGAACTGTTGGGCATTTTTCGACCCTGCGAA
CAAAGCAGACTCCTCCTCTGCTTGCTTTCGTCTGATCTCCACATAGTTTGCCATCACTTC
CACCATGGGATCATCCTGCTTCTTCTTGTTGGGCTCTTTCACTGGCTTTTTATTGGAACC
ACCAGGAGCACCTGCTCGAGTAACATCACTTTGAGTACCATCTATTGGATCATCACTTTG
AGTAGCTCCACTTGGACCATCACTTTGAGCCGCATCTCTTGGATCATCATACATGAGTAA
ATCATCTTCACACTCATTCAGATCAAAAGAGAACTCAGTCTCATCTCTTTCAACTTCAGG
ATCATCGTTAGTCACTTGTGTAGCCTCAGTTGACGTAAAATTGAAATTACCTTCTGCTAT
GTGTCCTGCACAAGCACCCAAGTTCTCATTAAAGGTCACATAGCAATAGAAATTCTTTAT
AAAGGTAAGAAAAAGGTAGCAAATGAAAATCCAT