Contig Data
morexGenes
Links



Map Locations of contig_142888 (6305 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_142888

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_8431 2 1592 bp MLOC_8431.2 Available Available None
MLOC_8430 3 2463 bp MLOC_8430.1 Available Available LOC_Os02g54160.2, FRAME:-3, EVALUE:1e-92, 13102.m12340 protein AP2 domain containing protein, expressed





CDS Structure of MLOC_8431






CDS Structure of MLOC_8430






Contig Sequence (6305 bp)

>contig_142888 6305 assembly3_WGSMorex_rbca.fasta
AATACGTTCCATACTCACAAATATTTTCTTGGGTATATCCGTTTTGATATGTGATTTTTG
AGTATGTCACACTTTAACTATCATCTTGGTGTTTATCATTTTTGGGAGAAATATTACATT
GGTATAACATTTCTCTTTAACATACCTTGGGTATATCATTTTTGGGATGTATATTTCTTT
GATATAACATTTCCATTTACCATACATTGGGTATATCAAGCATGTCGTCTCTATTAAATT
GTATATTTTTATTTTGAAAAGAATTAAATGACGATAATGCATGGATGGAAAGTTGTGAAT
GCATATATTGTTTGGAAACAAATGCATGCATGCTAGTATCAAATATGGAAAATATCGCAT
GCAAAACTTAATGGGTTTGAATCCATGATGCATTAATAAAGAACCAGCTAGGTGCCCAGG
CACCGAGGTGCTATGTTGTTCACATTCACAAATGGTAACGACGACATAAAAGTTCACAAA
ACGTAAAGACAATTGTTCAGCATAAATGCCTTCCACACAGACAGTCAACTAGGGAAAGGT
TCGATTATAAAAGAGACACGGGATGCAACTATTTTTTGCATCTAAGCTTGGACATGAGCA
CACTAGCCGAAGGTGACAATAGGGCGCTTCTCGATCTCCCGTAGTTTTATTCCTGAAACA
ACAACATAAACAGAGTAATGAAAAGACTGTAAACCTCAGACTGAACATGAAATTTTGCAA
ATGCTTACTCTTTGTCCCTGTATACAAGGTTTGAATCCCTCAGAAAAATTCACCACCGGT
GGGCATGTCATCGAAGCTCCAAAGGTCCATGTTGACAATGGTATCCTGGGGCACGTCAAA
ATTCAGAAGGCTATCAATCATCTTATCCACGCTGTCATCCAGAAGATATCTCATCCAAGG
TTGTAAATTGACACCATTATTCTCCATAACATGAGGAACCATAGAGTTGTAGGTATTGTT
CTTGACGAGCGCAAATTCTTCTCCTTCAGCAATGGTAGAAGTGGGAGCAATGGATGATAT
ATCTGGAGTTTTGGCGTCATACTCCCAGCCCAAGTCGGAGGAGCCAAAAGAGTTGCTTCC
CTGGTCAGAGTACATATCCATAACAGGAGCTTCAACAGGGGCAGTAGAGTTCATTGCGGG
AACAAGTGGTTGGTTTGATGCGAAGTCAGTTGATCTTGTTGCTTTCTCTGTAAAGTTAAC
CTTGGCCTTCTTTCCATGTATCCTGCGTGCTTCAGCATCATAACCTCTTGCAGCTTCTTC
AGCACTATTGAAAGTATCAGGCCAGACATGGAGATCCTTGGTAGGATGTGTGATTTCAGC
AGCCCACTTACCCAGTGGGCGTTGACGGATACCCTGGAATTGGTTTTTTCTCTTCCTTCT
TTTTGGCATTTCTGAAGGACCATCAAAATCAGCAGTAGGCATGATGCTTAAGTCATCTGC
AATGGAAGATGAATGCCAATGCTAAGAGGGACCAACACAAATAAATTTATCTCACATATA
GTAAATAATATGTCATAAATTTCTATGTAAAATATAATGATTGTAATGAACACTAAACCA
TGATGTGTCAAGTTCGAGCGAATGCATAAGTCACCAGAAAATAAATCAAATAAAATAAAT
ATCACAAGTTAATAAAAACAAATCCAAGGTTCTGATAAACATATATCATGTTATAGAACC
TTGACATTATTCTGCAATTATTAATCTACAAATTGCATTATAAATGATGAAGAATCAAGG
ATATGTTTTTAAGTCGGATTCAATGTTTAGCAGAATAACCATTTAGACTGATAAATTAAC
CAACCTAGAACAATCCTCACGCACACTTACAACCATGTGAGGAAACAATTCAAGAGAGGC
CCAGACCTTTGCGGAAATAGCCAACCAACCAAACACAACGGAAAAATGGAAAAATCCTGA
CCATTCACACAGATCACTCCATGAAAGCACATACAATCCAAAATCTCTAAGCAAACAGGA
GTAACACGACCCAAACATAGCCTTCCAAATAGCAACCCCTGCACAATTTCTCATCCTGCC
CAATCGAACGACCAAACCATTTTCGACCACTCACACAATCTCCTGTCTTCTACTACCTCC
ATCATGGTTGACTAGTCCTTCTTGTATTTTTGGGTCGTTTTTTTACCATGACTAAATAAT
AAAATATAAGTTAATGTAGCGAAAATAACATTAAAATTACACTCAAAAAATAATCCAACA
ATATAACTTTTCATGACATGCATTAAAATTTTACTAGTTAATTATGTGGTCATACTTTGA
CCTAAAATACGATGGAGACTACTAAACCAAGACTGTATTAATACAACAGTTAACCGCTAA
AGGTAGTGATACCCAGATTAAAAACTAGTGCAAGCTACCCGGGCCGATACCTTGGGAGAG
GGATCTATTAAAAACTAGTGCAAGCTACCCAGGGCCAATACCTTGGGAGAGGGATTCGTT
GCCGTCATCCTTCTGAGCCACCCCACCGCGCACCAGCTCCATGTTAGAGTCCCCGAAGCC
AGCCTCGAAGTCCTCCTCGTCGTTGTCCATCCTGAGTCCCTTGCGCCGGCCATGCCCAGT
GAAGCATCGGTCCCCGCGGCTGCCCCACACGGGCTTGTTCTTCTCGGGCAACACCGTCAC
CTCCATCACGTTCCGCGTTACCGCAGAAATCTTGCTGTTCGCAAGGGGCACTTTACCACA
CATGATGGCCGCCGGTACGTACCTCGTTGAAGTCGTCGTCGGGGGGAGAGGCCTCACTGG
AATCGGTAAATGGGCGAAGGTTTTAATTAAGCAGGACGGAAGGTGTGGGTCGGCAAATGG
GTGTGAGGCCACTCCTTATATACACGGTGGCCGTGTGATGATGTGAGAGGGCATGTGATG
GGGCCCACGCACCAGCGAAGGGCCCCACTATTGGAGGAAAGCACGAGGCAGGTTCTGAAA
GCAAGCATTTCTACTCAGGGGAATCTTACGCTCTTGTCCCTCGGGGGAAGTATTATTTCT
TATATTTCCCCTTGAGAATTAATGGATGGATGTATGTTTGACTTTCTTTCTTTGAAGGCA
AGCCAACATTTATCGCTCAAGATTTTTGTACTACTCATATGTAGTACGAGTCTACTACTA
ATGTCATACACTCTTTGATCGGGTTTATTGGATAGGTTCATCCAACCGAACGTTTAAGCA
AAAAATCTTCTCATAAATGATTGTGTGAAATGCTAAGATCATTGCGAATCACTCACACCT
AGTTAGGACAACTATTAGCTTAAGATTATACTAGAAAACTTTAGTATGACTATACTACTA
CGGTTGTACTTCTCGGTTCAATTGTATTGGACGAGTTCATCCAACCAAATGTTTGACCAA
TATCTTCTCATAAATTATTGTATGTGTTTTAAGATCTTTGCAAATAAATCATAGCTAGTT
ACTTCATTTATTAGTTAAAGACTGTACCATGCAATGTAGTATAATTGTAGTACTACCGCT
GTACACTCTGAGTTCGAGTTTATTGGACGGTTTCATCCTACCAAATTTTTAACCAAAAAT
CTTTTCATAAATGATTGTATGTAATGCTAGGATCTTTTCAAATCACTCATAGCTAGTTAT
ATCATTAATTATCTCAAGATTATACTGCACGCATGTAGTATGCCTACTCTTGGTGTAGTC
TCTTCGTCGGGTTTCTTGGACGGGCTCATCCAACCGAGCATTTATGAAAAATTCTCTCAT
AAATGATTATGTGTAATGCTAAGATCTTTGCAAATCACTCATAGCTAATTATAACATTTA
TTAGCTCAAGATTGTACTACACACCTATAGTCTGACTGTAGTACTACTCCCGTATACTCT
ATCTGTACTCGTTTATTGAACAGGTTCATCCAACCAAATATTTAACCAAAAATCTTCCCA
TAAATGATGTGTGTAATGTTAAAATCTTTGAAAATCACGCATAGCTAGTTTATGCCATTT
ATTAGATCAAGATTGCACTACACACCTGTAAGTATGTCTCTATTGTTGTCATAAGACACG
TTCATCCAACCGAAAGTTTGATAAATTTTTTTTCTCATAAATGATTGTACGTAACTCTAG
GATTTTTGTAAAGTCATTCGTAGATATTTACTCCGTTGTTCCCAAATAAAAATACAACTA
CTCCATTGAGTTCCTAGCATGTACTTTATATGCAATCCTTCACATTATTATACAATAATT
ATATGAATTATAAGTTAGCATTCTAACTTTCTCATCACACTCTTGATCTAACCATGTATA
TGGAGATCTAACATCTATTTAAAAAAGAAACATGACATGGACCTTGTATCTTACTTAATA
TTCAGCCAATATCCCCTTATAAATGACTATGCAACTCTTATGATCCTTGTAAATCATACA
TATCTACTTTCCCCAATTGACATACTATCAAGTATGTGCAATTATTACCATTATTATACG
GTTAGTTTATGAATTCAGATGAACATTAAAAAAATTATAATGTTTTCATGATCTAACCAT
GTATATAGAGAAAATGTAAACTAAGATGGCAATGTTATTCGTGACTTTGTGTCTCTTACT
TACACTGAGAAGAAGTAACATGGCAACGCACGATCGTAAACTGCATGAAACAAGGCAAAT
AAGAGCGTAAGCCCCGTGAAAATAGAAAACGTCTCTTGCGTGGAAACTTATATGGTATGG
TGCTTCCTATAACGCCAAGGGAGGAGCTATGTTCACACTACAATATGCTATGTATTGTGC
ATGGACGCCACACCCAAATGTGGCCAGGAGGTTGGTTCCCAGCTTCGCCTCGGGCTATGA
TTTAAGAATATATTGAAAGCCTTAACAACATAAGAAAATATTTAACCTCGTCAAAAAATT
AATGATAGGTAGTTTCAAACTTTAGTGTCCTACCTAAAAATGTGAAAAATGTGAGTCTAC
ACTATCTTCTACAAGACAAGGAATAAAGGTAATTCTAATACATGGATTAAAACCAGTTTC
AACGATTTGGGACAATACCTTTAGAGAGGGACATCTTGACGACGACAAATGGATTGATCT
CGACGACCTCATGTCATCATCATCCTCAGCCATCCTACCACGGTTGAGATCCAAGTCGGA
GTCCCTGATGTCGACCTCGAACTCCTCAACGTCCATGTCATCGTCCTCCAATCCGATCCC
AATCCCAAATTCGTCGAGCCCCGTGAAGCGTTGGTTGCCGTCGTCGCCGCTTCTCGGAGC
TTCCTGTTCTTGGGACACATCATTGTCTAGATTACCCTTCCTATAACCATGGGCTTCTTG
AGGTTTCCCAGGATCGTTTCACCGCACATGGCCGGTAGTGCCTCGTCGTAGTATTTGGGG
GTCGTAGCATCGCCTGAGTTCATAAATGGGCGGAGTTTTAAATGAAGCAGTGGAGCGGGT
CTGTAGGTTGGTAGGTTGGAGACGAAGATAATCCCTTATATACACGATGGTCGCGTGATG
GCACCCCCTAGGCAAGGCGGCACGTGGTAGGGCACATGCATGAGTGACGGGTCACGCGGC
GTGCGAAAGGCAAGCGGTAGGTTTCGGAAGCGAGTGTTTCCATTTAAAGGTAATCTTGGG
CATTCGCCACTTGAAAGATGTGGTATTTCTAGTATTGCCCCTCGGAAATGAATGGACGGA
CTACTGAATTTGTATATTTGGTACCAAGCCATTTTTTCCCAAGATTGTACAACACTTCTC
ATCTAAGAAATAGGTTGTACGACACTCTTGTACTACAATACTATACTCATTACTCACTAG
CACCATCCAACCAATACACTCCACAAAGATCTCTAACTCATCATTGCAAATAACTCATGG
CCACTACTCTATTGAGTTTTTTGGGAAACACTACTCCATTGAGTTAGTAGCATGGATGCA
CAATCATTAGCATTCACATTATACACAATAGTTATATGAATAGGTTTGCCTAGAGCTCAA
CTAGATGTGAAATAATTGTGTTACATCAAAAGTGACATCATTTGTTTGTTCGGTTGAGCC
TTTAGTGGGTTCGATTTTTTTAGTGGGTTACGGCTTCATTAGGAACTTTGAGGTTTTCCT
TTTCTTATTTTTACTTGTTGGATTATGTTGTATATGTAAGTGAAGAAAATAAAACCATAA
AAAAACTTGGTTCGCAACAGAAGCCGCAAGGATTGAGACCCGGCAAGCTCACATCACCGC
CGAGACGCCCCGCTTGAACACCGAGAACTGGCGACTTGAAAGGCATCAGCGCGCGTCTGA
CGCTGTCCATCAGAGGAGGCANNNNNGGCGTTTACCCCCTGATCTGAACCCTACCCGCCC
TTTCG