Contig Data
morexGenes
Links



Map Locations of contig_142517 (2196 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_142517

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_8400 1 930 bp MLOC_8400.1 Available Available LOC_Os01g61140.1, FRAME:+2, EVALUE:2e-12, 13101.m06507 protein retrotransposon protein, putative, unclassified





CDS Structure of MLOC_8400






Contig Sequence (2196 bp)

>contig_142517 2196 assembly3_WGSMorex_rbca.fasta
GCCGGCATTCTCCCTCTTCATGGAAAGCTTGCAAAATAAGAGAGAAAACGCATAAGTATT
GTACCATGAAGTGTAATAACAACCCATAAGGTGATAAATAGCAACATAAAAGCATGATGC
AAAATGGACGTATCAGACCTTGATGCAACCATACTGTTGTAATGATCTCAAGGAGGAACC
TATTACCAGTGCATATGTATTCTCAATATTAACTTTTGATTATACCAGTGCTTGCTTGTG
TAACCAAACAATCCACATGTGGTTCTGGGTAGTAGCATAGGAGCACGAAGAAGAGCATGT
GTGTCAAACAAGTAAAACGCGCGTTTATGTGAAGGGTTGTCCAAACAAGATATTTGTGTC
ATGCGCTCAATTAGCACTCTCCTCACCAATCACAATTAGGGTGTGGAACTCAATCTACAT
TTGGCTTGGCTAGCAGTCGACGGCACCTACATTGAGGAACATACACATAGTCACGCAATG
ATGGAATGTGGGCCAAGGACAACCAGGATACTCAAAGAAGGCGGTGCACTCATTGCAAAT
GCTGATTTGCTGGGAGATCTGGAATGAAAGAAATATTAGGGTCTTCCACAATAAGACTTC
TCTGTGCAACCACATAGTGGTGAAGATTAGAGAAGAAGCAAAAAACTTGGATAGTGGCAG
GAGCTAGATTTCTGGACACCATTTTACCTAGAGAGTAATCCCTTACTTTTGACCTGTGCG
GTCCTCCTATAACTGCCTTAAAAACCCTTGTTCTTCTCCTTCTTATTTTATGAAATGATG
CAAAGCCTTTACCTTCGATTAAAAAAGATCGGGACCACATGACAAAAAAACTCAACTGTC
AAAAAATTTCGGTAAGCAATATTACATTTATAAGAAGCTGCAATAAATTGTTGCTCAAGA
AATAAAAGAAGCATCATGCTAGGCGCAACAACACTCATCGATCTTGCAGTACGCTCCAGT
CGAGGGCTTGCCGCTGAGGCTGCATGCGGTCTGGCAATGGTCTTGACATTTTCCCACATG
TAAGCACACTAGAGAATTCGCTCCATCTTCAACTGCAAGTTACATTGATGATCCATATAA
ATCCCGACATAAATTAAGCAATTAATAGAAACACACAAAGTATGAATCAGTGTACTATGT
TTGTAGGGGGAAATAGTGATGGATGTTTCTTTACAAATTTATGGACACAAATATCCGATC
CAAACTCTAGAGAATAACAAAATTTGGAAACACATGAAAAAAACAGAGATAGATGTTATT
ACTTGTACGTGCGTAGCATGATGATGATGGACATAGGGTTGAAGACATGATCATAAGAAC
CACGAAAACCACAACCATCCAGGTCACATTGCTCGTGGCTGCCATGACGAAGAGATCGAT
GGAGAATCGCTTATTTCTTTGTCGTGTGCTTGAAACGGTAACCCCTAGTCCTTGTATAGT
CGTTTATATAGAGAATAGAGGGTGAATCAAATCTTTGGCATTAAAATGCCTTCCTCATAT
TCTTAGCTGGAAAAAATACTGATATCAATAGAAATATTTATTTTCTTGCAGACATTGATT
GATTTCCAGATACGTAGTATCCTCCTTTTTATGGCAACAACCTCTTTTTTTAGGGGTGCT
AGTATTTTATTTCAGAATTGCTATTTTATATCTCGATGTAACATATTTATCTCACATCTA
AGTATAATTTAAATTATGCAATGTTCGATCTATTCATCTTTAATTATTGTGCAAACTTGA
TCCTCCCTTGTTGTCCATTGTGGTGCTTTTTTGTCGGCTCGTTCGTGTCACGGCTCATTG
TGCGGGGCTAGACTATCTGTTTTTCTTGTCTTTATGTTTTCTTGGATATGTTATTACAGT
TCGAAGAGTCACCTCGCGACCTAAAAAAGATACAATGTTAGTTATCACTCTTCATCGACC
CAATCAGTTATCTCTTGCATTTATGTTCATCAATTAACGAGCGATCTTAACATGCAACAG
GCCATACATGGGCTTATCGTACCCAACTGCATGGCCATTTTTAAAATTTACTCGTCTGGT
CTAATTTGCAAGTGCACACAACATGTAATTAGGGGATTCGTTTTTTGTCTCAGTTAAAAC
TCTGCTCCAAAATATAATTGGGACCGTCATATTTTATCTCAATTACAAATACACCCCCAA
CACATAAGTGAATTGTCAGGACCCCGATCCTAAGCC