Contig Data
morexGenes
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Map Locations of contig_142065 (2977 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_142065

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_8334 1 213 bp MLOC_8334.1 Available Available None
MLOC_8336 2 1071 bp MLOC_8336.1 Available Available LOC_Os09g23810.1, FRAME:-1, EVALUE:4e-32, 13109.m02254 protein retrotransposon protein, putative, unclassified
MLOC_8335 1 290 bp MLOC_8335.1 Not available Available None





CDS Structure of MLOC_8334






CDS Structure of MLOC_8336






CDS Structure of MLOC_8335






Contig Sequence (2977 bp)

>contig_142065 2977 assembly3_WGSMorex_rbca.fasta
GCGCCGTCGGCAGGGCGGGGCGGGAGAGGGGTGGAGGCGTTGGAATTTCTGGGAGTGCTT
GTGTCCCCGACACGTGGGCCACAGGCGGACAAGGGCGTGCGGCGAGCGCGTCCGCGCGAT
GTCCGTTTCCCTCAAACTGGGCGCAAGTTTGGGTCGGGGATGGGTCAAAAACGGATGAAA
TTCGGACATTTGTCCGTTTGGATCTGCGTGTTGGGCCGCGGTATTCGTCCGTTCTACCCC
AAACGGACGCGCGCGGACAAGATGGGGTCGCGCGGTGGAGTTGGCCTAAGACCACATGGT
TTCCAATATGACTAAGATCTACTCCCTCCGTTCCTAAATATAAGACCTCTTAGAGATTTC
ACTATCGCCTACATATGAAGCAAAATGAGTGAATCGGGATGCTTTGCATATTAGCCTCTC
CTTGCCGGCATCTGATAAAAGTTGTGATCCAGGAGAAGAATGACTCTCTTATGGCTCTGG
CTTCGCCCGGCTGACGAAAATGAAAACAAGATGAACATTTAGAATTCTAAGAGTTTCCAA
AAAAGGCTGATCTTTATCCTTTTTGCTCAATATCTAGATGCATTCATCAAAGACAAATGA
AACACATACTGATTTGATTACTCGAATTAGGGAGAACGTCAATGTAACTACATTATGTAC
TGTTAAGTTAAGTCGTGTATATTCATATCATTATACACAACATTCCATACTGTTTTCTAT
TAGAGGGGTTTAAACCATGTAATTTTTTTCATTGCGGACATGGTTTTAGGGTGCCTCTGC
GCCATTTGGCGCAACAGGTCCACTAGTTTACATAGCAGATAACATCAGCAGGTTGCATTG
GGTTACCTAAATCAATAACTAGCTACCACAAAAAACAACCAATAACGCAAAAACAAAGCC
CCAATCCAAACGAACCAGCGCATGCACAACTCAGCGCACATAAATACTCCCTCCGTTCCT
AAANNTAAGTCTTTTAAGAGATTTCATTAAGTGACTACATACGGAGCAAATTGAGTTAAT
CCATACTATAAAATATGTCTACATACATCCATATATAGTCCCTTAATGGAACCTCTAAAA
AGACTTATATTTAGGAATGGAGGGGTAGCAGCTAGAGGCACTACTGCAGCATCATGCACA
CATAAATAGAGATATGTACTGAGTTTTCCATCCATGCACCGGCAAGAAGCACGGCTCATG
TCTTTTTCCTAGCCCTCGACTTCTTGCTCATTGCACTGGCTCTGGGTGTGGTTTGTGTTG
TGGCAGTGGCGGATGGATCGTGGGCAGAGGCGCCATCCCCTGCCGATTACCTGCACATTC
GGAAACAGCAAAACCAATCATCTCATCAGAAATTCTCCAGCTACAAGTCTACACTGTGAA
GTAGGTACATATCGACTTGGGCTATATTCAGTCTGGCTTCTGGCCACAGGTTCACAAGGT
ATTTATACGGCCTCAAAAGCTCGGTGATCTAACTAACCTGACAGCCTCCTCAACTTGCTC
GAGGAAAGGGTTGAAACTATCCATGTAGGCGTTGTACTACACAAAGAATCCATATATTAG
CACATACAGATATATTTGAAAAGATGTGTGCTTCACTGATGAGTTTACGAAGCAGTCTCC
TCACTCAGACCTACCTCCTTCACAATGTTGTCGAATTCTGCGCGACTTTTCTGCTGTTCT
GCCATGGAAGCAGTCTTTACTGAAGCAGCTTCCCTACACAAACACCAAGCCTATGTGGTG
ACATAAAGAAACACGATATTTCAGTTATTTTCAGGCAAACATACTGTTAACGAAAATATG
TGACTAAATCTGCAGTTTTTAACAGTCAAAGAGATGGACAGCTAGTATCGTGTTTCTGCA
CAAACAGCGGCAATAAATACTAACAAGGCCTCACAAGAATCACCAAATTTAATGATGTTC
CCATTTCAAAAAGATTTTAAGTTTTTTGAGAAAACGCAAAAAACTTTTGCGTTTAATTGT
ATTGAAAAGAGAGGGTTTGTAACAATCCTCCTAGGAGGCAGATTACAATGCAATTACAGG
GGAATTGGTGCACATCCCAGGTCTGCGGCAAGAGAACACGGAGGCCGAAAGCTCCGGCTT
TGGCCCAAAGAGTAGCCTCATCCTTAATCTTGGCAATCACTGTAGTGATGGAAGGGCGCA
CACCGTCGAAGACGCAGTCGTTTCGATGCTTCCAAATCATCCATGGGACGAGCAGGGTCG
TGGACGCAAGGCCCTTATGCATGGGCTTGGGGGCGGTCTGCCTTGCATCTCGCCACCAAT
CATGGAGAGCGGCGTCGTTGTCTGGCGGCAAACATGGGAGGTGCAACCAAGACAGGAGTG
CGTGCCATACCTGTCGGGCAAAGGGGCACGCGAGGAGCAGGTGTTGTATAGTCTCTGGCG
CTTGGTCACATAGCGGGCAGCGTTGTGGGTGCGGCAGGTTGCAGCGCGCCAGGCAGTCGG
CAGTCCAGCAGCGGTCGAGGTTGGCGAGCCAGTGGAAGAAGCGCACCCGTTGTGGCGCCC
AACATTTCCAGGTTAACCTCCAGGCCTGACAATGGGTGGAGCCATGGAAGGTGGCCAGGT
AAGCGGATTTGGCCGTGTACGCACCGTTCGTGGTCCACTTCCAACGCACGCTGTCCGGCT
CGTCGCTGAGGGTGGTTTGGGAAACCAAGTGCCAAAGGCATAGGTATTCGCCTATCTCAG
GGAGGCCAATGGTGCCGTGGATGTCGGACGCCCACCGGTTCCCCTGAAGGCCATCAGCAA
CCGTTCTAGATTTGCGGCGCCGTTTGGGGATGCAGGCGTATAGGAGAGGCGCAACCTCAG
AAACGGCGCGGCCGTTGATCCATCGGTCAAAAAAAGGATTTTAAGTTCGAACAAGCAATA
TATTCAGAATAAAGAACATCACTTTAGCGATCATTGCCTCCACTTTCTTTTCTCTAAGTT
CAAGGCACAGTTTACCCTCAATCTCGGAGCTCAAAGC