Contig Data
morexGenes
Links



Map Locations of contig_142051 (2711 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_142051

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_8329 1 628 bp MLOC_8329.1 Available Available LOC_Os03g03810.1, FRAME:-1, EVALUE:3e-29, 13103.m00380 protein DEF8 - Defensin and Defensin-like DEFL family, expressed





CDS Structure of MLOC_8329






Contig Sequence (2711 bp)

>contig_142051 2711 assembly3_WGSMorex_rbca.fasta
TCACCTCAGCAAATGATCTGCTATCCGCTCCCACCTTCCCCTCCCACCAGCCGAATGAAG
GTGGAACCCTAGGTGGCGAAACCCTAGCTTTTCCCCAGAAGTGGCCGAGGAGGGAGGCGA
GATCTGGAATGGGCGACGCTGCGGGGACGGGTGGGGATATCGTCGAAACCCTACCACCGC
TTCCTGTAGCACGCGGGCCTTCTCTTAGCGGGGCCGGGGCCTCTCCTTGCCCAACGCTCG
ACATGGGCCTAGGCCCGAGAATACCCGACTCGTGCGTGGCTTGCGGCACACGGTCGCGCA
GGTGTACGTGGATACTTTCCACGGTCACGCTCTCCTGCGTGTCGGCCTGAGCCGCCGGCG
ATGATGAGCGCCGCCGCGGGCGCGCCTGCGGTGAGGGAGATGAGATAGATGTGAGGAAAG
CCATCACCTCGCGATGTATAGAGCCCGGGACTTTACGCGTGGCTAATCCATCGTACGTGC
ATGAGCAGCGCCAGTTGTTAGCTGTCGTGTTCCTTGCTGCACAAATGACCTGCCTAGATC
ACGCGAAAGCAGCGCACTAGCATGCGACATGCATGTCCTTTCGTGTACAGATCAAATGAG
TGACCGAGGGAACACGCACACAACACACGTGAAAGGAAAAAGTGAACATCCGATAATACG
CAACGCACCGATCCAAACCTCACAGCAACTCTGAGGACGAACCGAGATATCGAAGGGACA
CAACAAGGAGAAGCTATTTCATGTACCCAGCTCGGCCTTGACAGGCCGGCCGAGGTTTAT
TCATGGACATTGACGCAGACACGGACATGGACGCAGACACGGACAAAGGTGCGGACGAAG
TGGAGGCGGGCTAGTAGCGGCAGTGGGTGGTGCAGAAGCAGCGGCGGCGGAGGCCGCGGC
AGTTGCCGCCGGGGAAGCCCTCGGTCCGGCAGACGTTGGCGCAGTTGTGTCCGCGCACGC
AGGGGCCCCTGAACCTGTGGCTCGGCGACTCGCACCTCCGAGCCTCCGCCACCGCCACCG
GGCCTCCCATCTCCCCCGTGGCCGCGAGCAGCAGCACGAGGAAGAGCGCGGCGGAGAGGA
GCTTGCGTGAAGCCTCCATCGATCGATTAATCCTGCTTTGTACTGTATGTAGTTTATACG
AGTGTGTCAGGGTTGGGTGTCGACGGAGCTGCTGTGTGTGAGCACCCCCAGCTCATATAT
AGCGGCACACCGCGCGCACAAACGATGCCACACGACACGAGACACAACGATTTGGCAGCC
AGAGCCCAGAGTGTACCATACGTCTCAAAGAGAAAAAATGGCGGCAAAGCGAAGTAGGTA
GGATCCGACGAAGGTGCGTGCGGCCGTCCGCTGCCTGTCAGCTCTCCAGGACACGGTGCT
TCCGGTACGTACGTACTGCCGTGAGCGTTTGTGTTCAAGCAAGGTGGATGGATTGCTACA
ACAAACTTAATTACGTTGTCTGTGACGCCGACGACTATATGGCAGGTGGACGTCGTTCCG
CCAGCCTGCGACGCGGCCTGCGGCGACCGGTCAAATGTGACGTTTGAAGGATTATAATTT
TTGGAGAAGAGGGGGTGCCCTTCGGGCTCTGGATCGAGTGATGAAGACAAGCTTTTCGAG
GATGCGTCGTTACAAACTGCAATCGTGAGCTCTCTACTTTCTGCGTGCACTCGTTTTTGG
GTTGTTCTTTTAATTTCATGAATACGCGTTATGGTGTATCATTCCATTAATAGGGGGGAG
AAAATACAATGACAGATCTTGAAGAGCATACACTCGCAAGCGCTTAGGAGATCGCTAGGA
GCAGAAGATGGGATGCGCAGCCCTCAAGCTACAAGAGTCAAGTTACGGAAATGTTTGAGC
TAAGCCCTCAAGCGCCAGCACTGGTCCGGGTGCGAGCTTCCTCCTTGATGGTGTGGACTC
GAGGGATGCGGATGGTATCGCGCCGTCAAAGATGCACGTGTTGTGATGCCTTCACATGGT
CCAGGCTGAGAGCATCATGAGGAAGGATAGACCCTTATGCTGGCCTGTTCGGGGTATTCT
AGTATTTTTTTTCTTGTTGAATACACTAGTAGAAAAGAGGACTTTGGTCTAGGGCATCAA
ATCTCATTAGTCCCGGTTCACTCACGAACCGGGATCCATGGAGCATCGGTCCCGGTTCGT
GAGGCCAGGGCGCCGGCCGGGCATCCTAGGCCATTGGTCCCGGTTCGTGTCATCCCTTTG
GTCCCGATTCCAGACACAAACCGTGACTAATAGGCCGGCAACCGTTCGTATCCCCCTTTN
NNNCCGGTTGGTGGCTCAACCCGGGATTATGGGGTGATGGCAACCGTTCGTCTCGCCCCT
TTAGTCCCGGTTGGTGGCTCAACCCGGGACTGAAGGTCCAAACGGTTCCTCTCCCGCGTC
GTTTCGAGCAATGAAAAGCACGAACTGAAGCAGAGTATCGCCATTTCTCTGTTTCTTCTT
CTNNNTCGCTCTCCTCTCTTCTTCCCCTCTTTTCTTCCCTTCTCTTCTTCCACCATGCCA
ACCACTCGCTATAGAGAGGTGCTCGCACATGGCACGACCGAACTCAATGTCGTGTACACG
AATGACAGTGCCACGATGCCGCGTTTTCTTACCTATTTCAAGAAATGGCTTCAAGAGGCG
GAGGAGAATGAGAATTTCATGGGGCTTGATCTGGAGTACACGGCCAATCAACAAGGTGTT
GCCGTCATCCA