morexGenes - Barley RNA-seq Database

Contig contig_141806

Source Contig contig_141806

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_141806 (3067 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_141806

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_8273	1	1076 bp	MLOC_8273.1	Available	Available	LOC_Os06g40080.1, FRAME:+3, EVALUE:7e-110, 13106.m04166 protein heme oxygenase 1, putative, expressed

CDS Structure of MLOC_8273

Contig Sequence (3067 bp)

>contig_141806 3067 assembly3_WGSMorex_rbca.fasta
TCTGTATGTAGTTCCTTAATGAAATCTCTTAAAAGACTTATATTTAGAAACGGAGAGAGT
ATAATTTTGTACTAGAGCTAGTACAAAGTTAAGACACTTATTTTGGAATGGAGAAAGTAT
GCAGCACACAAGTGGGGATGCAAATGGGCCAAAGGGGGGCAGCCCAAGTGGGTAACAGAA
TCTATCGTGCTCCTCCAAGCGCGCGCTATAAGAGAAGCAGCTCCTCCCGTGGCACCCGCG
ACAGTATCTCGATCGCCACCACCCCAAGCACTTCCATTTCGCCATCGTCGACTCCATCTC
CATGGCGCTCACAGCAGCAGCAACCCTCGGCTCCTCCCCGCTCGTACCTATCTTCGTCAC
CGCCGCCGGGATGAACAGCAGCGGCATGTCCGTGTCGTTCGGGGCGCGCAGCGTGCCGGG
GATTTCTCTGGCTATTCATTCCCGGCGGAGGAGGATTGTCGCGGTGGGGGCGGCGGCGAG
AGGGGAGGAAGCGGCGGAGAAGACCTTCGTGGAGGAGATGCGGGCTGTGGCGATGCGGAT
GCACACCAAGGACCAGTCCAGCGAAGGGGAGAAGGAGCAACGAGGACCGTCGCTCAGCGA
GCTGGAGCCTAACCTTGAGGCCTACCTGCGCTTCCTCGTCGATAGCAAGCTTATCTTCCA
GACGCTCGAGAATATCGTCGACCGCGCCGCCGTCCCATGGTGTGAGTCACTGCAAACCCC
CTGTCCTTTCTTGAAGTTTTGCGAAAACATATTCTGTTTTGTCCGTCATAGTACACTTCA
GTTTTACGTTGATGTTGTTAACTTGTTATAATGTTTCCACTGGTTGTTGGTTATGGACTG
GTTTGGCTGGCTTGGTGTGATAAACTTTGTTCTGGTTAATTATTCTGTTTTTTGGAACGA
AAAGAATAGCTGGCCATATCTAGATTGTCTATATTAATCTGGTTTGACGAATAGATGTTA
TACTTATCTGTTTTAGTTGAACTTGTGAAATTAATCCATGGTTGTTTACTTTGAAGAAAC
AAAGGGACCTTTAGCTGCATAGTAATATTATTAACAGTAACATTGTATGGTCACTAGGTT
GGAACTGGAATGTTAGCTCAATGAATGTACTTTGTTTATTCTGCTTAGAACAATAAATGC
CGTAATTACTGAAATATCAGCAGATTCTGTACTGTACTGTAACCTTTTTCTGCCGTAAAT
TACAGTTCCCTAAGAAGGAGCTGGCACAATTCTTTAATCATTGTTGGCTAGATGCTGCTC
ATTGACATTTCAGTTATCTATCGCTATCAGATGGGGAGTTTCGGAATACTGGGTTAGAGA
GATCGGAGGCACTGAAGAAAGATCTGAAATGGTTAAGTGAAACGGGTCACACAATTCCAG
AACCATCTGCTGATGACACTAGATATGCTTCATATCTGGAAAAGTTGTCTGAGAAGGACC
AGCATGCATTTTTCTGTCACTACTATAATATGTACTTTGGGCAATCTGCTGGAGGTCGAA
TGATCGGCAAGAAGGTACCACTTTTCAGCACACAACCTTATACCAAAACTTTCATGTGAG
GTCAAATAGTGTGTGTATTTGAATGGCTTCACATATTGTTGTTAACAATGTGTTGTTGGC
ACCGGTTCTTCTGATTGAAATTCCAAAAGAAGGTAGTAATATGCTATTATTGTATGCACT
CCGTTGAGGGTCACTTTATATACAGATATGTTTCATATATCCTTCTTCTGCTATATGCAA
ATACTTCTACATTCGTTCTATTGCTGGCCATTTCGTTGTCGNNCATGAATCCTTATCTTT
GCTTATCCAAAACAATTCAGGGCATCATCGCTGACTGTAATCTGTCAGTGTGTTGCGAGA
GGTTCTTGTTCCTCCGTTGATAAATATCGTTTAACCTAGTAATCATGCCCTCTATTCTTT
TCAGATTGCTGACAAGATTCTGAACAAAAAAGAGCTGGAATTCTACAAGTGGGAAGGTAC
CCTGTCCGAGTTGCTGCAGAATGTCCGTGAAAAACTTAACCAAGTTGCTTCTGTAAGTCC
AAAAGCGTTGATTTCGTGTTCCATATTTTTCTGCCCGTGTGTCTCTCAGTGTCTTACCCC
GATCGCATCTATGCTCAGAGCTGGACCCGGGAAGAGAAGAACCGCTGCCTGGAGGAGACT
GAGACGTCGTTCGCCTATTCAGGAGAGCGTCTGCGCAAGATATTCACCAGAGCCTAAGGT
TTTACGTTGTATCAATTTCTTGTCAGTTGTATCAGATCGTCCGATGGTATCGTAGTACCA
CGATACTATGTGATCTTCATTTTTATTGTTCTCAGTCTTGGGGAGCTCACATGAGCTGGT
GTGCTAGGCAGCCCAAGTTCAAGCGTCAGCACTCTCTTAATAAAATACCATTGTGGTTCC
TCCACCGTTAGTCTTGTTTTTCATATTGAAAAATAGGGATTTTTTCACTGTTTTGATCTA
TTGTTTGAAGTTGTGCATAAAATGAACCCAATTTGAAAAGATTTGACGATCTAACCCTTT
TTGAAACGCCATAAGCCGTGGCGTTTCTGCCCCACTATGAAACGTCAGTCTACCGAGGCG
TTTTCTGGCACCACCATAACGCCAGTCCACCGTGGCGTTGCAGCCCACCGCAGAAACGCC
AGCCGTCTTGGCGTTGCAGCCCACCTCAGAAACGCCAGAGGCCTCGGCGTTTCTTTAAAC
CAGAAACTGTCAACACTTTTCCAACTTACACACAATATGAAGTTAGTACATGTTCCAACT
TGCTAGTTTGTTCCAGTACAGATTTTGATTCAAACTAGCACTTCCCATACCATAGCATTC
AACCATCCGCATATCAAAAGTATAAGTAGCATGACATGACAAGTTCACTAGTTCATAAAA
CTTGAAACATCATAAAACTCCATAAGACAAATTCACTAGTTCACAATTCATACTTCAAAG
TATTTAAGCCAAATTCATACTTCAAACTTGAAACTACATAAAACTCCATAAGACAAGTTC
ATACTTGAAACTACGTAAAACTCCATAACCCAAGTTCATACTTCAAACTTGAAACTACAT
AAAACTC