morexGenes - Barley RNA-seq Database

Contig contig_141789

Source Contig contig_141789

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_141789 (2646 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_141789

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_8268	2	1298 bp	AK365386	Available	Available	None
MLOC_8269	1	302 bp	AK365386	Not available	Available	None

CDS Structure of MLOC_8268

CDS Structure of MLOC_8269

Contig Sequence (2646 bp)

>contig_141789 2646 assembly3_WGSMorex_rbca.fasta
GTGCGGTTCGCGGCCGCCTCCGCCGGGAGCGACGGCCGGTACTCGTCCAGCCCGCCGCAG
GCGCCGGCGAGGCGGGCGAGGACGCCGAGCAGCGGCGCGCTGTTGTAGGTGGCCGCCTCG
GTCTGCTCGTAGTTGTTCCTCTCGTCGGCGAAGTCGTCGTACTCGTCGGGGCCCCCGACG
ACGGCGCCGTCCAGCGTGTTGGGGTTGACGGCCTGCTTGCTGTACCAGCTCGCGTAGCCC
TCCTGGCAGCTCACGAACGACGGGTCCGTCCTCACCGACACGATGGAGGCGCCCCGGTGG
TGCACCTGCCGCGGGTAGTTGAGCCCGTACCCGACCATGTAGCTCGTCGCCCTCGGGTTG
TCCCCCAGGATGTAGTTCACCTGGGACCTGACGAACGCGAGGATCTCGTAGGGCCGCGCG
GCGCCGCCGGGGCACCGCACGGCGCCCCCGCCGGCCACCGTCGCGTAGTCGGCGTACGCC
GTGAGCAGGAAGGAGGCGCTGGTGACGAACTGGAGGTTGTTCCACCGCTGGTGGTACATG
ATGCCGCCGGGGGTCCTCGGGACGTTGACGGCGCCCTTACCGACGCACGAGCACACGAAG
AACTCGGCGTTCTGCCGGTACCTCTGCAGCGCCGCCGCGTGCTCGCCGGCTCTGCCCTGA
AGCAGGAACTTGGCTGCCAGCACTTGCACGCCGGGGTACTTGACGTCCCAGCCGAACTGG
TTGATGGACCAGCCCGTGCCGCCCAGAGCGTCGCCGTTGCGCGCCAGGTACTCGAGGTAG
AATCGCTCCTCCGTCGCCTCGAACAGCCACGCCGCCGCCCATAGCAGCTCATCCTGCACC
GCACCATCGATCCCACATGGTTGAAAACAATGTCAGAATGCGTCTCACCATCTGAACTCA
TAGATATCGACGTCTGGTTTCAGAGTTGCTTATTACCCCGTATCCGCTGAAGGACCCGTA
GTAATTCCGCGCCACGGTGATGCTGGCGTCGTACTTCCCACGGTACTTGTCGGCGAATTC
GAACAGCTGAACAAAAGCATATCAAAGGATCAGACAAAGTAATTGTAAACTTATACATCC
AGTTCTTGTCAGATTTCTTCAAGTTCAGTCAGGCTGCGGGATCGGGCCAAAATATACATT
ACCTGCTTAGAATGTTCGAGGAGCAGGTTGGCATAGCCCGGATAAGTGGTGCGGAAGACC
ATCGACGCGGCGGCCATTGCAGCGGCCGTCTCTCCGGCCAGGTCCGACCCGGGGTTCTGG
GGATCAATGCGGAACGCCTGGCGGCTCGTCGTCATGTCCTCGGGCCGCTGCCAGCAGCCG
TGATCCGTGTCGCCGTCGCCAACCTCGCCGTAGAGCACGTCGGGCTCGGGGTGCGCCTTG
ATGAAGTAGTCCGTGCCCCACTTGACGGCGTCCATGGCGTTCTTGAGCTCGCCGGAGGCG
GCCATCTGCTTGCCGTACTCGAGGATGCTCCAGGACATCATGGTCACCGTGAACGCCATG
GGCAGCCCGAACTTGACGTTGTCGCCTGCGTCGTAGTAGCCTCCCACAAGATCCACCTAA
AATGACAACTCCATCAGACCCAAGAAACGTAAACAATTGACATTATATGTTTGATCAGTG
CAATGTAGGTAAAGAAAATATAATCCCTCCGTTCCTAAATATAAGTATTTGTAAAGATTG
TACTACAGACTACATACGAAGCAAAATAAGTGAAACCACACTCTAAAATATGTATATATG
CATCCGTATGTAATTTTTAATAAAATCTCTGAAAAAATTATATTTAGGAACAGAGGAACT
ATATACGTACTCCGTTGGCCTTGCCGTCGAAGAGGCCGGAGCTGGCTCTCCAGGTGACCC
TCTGGTCAGGGGGGAGCGCGCCGGACCTCTGCGCCTCGAAGTAGAGGAGGCTCTTCTTCA
ACGCCATGGCGTAGTCGTGTCCAGAAACGAGCTTCGCCATTGACGCGAGTGCCATGAGAC
CGATGATGGCAGCAGCAGCAGCGACATGAGCGGCACTGCCGTTCCTGGCCATTGCAGTGC
ACCAAGAAGGTGTATGACACGGCAGGGAATATAGTTGGTTGATTGGCCTGGAGGGAATAG
CTCAAAAGGGAGCCTTATATATACACACCCACGACATGAGCGACATACTGCCGCAGGTAC
ACCTTTATCATCTCTCCACGGTCTCACTACTACGTACTCTTTTTCTTTGGGATAAAGCTT
GAGAGTGGCATTGGGATGTGCATAAAAGATGGTCATGTGACTGACCAAGGCTACAGGAAT
TTAGAGTGGCTGTGCTTTACAAGCACGTCGGACATGCATGCATGCATGGGGGGCAGGAGG
AATTGAATTGAAAATGCAATGCACGGCAGCAGAGACGCGGTGGGGATACACGGTTTTACA
CATGATTTTGCCCAATTCTTGTTTGCATGTTCTCTGATTTAGCTTGGAAATCGTGTGGTT
CAGTTTACTTTTTACCTTAAGCTCTCACCATTTCCCCTTTTCCTGGATCATCATGTGTGT
AAACAAAAAAGTTAGACGGCGCGGCGCGGCGGGCTCAGTTAATCAGGCCGCTGATCTTGG
CAGCACTAGCAGAGGTTCCTTCCATCCGGCACCGAGTCCGCGCGCCGCAACCTTTTGTGT
GCACTA