morexGenes - Barley RNA-seq Database

Contig contig_141246

Source Contig contig_141246

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_141246 (2644 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_141246

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_8134	1	1197 bp	MLOC_8134.1	Available	Available	None

CDS Structure of MLOC_8134

Contig Sequence (2644 bp)

>contig_141246 2644 assembly3_WGSMorex_rbca.fasta
ATTAGTTAGTTAGCTTATTATTTTAATAAATCAAAATGATTATAAAAAATTTAAAAGCGT
GTGGTATTTTTTTCTCCCGTTGCAACGCACGGACCCTTTTGCTAGTTATATACTAAGTGC
CTCTTCGGCAACGCCCTTGGAGCGGAGCCGCAGAGCTCGCTTTGATCAGCTTCACAAATT
ATAACTGAACGCCACTCCGCTCCGGCGCAGAGTCGGGGAGCGGAGGAAATCCGAACACGG
CCTAAGACTACTAAGCCCGCAAGGATTCTTTTTTCTGGATTTTTTGAACCATTTTTTAGT
GCCTCCGAGAAAATAACACGTGGCTCTGGCTATACCTTTCACTCCCCTCGCTGCGTTCCT
CTGTGTATGGTGCATTGATATGCATGCATGTCCAAACTCGCTAATTAACCAGGCTGCCGC
TTTGTACTTTTCTCCACCGCTTTGACCGTTTTGGATTGTCTCCACCGCTTTGACAAGGAT
GTCCTCCTCGTTGCGTACAGTGCACATGCATGTCCAGACTTGCTGCCTCCATCGCTTTGA
CAAGGAAACTTGCTGCATGTACTCCCTCCGTTCCTAAATACTCCCTCAGTTCTTAAATAT
AAGTCTTTTAAGACATTTCACTCATAGTCTATATACGAATCAAAATAAATGAATTTACAT
TCTAAAATACGTCCATATACATCCGTATGTGGTTTTCTAGTAGAACCTTTAGAAAGACTT
ATATTTAGTAACGGAGGAAATATAAGTCTTTGTAGAGATTTCACTATTGGACACATACGG
ATGTATATAGACATATTTTTTATTTTGCTTCGTATGTAGACATCTAGTAAAATCGTTTAA
AAGACTTATATGTATTTAGGAACGGAGGTAGTAGTGCACATGCATGTCCAGACTCGCTGA
TTCATCAGGTTGCCGGTTTGTACTCTTCTCCACCGCTTTGACGCTCGGTCTTCTCAGTCT
CTCGCTAGGAATCCAGTCAAATCATGTACGACGACTACACTGCCGAACGCGGCTATAAAA
GCCATCCTTGCCGGGCCAACAGATCTAGCTCATGTTGGTGACATTATGCCAAGCTTATAA
AGGGACTCTCTATCAGAATTAAGTTTTGGACCGCTACTTGCATAATATTAGTTAGTATAT
GTTTTCAGGTAGATCAACAAACATGTTGCCAATCATATATCGGGTTTTTTTCACTTATTC
TAGAGGTGTATTGGCTGGTTTTGTCTTGTGCACCGCTGCATGGTTCATGCATGCATGTGG
CCATGTTTGCCTGTTGTATAGTTCACTCTCTATGCCATCGATGGACACGTTGTGTTCTGG
GTTTTTCTGGTGGGTTTCATTTTTTTTCCTCTCTTTTTGCCTCCCTATAAGTAGCTCAGC
CGCGTTGACGACGCCGGGAACGAACGTTGCTCTTTCGTCGTCTTCCTAGCAAGCCCTTCC
ATTCATCTCCTCTTCATTGCGTCATCAACCATGAACTAGTGAGGTGCACACAGAGGTCGT
GGCCGATTGAGGAGGAACTCCTTCTGTGCGGGGTGTCGGCGGCCTGGATTTCCATCTCCC
GAGGCGACACGATCATCCCCGACCCAAATATTTCCCTGAGGAGCACCATCGTGCCTCGCC
ATCGGACGGGTCACTGCAAGTACTTCTCGATCAGTTCCCACCACCACAATAATCTGCCGG
TTCTTCATTTCCCCCATCACCTACTAGCCAAGGTCCACCTCTGAGTAAGCTCCCTTGGAT
TCAATTCTGGCTTCTCAAGCACCCTGATTTTCCCCGTGATTTCTTTTTTTTTTCGTGATA
GACCTGCGTTTTGTGGTGGAGCAGCATAGAAATCTCTATTTCTTCACTATTTTTTGATGG
TTTACTCGCCGAAGGTTAGATTGGCAAGAGGTGGCAAGCCAGTAGGAGGCAACCTCAAAA
TCAATGGCGGTGAGCCGGTGACGACGATGGTGGACACAATGGTCGAGGGAAGTTTTTATT
TGTGCTGCTTCTTTTTCTGAATTACCCGGATCACAATCACTTGAGTGTACCGTTTTTGCA
GTTTTCAAACCATCCATCATTGACACCTACAGGATCCTGATGCCACGGTAACTGAAGCAA
AGACTATGCTAACTAATAAATCAGGTATATTTCTATATTTTATCCTGCTGGGCACTTTCA
GTTTGATTGATGTTCATCAGGCTATCTATTGTTTTACATACAACATGATGCCCATATGTG
CATTCTGTAGGATTTAGTACCAACCAAACTAAGAAAGCACTCACACCGACCAAAATACTA
TGTTGTAAGGTTAGGCCACTTGTCAATAGCCTCGATTTACAACATCTAAATTAGGTGCAC
AAACTGAATACTAATTGTTATGTGGATTCACAGATATTATCGGTCTGACTGTTGTAGTTA
CTCAACCTTCCTTTGTCACTACTAGAAACTGGCAATGAAAACGCCATGTCTACATAACTA
AACCAAGTGACTAAAAATTTACGAGATACGGTACGACTTTAAAAATGAAGTATTTCTGTA
CATGCAGAACACAGTTACATGTATGCCTTACAATTTCTTTGTTATTTTAGAAGTGAATTT
TACAATAGATGGACAAAGGAGCAAGGGACAATATATGCTGGCTTCCACGGTTCTCTTAGG
AGCA