morexGenes - Barley RNA-seq Database

Contig contig_140710
Source Contig contig_140710
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_140710 (6743 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_140710

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7970	1	575 bp	MLOC_7970.1	Available	Available	LOC_Os04g22120.1, FRAME:+3, EVALUE:9e-20, 13104.m02050 protein protein kinase, putative, expressed
MLOC_7969	1	1532 bp	MLOC_7969.1	Available	Available	None
CDS Structure of MLOC_7970

CDS Structure of MLOC_7969

Contig Sequence (6743 bp)

>contig_140710 6743 assembly3_WGSMorex_rbca.fasta
CAGATCCATATTCCAGTACAATCAAATAATTATTTTGTTCTATTCACATTAATTTTTTTA
TTATTACACCTATAATGTATGTATCCTATTTCAGATCCATATTCGAGTACAATCCAACAA
TGGTTTCATTCTATTCACATTGGACAAAGATACTAGAACAGTGTACATTTTGAACCCTGC
TCCTATTAATCATTTACAGACAACCCACTCGCAAAATATGTGCACAAAATTATATGGATT
GCAAAACACTTACCAAAAGCAATGTCGAAAACATGTCCTGTGTCTAGATGGAATGAGAAT
ATTCTCTTATGGCATCAAAAAATCATAGATGATATTCCAGTTTTCAACATGTATTTTTCA
AGGGATGAATATTTTATAGTGATTATTTGTTGTTTTGAAAATGAATAAAATTTAAGTTAC
TAACATATATATGCTTATATATAAGGGAACTCTCTGGTTATATTGTTCCCCTATTCATGT
CCACATGGGAAGATGAAAGTACGCATTTGCCATTTTTAAAGGTAAATATCTCAACCATAT
AGAACATTAATATTATAGTTAAACATTTGATTCTGATATCATTTGTTTAAAAAAATAATG
GATGTACATGATGGATATGAACTCAGAAAATTAATTTTGGGCCAACTGTTAACATTCAAA
GGACAATGAATGCGAAGATAACATGTCTGCAGGTGTACGATAGTTGTATCAGGAAAATCC
AATGTAAATCGGGTAAAAATAGTACGATTCATAAGATTTCATAATAACGAATTATATTTT
CAAGATTTATTGTTCGGTCGTGCCAACTTCCATTTTCTTAAAGAGGACGTACTTGCTATT
TCTGAAAAAAGAAGCTTCGCTGTTGGCTGACATCTTTGATGGTAGTTTTACCTATGTAGC
AAATGAAAGGGCTTCTCATAATTCAATAATTAAAGACCAATTGGGTCAATTACATATAGT
TGGTTGTAAATAACATTTAATTTCTAGCTTACAACGGAATCTAGACATGTATCTTTAATA
ATATTATGTGCTAGATTATGGTCCTATGTATTGGTTGAGATTATCATGTTGTTTATCATC
GATATTTTTTCTTACCCGGTGCAACGCGCGGGCATTTGTATTATGTGATATAAAAAGGCC
ACGAAGCACCAGGCACATCAAACACTGCACTACACCTGGATGCTGCCACGAAGGTGCAAA
GAAGGCCACCACGTGGGACCAAAGACGGCCACGAAGCACCAGCCCATTACATCAAGTAAA
ACATCAGGACGTTTGTGCATGCATGAAGTACACGAGGAAAGTATTTGGACTAATTGGCCA
ACATCACCACGTGTGTGGGCCCCTACCTCTAAAGCTCTCGGCCACACCATCCGGTGCTTG
CCGCAAATTTCAAGGAGAGCTCGCAGCGTACGACTTGAGCAGTCCAATCTGTGGACAACA
GCTACCGACCCGACGCAGTAGCGAACCTGTAATAAATAGTTAGTTTAGGTTAGGGTTTAG
ACTCTCATTTTATTGTATTGTTTAGTCATTGCTACAAATTGCATCTATGAGACGTGTAAA
ACTACGGTCTTGCCAGATTCAAGTGGAACCGCACCATTATCGTGTGCTTAATTCATACCA
TCAATTTAGAATGCAATTCATCATCGTTCTTGCCGGTTCTTCAGTTGCTTGCAGGAACTC
GAACCTCGTGTTCAGGTTGATCGTACCTACGGCAGGATCAATAATCATCGGAGATTGGTT
TAGCGATTGCTAAGGCGTATCGTCGAGCACGGTATAGTCGGATCGTCAAAGTCAAAATCC
ACCAAATCGATAGTTATCCCCACTCTCATCGAAAGATCGATCAACGCGTACATCGGGGGG
ATAGAAGTCCAAAGAGACAATGTCTTTTTCATGTGGTTGATGTTCTGCATAATGTTGTTG
TTGTTTTTAATTTTCTCTTGACACCTTTGTTTGTCTGTCTAGGAATACAAAAGGTAGCAT
CGCGTTTCCTCTTTTCAAGTATCATCTCTTGGGATATCTTGATGTTCTTGTTGTTCTTTT
CTATTTCAACACGCTTCTCCATGGGGAGGGGGTCGATCTGGTTCTATTGATGGATCCTTG
CATTCGTGAATTCATTTTTCAGGACCACTAACATGGGGTCAGTGACTGTACTGTTGACTG
GATATTCATTTTTGAAGCTTCTGGCAGCTTCTGTTATCTTGGTTTGCACATTGTGTGTCA
CTATGAAAACCTCATCTTTATATTATATATATATATACATAAACACTATTCTGATCTTCG
GATGAGAATAACTATTCTGATCCACACTGACTCGTCCCAGCAGTAGCACTTGAACTTCCA
CGGGTGATAAGTTGAACTTCCGCTAAAAGTGTCCAAATTGGGCTTGCGATATAAATTTGA
AAGGTATGGACACCCTCGTAACACCCTAAGTTGAATTTTTGTCAAAATGTTTACGGTTTA
AGAGCAGTCTTGAAAACCGTTTTTGTTCATACAAAAAAATGTGAATCGTATTTTCAACCC
TATTTCTAAACCGTTTGTTGGAATGAGGCAAATAAGATGGCGCTCGATAGCTACTACAAA
TCCGCTCATTTCATGCATTGAAAGTTTTTCCAAATTCACAACGGTTAAAGAAGAATTTAA
AAAATGACGGAATTTCTAAAATCGAACAGGCGGGTTCATATTTTGGGATTAATTTGAAAA
TGGGTAGTTTGATCGACGCAAATGATGGTATTGGAAAGCTTATGAAAATGCAAAGCTTTC
CATATGAAAAGTTTCTTCCAACTATGAACGGTTTAAAAGTAATTTAGAAAACGGCAAAAG
TTGTACCGAGTTCGTATTTTCATGTTAATTTCTCAATGGTTTCTCGGAATGGAGCAAATG
ATATGGCATTGAAAAGCTTGAACAAATGCAAAACGTTTATATGTAGATTGTTTTTTCCGA
ATCCTTACGATTTTAAGCGAGTTTTAAAACAGGCTTCAAACATTTTTTGCCGTTGTTTTT
ACAAACTTTATCGGAATGAGGCAAACAATATACAGTTGAAAAGCTACGAAAATGCATAAC
TTTTTCATGTAGATAGTTTTCTGTGATTCCTAGCCGTTTTCAAGCAATCTCAAAAATAAC
GAGATCATACGTTCTCTCTTTATCGCTAAACATAACCTTAAAAAATGCACCGCGTGAAGA
ACTTGACCTTCTCACCATGTCCACTTGAACTTCACTCTATTTTTCACAAGCAAAAATAAG
CTTTTTATAAACATCGAGCTACTTTATTTTTCTAATTTGTACTTCTTGGTTTATTTCTTT
TAGTGACATAAATACCCTTGTTCTGTAACAAACATTGAACTAATTCGTTAGTTAAATTTG
AACTTCTAGGTTTTTTATTTAGAAATGGTGAAGATCCTTTTTATGAATATTGAACTTCTT
TATTTTTAGAACTTGAACTTCCTGTTTTTTATTGTCGAACTTCTTGTTTCTCATTCTTTA
ATACCGAGGAAAATATGAATTATGTATAAAAATTGCACTGCTCTTTTTTAAATTTGGACT
TATTGGGGATTTTTCAATGATTTATTTTTACATGTAACCACTCATGTTTATTTGTTTGAA
TTTCAACGAAAAGACACTTCTTGTTTAGACATCACAACAAAGAGTAGCGATTGCAGAACT
TCTTAGATTGGTTACAACAGGCACCTAGAACTCAACTTGTAAAAAAGATGATCACCTGAA
TATCAATAAACTTCTGAAGTGCATGAATTACTACCATCCAAACACTACATTTGTTATGGC
ACAAAAAACACCCTGGATGCCATTTTCTAAACTTGCTTAGCATGACATCACATGGAGGAA
GTAATAATGCGCGGAAGAAACAAACGTTTTCTGCCAGGAGCTTCCATCGTCACATGGTTA
TGAGAAATCAACTCACTGTAACAGGCCTACACGGTTCGGCAGTGTCGTCGGAAACTTGCT
AAGATGAAACAAAGATGTCGTCGGAAAGTAATCGGTGATAGGGGCTGGCCTAACAACAAA
GACCAAAGTTGACCCTTTAATAGAAACTTGCTAAGATGAAACAGAGATGTCCCTTACAGT
GCTGCAGAATTCCATGCCATCTACTTCTAGTTTGGAAAACATACACCAGTGGCTGCTCAA
CGACAACCTATTTTCCTCCCACAATTAGAAATAGAAAGCGGGCATGTTCTGCTACTATGC
CAGTTTATATCCTCATCAGAACTTAGAACTCAGAACTATAGCAATGGTCTGCCGAATCTC
TGCGTGTGCTTCTTGCTCCTCCTTTGTTTACATATCCATCATGACATCGCTGCCTCATTC
AATCACGACTCCTTCAGCTCCGGCGATTTCAGAGCGGAGGACGACACGAGGATCACTGAT
GGCAGGATTGACCTCCTCGGCGACAAGAATTTTTGCAGGCTATCGAGCAAGGGGACGCGT
TCTGTACAAGCAGGCGCTGCAGCTCTGGGACGGAGCCACGGGCGAGGCGGCCAGCTTCAC
CGCCAGCCTCAACTTCACCATCTAGTCTCTTCCTGATCGGAGAGGCAGCCCTGGGCACGG
CATGGTGTTCTTCGTCGCGCCATACATGCCCGAAATGCCACAGGAGTCTTATGACGGCTG
CCTTGGGCTCTTTGACAAGACAACCAACCTGGCGAACGGGTCCGGTGGTGCCAACTTCAT
CGCCGTCGAGTTCGACACCCATCATGACGCGTGGGACCCGAGCAGCCGACTCATCAGCAT
AGACATCAACAACATCGACTTAGAGCATGGTTAATAGTATAGCCAACTGCTGGCTATAAG
CCCATCTTATAACGGAAATTGCTTTTGGCTCCCGAGCTCCATGGAGCCCTTTAAATTTGA
NNNNNNNNNNNNNNNNNNNNNNNTATTTTTACATTTCAAAAAATTCTAAAAAAAAATACA
GGGATAAGTGAAGGCGTAACACACATGTGTAAATTTTCAGAAAAAATACATTGAAATGAG
GGTTGTGCAAAAAAGACAAATCTGAGGCTTTTTTACACATGACACTATTCATCATTTCAG
ATCATGAATTTGTCTTTTTTGTGCAGATCGTATTTCAAGGTATTTTATCCTAAATTTCTG
CACACATACGCATAACATCCTTCTTTACTTCCATATTTTTTTTAGATTTTTTTGAAACTG
AAAAGTTTGAATTTTAAATTATTAAAAATTTCGGCCTCCATGGAGGCCAAGCTCCAAATG
TCCGCACTCATCTTATAGCTAGCTTGTACAATAGTTAACTATAAAAAATACTACTTTCAT
CATATATGATCCATTTTTTATTCTCACAAAGCACCTAGGAGCACGTGCTAGAGCTGGCTC
TTCAAGAGTCCGCTTCCCTTCTCTCTCCTCTTCTCTCTCATCCAACTCAACAAAATATAG
TATTTTAATCCTTACAGCCTGCTAACTGTACCTTATTGTACTTGCTCTTAAGCGACAACT
TCATGATCTTCCCCAACAACAGCCTCGTCGATGCCGGCGTTATGTCTTTCCACGGTGAAG
TACGACAACACCACGACGAGTCTGGACGTCGTCCTAAGCGTCGTTGGCAACACATACAAG
TTACAACCTCGCCGCCATCATCGACTTGAGAGCCCTGCTGCCTCCGTAGCTCTCCATAGG
CTTCGCGGCGTCCACCGGCGCAGCGTCCGGCAGCAATCGAACAGATCTGCTGAAAATTGA
CACTTTGGACTGCAACCATACTAATTACTGCACAAAATAGCGTCTACAAAATCAAAGGAA
TACAACTGAGCTAGGTGAAGAACATCTCGCCGGAGGCACTTCGAGCCGGAAGATATGATG
GCACTTGAAGGGCTTGTTGGAGGAGAGCTTGCTCATGGCAGGATGGGAGGATGGGCTGCG
CAGGAGGTGAGCGCGGCAGGTCGCATCAGAAGGGAGGGAAGGTCGGGTCGGAGGGGAGGG
AAGGTCGGATGGGACGTGGCAACACGGTGTCGGCCATCACCGGGAGGAGGTACGCGGCAG
CTAGTTGTGGTCCGCGAGCTTCGATGGTCGATGGCATCACCAGATGGATCCATGGTGCTC
CGTCGGTGGAGGAGCACCACCGAGAGTAGGCTGAGAAGGTAGGGACCGGCGAAGGCGCAC
CACGGCGGCGAGGAAGCAGGGGGCACAGCGGCGGCAAATAGGGAAGGGACGTCAAGAAAA
AGGGAGCCCACGATGGCGGCTGGAATGCGGCGGGGCTCGGAGATCCATGGTCCTGCACGA
CACACTCGATCCAGGGCCGCCGCTCGCCGGCGGCCTATCGGGTCTAGGGCTGGCGGCGGT
GCGGGGGGTCAGGGGTGGAAACAAATTGAGTTTTTCACTGTTCTGACCCACTGGCGTAAA
ATAATCATGGAACGAACTCGTTTCGAAATATATTCACGTTTTGACCCTTCTTGAAACGCC
ATAAACCGTGGCGTTGCATGTCTATGTAGAAACGCCACTCTAATGTGGCGTTGCTGGCCA
CGTGTGCAACGCCAGACTCTTGTGGCGCTGCTGTCCTTATGTGCAACGCCAAGCACCCTA
GCGTTTCTGGGCGTAATATCTGCCCATCCCGACCTCGTCGCCCACCAACCACCTATTCTC
CACTTCTTTCCTTCTTCCTTTGGCGAAAAAACTCTCCCTCCTTCTTCAAATCTGTGACAG
CCCGATGCCGACGNNCCAGAAGATTCCCCCTTCTATTTCGTTTCTGTCGTGTGATTAGAT
TTATTCGTTGCATCGTCATGTAG