Contig Data
morexGenes
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Map Locations of contig_140601 (3944 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_140601

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_7936 2 3596 bp MLOC_7936.1 Available Available LOC_Os11g32650.1, FRAME:+2, EVALUE:0.0, 13111.m03183 protein chalcone synthase, putative, expressed





CDS Structure of MLOC_7936






Contig Sequence (3944 bp)

>contig_140601 3944 assembly3_WGSMorex_rbca.fasta
AATCCTTGAGATACAGTCAACACACATTAAGAGGCAAAAAGTATATACCCATGGTTGAAA
AGCTCACTAACAAGTGTATTAAAACCAAATTACTTAGCGAAAGCACAAGAAAACACTTTC
GATTTTCATCTGCTGTTTCCCCATAATACATAATTACATAGTGCTTACAGCATGCACGCG
GATCAATTATACTCGTTCTCGGTCGTCGTTGATTATTGCATATAACCAATACATAGAAAC
CGGTTTAGACCCATAGTTTATAAACGCTAATAACCAAACCGTTTAGACCCATAACCAACT
ATACCCAAACTGCTTTCTCTACATACCCAAACTAAAAACAAACTAAAAAAATCTCAATCC
AATAAAACCTGAACCAATCAAATCCAAAGTAAAAAACCGAAGCGTTACATCCGATTTTTT
AATAACCAATCTCACGTTTAGTCATGGGGCGTTATTGCATGTCGATCAAGGCCGTAGATC
AATTCACAGCAAGAAGCTTGCTTGAGGAAACTATCATTTACTCAACACAACCTCGATCGA
TACCCAATCTGGATACATAAGTGAGCAGAACGCACAGCCGTGACGACGATGGAATAATAA
TCCCGACCGGCCGAGTAGAAGTGTAAAGTCGCGGCGAAATAGTACTACAGTAGGAATTAG
CACCAAAATCTAGATGAGCTGTGTTGGACGGCTGAAAGCGTCCCAACCGCCCGGTCCGGA
CATTCTGAGAGCTCGATTTGGCGAGCCGCATTGAAGTTGCCCTGACCCGGAGCCATAGCG
GGGCCTGAAAGCGCAAATCACTGGAGCAAATATGGAAAAAATGTTGTTTCGTTGGTGACG
CAGACGGCCACACCCCACACGAGCCTATCATTATACCTGTGGTAGTAGCTGAGCGGTTGA
AGCGTGCAACTGTCTGGCCAGATGAATGCACACGAGTGCGTGCAACCGGGAGGGGCGCAA
AGCCAAGCGACCCAACTAACCCCGGCTCGTCCACACGGACGGTAGACGTGTCTGCCACAC
GCGCCGCCCGTCTCCTGCCCCAGCATTCGTGTCCCTCCATCCGCCCGTCCAACTGACCAA
ATCACTTGTCCCCTCCCTTCCCGCCTACGAGTATATATCCCTTTCCCCACACTCGTACGT
ACCACCACACCCAACCACTACGGCCAGCACCTGTCACTGTTGAACTAGCTAGTCAGCCGC
TGGTACGTAGAGGTAGAGGACTAGCTAGAGATCAATGGCGGCGGCGACGATGACGGTGGA
GGAGGTGAGGAAGGCGCAGCGGGCGGAGGGGCCGGCGACGGTGCTGGCGATCGGCACGGC
GACGCCGGCCAACTGCGTGTACCAGGCCGACTACCCGGACTACTACTTCAAGGTCACCAA
GAGCGACCACATGGCCGACCTCAAGGAGAAGTTCAAGAGGATGTGTAAGCTCAATCAATT
CCATTCCATTCCATTCTTCTTTGCCGTCGTCTCCTTTGCCTTTTCTCTCTCTGATGATGG
ACACGCGACCTAACAAACAATGCTCCATTGCAGGTGACAAGTCGCAGATCAGGAAGAGGT
ACATGCACCTCACGGAGGAGATCCTGCAGGACAACCCCAACATGTGCGCCTACATGGCGC
CGTCCCTCGACGCGCGCCAGGACATCGTCGTCGTCGAGGTCCCCAAGCTCGGCAAGGCGG
CGGCGCAGAAGGCCATCAAGGAGTGGGGCCAGCCGCGCTCCAGGATCACCCACCTCGTCT
TCTGCACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAGATGCTCG
GCCTTCGTCCGTCCGTGAAGCGCCTCATGATGTACCAGCAGGGCTGCTTCGCCGGCGGCA
CCGTGCTTCGCCTCGCCAAGGACCTCGCCGAGAACAACCGCGGCGCGCGCGTGCTGGTGG
TCTGCTCCGAGATCACCGCGGTCACCTTCCGTGGACCGCACGAGTCCCACCTCGACTCGC
TGGTAGGCCAGGCGCTCTTCGGAGACGGTGCCGCCGCGGTGATCGTCGGCGCAGACCCCG
ACGTGTCCGTCGAGCGGCCCCTGTTCCAGCTGGTGTCCGCGAGCCAGACAATTCTGCCAG
ACTCGGAGGGCGCCATCGACGGCCACCTTCGTGAGGTTGGACTCACCTTCCACCTCCTCA
AGGATGTGCCCGGGCTCATCTCCAAGAACATCGAGCGCGCCCTAGAGGACGCCTTCAAGC
CATTGGGCATCGATGACTGGAACTCCGTCTTTTGGATAGCGCACCCCGGCGGGCCAGCAA
TCCTTGACATGGTGGAGGCCAAGGTAAACCTGAACAAGGAACGGATGCGCGCCACCAGGC
ATGTCCTCTCCGAATATGGCAACATGTCGAGCGCCTGCGTGCTCTTCATCATGGACGAAA
TGCGCAAACGCTCCGCTGAGGATGGCCACACCACGACTGGCGAGGGAATGGACTGGGGCG
TTCTCTTCGGCTTCGGCCCCGGCCTTACCGTGGAGACGGTCGTTCTCCATAGCGTCCCCA
TCACTGCCTAGGCCAGCGCATGATCGCTCGTCCTCCATTTATCTTGGTCATGGAAACATC
TACTACTGTTGCTGTCTACACACAAGTTTGCACTATATTCTACCGTATATGGTTTGTAAT
AGAAGGGAGTATTTCTCTATATGCATGATATTTAGAGATTCAGATAAATTATTGCAAGCA
CCAGAGTATAGCAAATGATATAAATATTCTTGAAACTTCAATGTAGTATCAGTTATCTAT
TCCCTTGCGTATTATGGAATTTCCAGGTATACCTCCTCTTGAAACTTAGTTACAACGTAG
TTATCTCTTGGCTTACGCATTCCAGAAACATTGTAAATGATATATCAAATGCTCAAGCAG
TTACAACTTAGTTATACATGGAATTTACAGCTATATTTAATTGTGAAGCATGTTTTGTCA
AATAAATATTATCTAGCCAAAACACAAAGGATTAAAGCACAATAATATATCAACAACAGA
GCAGGAAACATGTTTCTCAAAGCATTTAGAGCAGAGTTTTCACTGCACAACGAACACAAT
ACTCAAATTCACTGTCCACTACTGTGTATGGAAAACATCTAGCAACATAAATAATTGAAG
AACTTTACCAAAATAAATTAGATGCTCCTAACACTTGACTCAGTACAAGAGAACAGGGGA
ATGGAGATTCCATCAGTTTTACACAAGAATAATTATTTATAGCACGTGATGCAAGAAATC
AGGCACTATTTTTGTTATATAAACCAGGCATTACTAATGGTTGCGAAATAATATTCAAAT
CAAAATGCAGCAGCACATAAAGCAGATAAGCATGTTAATGGTAAGGACCATGCAGTTATC
ACCTTGGTGGCTCGTATTTGATTATGCAGAATACAAATAAAAGGTGTATAATTTGTACTC
TACTATTCAAGAAAAGAGGACTACAGAGAGAATAAAGAGAGAAGGAAGTAGTGGCACCTT
GATGTGGTAAATGGGTTAGCCTTTCAAGGAATGTGAAAAGCAAAGGTACTGGTCTTTTGT
TTATATTTTGCTGGTGCCGAATCGTATGTACTTTTCCATGGAATGTCTTATCCGTCATTT
TGGTATTTTCCTTAGGTAGGGATTTGTGGCAATATGTATAATATCACTCCCAAACAGATC
TAGTAGGACCTGACTTGCCCTCACTGCACTAGAGAATTAACATGCACTGGAGTGAGCAAT
AGCTGACCAGAGAAGAAGGCTTCAAGGTTGCCAATGGTGTGCAGACACAGGTCCGACCTG
GACTCCTCTGTCCGCACCGCCACGTGGGGCCAGAGAACCACATTATCCATGGAGAACAGC
TCTGCCGGCACCTTGGGCTCGGGATTTTTGTCCAAAAGGACCCCCTGTCGAGTGGGATTG
TCAAAAAAGACCACCTTTCAGTGCAAATGGTCAAAAAGACCCCC