| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_140438
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_7881 |
3 |
1198 bp |
MLOC_7881.1 |
Available |
Available |
LOC_Os04g32070.1, FRAME:+3, EVALUE:4e-104, 13104.m03068 protein dehydrogenase/reductase, putative, expressed |
| MLOC_7880 |
2 |
4389 bp |
None |
Available |
Available |
LOC_Os07g05430.1, FRAME:+3, EVALUE:8e-30, 13107.m00496 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_7881
CDS Structure of MLOC_7880
Contig Sequence (8172 bp)
>contig_140438 8172 assembly3_WGSMorex_rbca.fasta
CATGGGAGGAGTCCTTAAAGAGAGATCTGAAGGATTGGAGTATCACCAAAGAACTAGCCA
TCGACAGGGGTGAGTGGAAGCTTGCTATCCATGTGCCAGAACCATGAGTTGGTCGCGAGA
TCTGATGGGTCGCACCTCTAGCCTACCCCAACTTGTTNNNNNNNNNNNNNNNNNNNNNNN
TTGTTGTTGTTGTTGTTGTTGTGACCTTTAAGCGATGAACCACAAGTCTTAGTGCACCTA
AAGCCCCTTTGTGCGTCCAAGTCGGCCCTGAGGGGAGTGAAATGCCACCAGAGATACTTT
TTGGCAACACTTTGGTCTACAAGCCGAATTTTGTGAGGCTTATAGCCTTCAACTGTTCGA
GCTTGCTTTAGATAAGCCCTAAGTTATTTTGACAATTCCAGTCGATAAGCCCTTAGGCTA
AATAAGTCCCACAACTTTTAAATCAAGTTAGGCTAAGCATGTTCAGATTACTACATAGCA
ATTCAGCCTGCTAGTTGTGCTATATAATATCCGCGCACTTACCATTCATATTTGTAGCTG
GACTTCAGTTGATGTTTTGGATTTTTGATGTGTATATGTGGATTGCCTAGCCCTTCTCAT
CACTTCGGAATTTTGGTTGTGTTGGCTAGAGAATGAAGCTTAACATGGTATTGGAGCCTA
AGGTCTCGAGTTCAAGTCCTGGCTTCCGCAATTTATTCAAAAACTGCCGATGCCCCCTTT
TATGTCCACGTATGGGCCTCTTCCATTAGTTTGGTCTTTTGGATATGTTAGCTTAACAAG
AACATCTTGCTAGTGCTGCAGTTACTGCATAAGCCAATACTACTAATATCATTTGATCAA
TTTGTTGGAATAATTTTGTAAGCCATGGCCAGACCGGCTCGGGCGCGTGTGCATGTGCGC
TAGGGTGAGTCGGGTGCTACAGTGGCGGGGCATGTCGGGTGCGTGCGTGTATAGGTAGCT
GCGAGCACGGGGTGTGTTTGTGCGGTCGCGTAGCGTGTGCTTGGGAACAAGTCCAGGCGG
TTGGCAAGTCGCGCGCGATTTGAAGGGCCCGGCGTGGACCGAGCGCGTTGGAGCGTGTCG
TGGGCACGCGCGATGCGGGCGGATCGCGGGGCGCGAGAGAGTGGAGGCGTGGGTGCGTGC
CCTGGCGTCGGCTCGGGTATAAAGCCAGCGCGGCCATCGTTATAACTGCTGTGGGGTTTA
GTTCGAGCCCAAGAAAAAAAGCCGTTGTCGCTGCGGCGTTCGTGCACGGGGAAAACAACC
ACCATGTCCACCTTTGTCTTCCTCCTCTCCGGCGACCGCAGTGCGGCGGCGGGTCCGTTT
TGGCAACGACAATTGGTATCAAAGCCACGTATTGGAGGGTGATCGTCGGTGATGCTTGTC
CTGTACGCCGGCCGAGCGGGGGGTTCGTTGGCGATGCAGGTGTCGACGCTCACTGGTGAG
AACAACACCACGTGGGCTATCAAGGTAGAGGCAAACTTGGACAAGCCAGTGCGTGCCTAT
CTGCTCGGGGCTCTTTTGGAAGGCTTCTTGATGCAGGTATCCCCGGAGAAGACGACAGCG
GAGGTATGGGCTTGCCTGAAGACTAGGTTCGTCGGCGCGGCTGGCCACACTCTGCAGGGA
TTTCGATCGGCTGCGGATGGTGGACGGCGAGTCCCTGGCCGTTCGCCGGTAGGATCGGGA
GCATGGCGGCGCGGTATGCGGGGCTCGGTATGACGCTGGACGACGTTGCGATGGTCAAGA
AATTACTTGACACGGTGCCGGATCGCCTATACGCGGCGGTGGCGGGCATCGAGCAATTTT
GCAACGTCGACGTCATGCCGTTCGAGGAGGCGCTCGGAAGGCTCAAAGCCTTCGATGGGC
GCACACGGCGACGCTTGCGCGGGCGGCGAGCGAGCGGAGGAGCAGTTGATGCTCACAGCA
ACGCAGTGGCAGGTACCGCAACAACAGCGCGGCCGCGGCTTCAACCACGACGACGGTGGC
AGCAGCATGACGTCGAGCAGCGGAGGAATGCGACGCGGCCGGTGCTACAACTGCGGGGTG
CGCGGCCATTTCAGTCGGGACTGCACGAAGCCGAGGAAGGCGGAGGTAGCGGAGCAGGCC
CTCCTCGTCGACGGCAACGTCCAGGACGACGGGCTTCTTTAGGCTGTAGCTTAGGTGTGT
GTGTGTTGGAATAATTCTGTAAGCCACGGCCAGACCGGCTCGGGCGCGTGTGCGTGCGTG
CGCCAGGGCGAGTCGGCTGTGACCGTGGCGGGGCGCGTCGGGTGCGTGCGTGTGTAGGTA
GCTGTGAGCATGGGGTGTGTCCGCGTGTGCGTGGGAACAAGTCCAGGCGGTTGGCGAGTC
GTGTGGTGATCGCGCGCGATCCGCAGGGCCTTGCGTGGACCGAGCGGATCGCGGGGCGCG
AGAGAGTGGAGGCGTGGGTGCGTGTGGGTGCTTGTCCTGGCGCTGGCTCGGGTATAAAGC
CGGCGCGGCCATCGTTGTAACTGCTGTGGGGTTGAGTTCGAGCTCAAGAAAAAAAGCCGT
TGTCGTGGTGGCGTTCGTGCGCTGGGAAAACAACCACCTTTGTCTTCCTCCTCTCCGACG
GTGTCTCTGGCGACCGCAGTGCGGCGGCGGGTCCGTTTTTGCAATGACACAGTTGCCTCT
TCATATAGTACTGGTAGCAATTGCAGGTTTTCTTTGAAGCTATTCCTTTATATATTGTTG
GCAAACACTTCAAATAGTGTGCTACTACCTTGTATTCATAATTAGGGAAGAAGTATGTTC
AGACCCTTCAGTTACTGCATGAAGCTTAACAAGAACATCTTGCTAGTGCTGGAGTTGCTG
CATAAGCCAATACTACTGCTATCATTTGATCAGTTGCCTCTTCATATTGTACTGGTAACA
ATTGCAGGTTTTCTTTGACGCTATTCCTCTATATATTGTTGGCAAACACTTCAAATAGTG
TGCTACTACCTTGTATTCATAACTAGGGAAGAAGTATGTTCAGACCCTTTAGCGCATGGA
CCATTGGGATCACTTTGATTAAAACAAACTCATTTCATCTGATTTTAGTTCCTTGTTTTT
ATTTATAACATCTTAAATCTTGAAGGTGTGTATGTTAACCCCCGTCAATTGTAGGGTACA
ATGCTTATTGAGTACAACGGACAATCTTCTGGACCCATTGTGCGTGAGATGAACGAAGGT
TGTTCGACTGCTGATGCATGGCTCCTGCTTCAAAGGCTGAAAACATGTTCTGCTCAACAG
CACATCCGAAATCTGGACTTTATGGATACCACTCCGTGATTATGGTCAGCCTTTTTGCTC
GATTAATGCAAAAGCTACATTGTCGTGATCTTGCTATGCTAGGCTAAGTGCACTTGTGCA
CTTTTCCAGTTCTTCGTTTTACATCTTTGCTTCTGCTATAAAATGTGTTCATTATCTCTG
CCTCAGGCAGTTGCTCTTGCATTGTTTTTCATCTTCTATTCGTTGGGGGGGATTGGAACT
AAGTAAAAACAAAAACAGTTTGTTTCCGCAAAGATAATAAAATATGTCACATTATTGAAA
AGACAATTCAAGAATTAACCTGGTAGTTATGAAATTTTTCAGTAAGATTGTATACAAAAA
TCAAACTAACTGAAGCATCAGCATAAATTTTCAATCACCGTATGGAACGATGAAATCTTC
TGTTACCAAAGGAGAATTCTACACGCTCTGTAAACACCACTATTCTTCCAAATATATTTT
GTATTTGCCACTGAAAGGAATAATATTACTTTTACTATGCTATTATCGACGGCCAAAGTT
GTTAGACCTGGCATGACCATTTCCTTCTCAGGCTAAGCTATTTTCTGCTGCAGCACATCG
TTCTTTTTAAATGAATTGTTATTTTTTTCAACCGGGCATTGCTCCTTTTTATTAAATTGC
TTAAGGAAATACAACATGATGTCCATCCATACGACAAGAACCAAAGTTTTTGAAGGTATA
TCTAAGCGCGGGCAGTTGATGGCAAAGAGGTTTATGTAGAGTATTTTGGTATTTAAACTC
TGATGAAGTCAACAAGTTTGACCATTTATAATGACATAGCTTTGCCTTGCCGTATAAAAG
TGCACAATGTTGATGACGGATAAAATAGTACTCCCTCTGGAAAGAAATATAAGACCTTTT
AGATCACTTTACAAAGGGAGTATTTGACTAAGACACGTTAATTTCCTCTAGTAGACTAGG
TGAACATTCATACTAACTCCAGGAAAGTTATTTTGTGAGGTTTCATAATTGATGTTGTAA
CTTGTAATAATAGTGCGTACTTTCTCTGTACCTAAATAATTATAGTTGGGAAAAACTATT
TAGTTGAAGAAAACTTTTAGTTCTTTTCAACTACGATTGTTTAGGTACAGAGAGGTGCTG
GAAATTAGCACCGAGGTGTTCGCTTATGTTTTCCTGTTTTCTTGAGTTCCATTCAGAACA
ATGCCCCTTTGTGAAACTCTGTCCGCATACGTGCCCCCTGGTTATTTTTTCACTCTGTAA
ATGAAGGTTACAATGTTGTGGACCCCCCGTTTAATTTTCCACCCTGTAAATGAGGGCTAG
AATGTTTACACTTTCACTTAAATAGTACTCCCTCCGTCTGGAAATACTTGTCCTAGAAAT
AGATGTATCTAGACTTATTTTAGTTATAGATACATCTATTTTATACATTTTTAGGAAAGT
ATTTTTGGACGGAGGTAGTATACAAGTTACAACCTTTATCAGTTCAATTTTTTGTACTTC
CGGACGTATTTAGCACTGAAATTAGACTGTTCTCCCCAATACGGTACAGAGGGAGTACAA
GTTATAACGTTTGTCAGTTTACTGAACGCGCTTGCAATTAAGCCAATTAGGTCCGGGTTC
CTGTAACTTGTTTGTGTTCGATCGTCCTTTCCATGAGCTGCTCCCCTTCTCCTCCTCATA
TATAATATACGACGAGGAGCATCAAATTCCAAATCGATAGATTCAGAACTCACCACTCAG
AAGTGAAAGTTCAATGTACATTGCACCAAGTAGTGATTTCAGACCAAGAAAATAAAAATG
TACAGTAATGTTACAATTATTACGAACCATGAGACATACTACTCTCTCCGTTCTTAAATA
TAAGTCTTTTAAGATATTTCACTAGGTGACTATATACAAAATAAAATGAGTGAATATACA
CTCTAAAGTATGTCTACATACATTCGTATGTAGTCCTCTAGTAGAATCTTTAGAAAAACT
TATACTCCCTCCGTCTGGAAATACTTGTCATAGAAGTAGATGTATCTAGACTTATTTTAG
TTATAGATACATCCATTTTGTACATTTCTAGGACAAGTATTTCGGGACGGAGGAAGTATT
TGGAAACGGAGGGAGCAGTACACAAGCACGTTTTAGTTCGATATATAAAGCTTCATATTA
CTACAACCAGACAGCGGAGTGGGCTTCTTACATCACAACTTGCCACTCCAGCTATTTTCA
CTTTCACCTGGCCCTAATCTCCGGCGACCGCAGCGACGCTGTTTGGGTGAACCAGCGCAC
CCCGGGCATGTCGAGTATCTGTCTTCCCACGGTGTCGGTCGTTGCAGGGCGCCCCAGCGT
CTTCACCGTCAGGAGCCGCGAGCTCCAGGACAGGATCTCCGGGAAGCAGACCCTGAACAG
GTACACCGCCATGTACCACCTTGGCTCAAACACGTACCTCTCGCCCCGGCACACGTCCCT
CACCACCGTCTTTGCGAAAGCTGCGACAGGCTCAGCCGGTGTCGGCCCATGGATTGCCTG
CGATGATCACAATTAGCCATGTCAACAACATGAAATGACATGCTACCGCGGGCCAAACAA
AAAAACATTGCGTGGCAACTCGTGTTACATCTCTTTCATCTTGGTCAACTTTCATCTCGC
CTTCCTTGGTGAGCATCTTCCCCTTTGTGATCTCCGACTCAACCACCCCTGGGACGATCT
CCGTGATGTGGACGTCCCCGCCAAGCTCCATCCTAAGCGTGTCGTAGAAATTTAGCGCCG
CTGCTTTGCTCGCCTGCCATGCAAACAACAGTCATTTCGCATTAGCAAGATTTCCACATC
GTACCCGTGCATTTCAACTGTTTATGGTAGCAAGCGTGGAATGGACTCTCTGACCACAGA
CATTGTAGAAGGTGTTCCTTCCGATGAATATGTAGGAGGAGTTGGAGGTGACTCCGACGA
TCCGGCCATGGGTTTTCTTCAGGTGAGGAATGGCATAGCGAGTTGGGTACACATGGCCCC
AGAAGTTGATGTCCTATGTGCGCAGGAAAAGGTCAAATTCTCACGCATTGTCGCCCTAAA
TTCATGTGAAGAAACTGAAAACGGCATGTGCTGCGTACCATCACTGTTCTGAAGTAGTGC
ACGTCCTCCACCTCTTCGAACTTGCAGACCTGCCAAATCGACGCGTTGTTCACCAAGTGG
TCCACTGCAAATAGCAAGCGCATCAAAAGGAAGTCCTGGCGATCCGAATGCACACACGTC
AATCTTGATATATACAACAATAACAACAACAAAGCCTTTAGTCCCAAACAAGTTGGGTAG
GCTAGAGGTGAAACCCATAAGATCTATAGCACACTTCCACACACCCCTGTCCATGGATAG
CACACGTCAATCTTGATATGATCCACCAAAAATCCCAGTGATCATTAAGCACTTGCATGA
TCAAGTTAATCTACTGTTTCAGGAAATTTCATGCAATGAAATCAAATCCCATTCAGCTCA
GACTTGTACATCTTCCAAAGTAGGCAACCGTGTCGTCCATGAACTTTCGGCAGTCGTCGG
GCTTGGAGACGTCGGCCGGCAAGACAAGGACGTTCGGTGAGCCGAGCGCCGACGCGTTGT
CGGCGACCTCCCGGAGGCTCGCCTCCCTTCTCGCCACTAGCGCAAGGTTGGCTCCTCTCT
TCGCGTACTCATACGCCAGGTGCTGCACACGCAAACAAGAAACTAGCTAAAATCTACCGT
ACAGAAAAGGTGAAGCATCCTGGAGTGTATGCACGTAAATGTTACGTATGCATACCTCGC
CTATGCCGGAGGAGGCGCCGGTGATGAGGACGACCTTGCCGGAGACGTTGTCGGGGAAGA
CGGAGCCGAGGAAGGAGGCGGTGAGCTTGTAGACGTAGTAGGGCGGGAGGAAGAGCAGGA
GCAGCGCGGCGAGAGCCAGCTCCAGGGCTACGCCGGCCAGCCTGCCCATCAGCATCGTCA
TCGGCGTCCTTGCCGACAGGACCTGGTTGCAGTGTGTGGACCTGGGCATGCACAAGAGTT
GCATATATGCCGGCAGCTGGCAGGATCCTTCTTGCGGTGCGGCGCAGGAGACGCGTGGAG
AGGCGAGAGGGCATGCAGATCGCCATCTCAGCTGCTACGTGCCACCGCGGGGGCCACGTG
GCAACCACGTTTCGTGCTGATGTCATTTTGGTTGTCACGGCGTCCGCATACACAGAGCAA
TTAACGTGAGCACCGTCGATTGGAAAAAGAAGCCCGTTGCACGCTCTGCTTCAGTTTCGA
ATGCACGCCCATCCATTTGCGGCACCGAAACACACAAATCTTCTTTCTCAACCCGGAGCA
CGACAACCCCCTTTAAAGAACATAGTTTCTGTTTTTATTGTTTATCTAGCCAAACTGAGA
ATTGATCTATATATTTTTGCTTCATCCTATATCTCAGCCATTTGAGCTCCTCAAAATATA
TGAATTTCCAACCCTGGAATGGAGGTGTTATGTTCTCAAAGATCTTATTATTCCTTGTGA
TCCAAATAGCCGAGGACCCCAGAATGATAATCTTCATGAAGAATGAATATGTTAGTTTGT
CTTTTAAATCCTGAAAAGCCTCTAACAGTGAAGGATTAGGTGTTTAGGAGGGACAGATGA
AATTACACAACTAGGCAGCAGAAGGACATCCCTAAAAGAGATGATGCAAAGTTTTTCTTG
TAGACTCGTGTTGGGCCTCCAAACGTAAAGTTTTGTAGGACAATAGCAAGTTTCTTTCAA
GTGGATGACCTAAGGTTTATCAATCCCTGAAAGGCATAGGATGAAGATGGTCTTTCTCAA
GCAACCTGTAATCAAATAGTAAAGAGTCTCTTGTGTCCCCAACACNNNNAATACAATGAT
AAATTGTATAGATGCACTAGTTCNNNGAAGAGATGGTGTTACAAGTGTAATATGGATTGT
AGATATAGGTTT
