morexGenes - Barley RNA-seq Database

Contig contig_140403
Source Contig contig_140403
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_140403 (6901 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_140403

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7872	1	396 bp	MLOC_7872.1	Available	Available	None
MLOC_7871	4	1309 bp	AK361743	Available	Available	None
CDS Structure of MLOC_7872

CDS Structure of MLOC_7871

Contig Sequence (6901 bp)

>contig_140403 6901 assembly3_WGSMorex_rbca.fasta
TTTTTTTTTTTTTTTTTCATTTTGTCCGGATCCGCGTCTACGTACTTCAAAGCGGACAGT
CAAATTGGAGCATTGCTTCATGTACGACAGAAAATACTCCTTCCGTTTTTAAATACAGAA
TAAAATAAATAAATATATATTTATATACATTCGTATGTAGTTTTTTAATAAATTTTTTAG
AAAAACTTGTATTTAAAAACCAAGGGAGTATATGATTTCTATATGGAGGAGTACGGTCAC
CGTTGATCAACGGTTATTCAGGATGGGTTCACGATGGATTGCACCATCATACGAAAATCA
GACCTGCTTTTATCGTACGTGAGGCTATTCCGTTCAAATCGCCTTCAAACATTCTCAGGC
AACTGCAACGCACGACCCTAAAATCGTCCGCCCAACGTATGATTTAGAGGTAAACCAATC
CAATCCATGGACCAACACGTGGGGAACAAACTGACAAATATTTGTTTTTGATCCGCTTTT
GATTCATTTTTGGTCCAGGTTTATGTCACATTTGCGATCAGACGGATACACGTGGACGTG
CGCGACACGTGTCCTTGTCCTCTCTGCGTCCGCCTATCGGGGACACACCCGTCCCTTTTT
CTATCCCCCAACTCGGGCCGCACACCCCGTCCCACTCTCATCTCGTCCCTCATCGCCTCC
AACGCCATTTATCTTGGCCGTGTAGCTGACGAGCACGGCCGTGTGCTCGGCCACGCTTTC
TCCTCATCACGAGTTGTCCAACCCCCCGCCCTCCTCAGCACACGTGACATCCGGATTTGG
AGCAGATCTCGCGAAATTTGAGCGCGGCAGGCCACTAGAGGCCGCGTCGTGCCATGGACT
GGCCGGGTACCGGCCTGCACAGCTCCGTCTACGCCCCCAGGCCGCATGCAGGTACCTAGT
CCACTTCTAGCCGCTCGGATCTACCCCGCCACCGTTTCGGCGACAAATACACTAACGACC
AGTGTCCGGGATCGGTGCCGGTCCAAATGCTCGTTGTCGCACTGATGTCGCTCATAAAGT
GTGATGACTGTTGAGGTCTTGCGCCGCGTGTCTAACACACCGAAACATCCCAGATGGGTG
TTTATCAAGTGTCAAAAATGATGGGGTATATGGTAGTTTAGCTTCGGTTGTGCTTCCAGA
TTGGGTTCGTTTTCTTACAACCACATAGTTATTGTGTAGGTTGGATGCAAATTTTGGTTT
TGGAAAGAAGAATGCATCGGTCTACTGGGAGCACACAATTTAATAGAAGTCCGTGCACTT
CTTGCTACAATAGAGGCTAGAGATAAGACTAGGATGTGCTGAAGGAACGTCTAATTCTTT
AGACTCAAAGAAGAAAGAAGCATTCAAGATCAAGACTCTGTAGACCAACAACGAATGCAT
CAGGAAGACACTAATTCAACTTAGGGGAGCAGTTGCAAAAGTTGAATATCTTTTAAAATG
TCTTCTTGTGGTTCTTGTTATTCTAGCCAAAATTTTGTGAATGTTTTCAATGTATCAAAA
AATTATTGATTAAAATAATAAAAATGAGAAAAAAAATATATATGCAGACGAGATAGGACC
GAAGACGCGGACGCGTGTTGGGCGCCTGGCCGGTGCAAACACAAAACCGGACGGACATGA
CCCAATTTCCACCCTCAAACGGACAAAATCCAGACAAAAACGGATATCCATTTAGGATTG
TGCGTTGGAGTTGCCTAACCATGCTGTCCACATGTAATTTGGTATCCAAAGCTATCTCGT
ATCGGTCCGTGGACCAGTCAATTCTCTGCGTCAACAAGCTGGTGAACCACATCCTATCGC
TGTAGAAGTCTGTCAGACTCCGTAGGTAGGTTGTAGTTTGTACGACTGTACGTGTGCCAC
GAGAGCGCACGAGTGTTTTGTTTGTCGCAAACCAATCTATGGGCCTGTTGGGATCATGGG
TTAGACCCACGTTAAGGTAGTTGAGGCTCAACTAGCCCTAGAGAGGTGCTAATTGAAACT
AGTTGTGATGGAGCCTATAAAAAAATCTTTTTTCCCAGGTCAGCCGCACCGAATCCCCTA
TCCACTCGGCCCTCCTCCCAGTGCTTCCGTTCTCATTCGTCCCGTTGCCCTGTTCACCCG
CCCCCGCCGGCCCCTTCCGCCCGTCCCGTCCGCATCCATCCCGTCGCCCATCCGCCTCCA
TCCGCATCCATCTCGTCGCCCATCCGCCTCCATCCCGGAAGTGGGTTTTAAACTCCGAAA
AAGTTTTGGACATTTTCGGCAGTGTACCGGGAGTGACGAATGACCTCCGGGGGTCCATCA
GGTGGGCCCACTTACTCCAAAGGGTCTCATGTGTTGTGGGAGGACGTGAACCAGCCCCTA
GTGGGTTGTCCGAAGTCCCCACTAAAGCCCAATGGACGTGATCCAACTCGATGACGATCT
CGCCTCCAGAGAGGGGGATTTTTCATCGTTGTCATCACCAACCTCTTCTTCTTCATCATC
ATGATCTCTCTACTAATATGTGAGTTGAATGAGACCCCTACTTGGCGTGCATGGGAATTG
AATGAGACCCCCTTATGTAGTAGATACCGAATTTGATCGGATTTGATACCTAGTACTCTA
TATGCGCCGCAGTTGACGTTGTTATGTCATTTTTGTGTTTAGTGCCTGACACTGGGATCC
GATTGTCATAATTTCAGATTTAAACTCGTTATGTTTTCATGAATATATACATATGTTTTG
ATCATATTTGCAAGTTGTATTCACTTGTTACAGTTTTGAACAGGATACCACTAAGTGAAA
ATAATCAAAGTATCAAGGATGACGGCTAGGATTTGAGGATTACATCTACTCATAGATTTC
TTAATACTCCCTCTGTTTCTAAATCTAAGGTGTATTAGTTTTTGAAAAAGTCAAACCTTG
TCTATATTTGACAATTTTTATACCAAAATATATAATGATTTGCAATATTAGATATATATA
TAATATAAAAATATATTTCATGATNNNNNNAGTGATAATGATTTGGTATTCTAGATCTTG
ATATTTTTGTCTATAAACTTGATCGAAGTTAGTGAAGTTTTTATTTTATTTTAAATAATA
CACCTTACATTTAGAAACAAAGGGAGTAATGCTTTGCTTCAGTGTTTTCTAAAGAAGTAT
CTGAGTTAACCTTAATTTTTGTTAGGAATCCAACTAAATTTGAAGTGTAGAACGAAAGAT
GTTGTGTAACTTCTTGTAGCAAGCACGTCCAAGTTCAACTACATTCCGAATATATGTCTA
CATATTATTGATGAATTAAAGTTTTACAACTATTACATAACTAGAGAAGCTACAACCAGA
CCCCTCAAACCTGTCACAAACGTCCGGTCAAGCCGCACGGTCACTGATCGGTCACAAAAA
TTTAACCCAGACGGACCTCTCAAAGCGGCCTCAAACGCGCGGGCTGACCGACACCCTCCA
TTTCCAGCCCAAATATGGGGCGGATATGAGGGAGCCCGGACGCGTCGGGCACGCCTCCCT
CGTCGGACCCGACATCATGACCTTACCTTAAATTGCACCAAATTCCCCGAACCCTTCCTC
CTCATCCCGTGCCCGATCCCTCGCCGCCCAGCACCCTTGCTCTCCATCCTCATCACATGT
CCCGATCCGCCGTCGTGATTTATCCCACCCTGTCCCGGACCGCCCCGATGGAGACGCACT
CCGCCTCGTCCATCGACGACCTTTCCTCGCTCTGTCTTGCAAGCCGGAGAATATTGTCCG
TAAGATGCGCCGTCGCCGGCAGCGACACAGGCAGGCGGAGTGGCGGCGCAGGTACATGCG
GGCATCGTTGACGAGATGTTTTCCCCGACGCACCAGGATCCCAGCACCCCATCCGTGCAA
GCTCGAGGAGAGGTTGCAACTCTCACGTGACGCGGAGGATGCAAAAATCATGCTCACGGA
TGAATCCATCTTGGATGAACATGCAAAAAATGGCTTGTGGAGAAGAAGAAGGAGGTCAAC
GACCGTACATCGTTGGAGGCGGTGAGGGCGGCTACGACTGCGGCAGCGGAGCAGGCGGCC
ATGATGCAGGTGGAAGACGCAGCCCGGATGTGGACGGCGATCGTTGCGAGGATGCAGGCG
GATGAGGCAGTCCGGATGCACGCAGAGATGAATGTCCACGTGGAGTAGGACGCATGAATG
AGCTCGTCCGGTTATTAATTTTATTTTGACATTGTCCGTTTATTTGAACTATGATATCAT
TTACTTTTGTTTAAAATTCAAACAATTTATATCATACATGTATAACTTCATATGAAATAC
ACGGAAAAAAATGAAGGCTTGCCTGAATGCGTCCGCCACGTGCGTGGGCGTATAGGTGAC
GTATAGGGAACCGGATGCTCTTAATTCTATCCGTGCAACGCCCATTAATCAGTAGCAGAC
GAACAGTTTCCATATTTCTGTTCTTGAAAACTACTCCCTCTATAAATTAATACAAAAACG
TTTAGATCATTAGTTTAACGATCTAAATGCTTTTATATTAAAAAAACGTTTATAATCATT
CGAATTATCTTTCTTTCTCGTAAGTCTCCTTCTCCGTGCGCCACGTGTGTGTCAGACTGC
CCACCGCTTCACCCAAACCTTATCTTATCTCTAACGAAGCTCCTCCTCCACTCGTTTCTT
CTGCTTCCTTCCTCTTACATCTCATCGAGAAGAGATTAGCCATGCAGTACTCGACCGACG
GCGGCGGAGCTGCAAGCAGCTCTCGACGCCGATGACGGAGCTACAATGGAGCGCTCGCCG
CCGCCGACGGAGCTGCAATGGAGCACTCGCCGCCGGCGACGGAGCTGCAATTGAGCGCTC
CAAGCCGCTGTCGGAGCTGCAATGAGCGCTTGGAGCCGACGATAGATCTACAATGGAGCG
CTCCAAGCTGTTGTCGGAGCTGCAATGAGCACTCGGCGTCGACGACAGATCTGCAATGGA
GCGCTCCAAGCCGTTGTCGGAGCTGCAACGAGCGCTCGACGTCGATGACAAATTTGCAAT
GGAGTGCTCAACACTTGCGGTGGAGTTGCAAATGGATATGCAAGTCGCCGGCTATGAGAT
GCAATGGATCGCTTGACGCATGCGGCCGAGCTGTAATGGAGCCGCAAGTCGCCGGGTATG
GAGATGCAATGGAGCGCTTGACGCATGCGGTCGAGCTGCAATGGAGCTGCAAGTCGTCGG
CTACGAAGCTGCAATGGAGCTTCATCGGAATTGCTCGAGTACCGCATCAGCACATGAGGT
GACGAAGCTGCAAACGATGCTGCATTGGAGCTCCACTGGAGTTGTAATGGAGCTTCGCCG
GACGCATCGGTGCTGCGTTGAGCTCCGTCGGACGGCCATCGGCGTACCATGAGAGTTGCA
GTGGAGCTTGTGTCGGGATTGGATCGTTGCGGCTGGAGGTGTTGTGCGCTTGTTGTTACC
ATGACATTGCCTAGGATCCAACGGCCATTCCAATGCTAATCCAATGGCTGTTAGAGAAAT
CATCCGGCGGATTTATAGCAGCCGCCTTTATATTAACTAGTTAAATGCCCGTGTCTTGCC
ACGACATACGAAATATTATATGAGAAGATTACTTGGTAAAATAATTCACTCACGGATGGT
AAAATATTTTCTGCGGGAAGCTACATCTTTTGTTTTTTTAGGTTCTGGGCATACCAGTAA
GTCATTGATGTTGCCTGGATTGCACTTAAATATCATTCATGTCTTGCAAAATCCAGATTC
TAGTATGTTATTTCTGATTCTATTTATTTTACAATGTATAGTAACTTCCTCTTGCTGACA
AAACCTGATGCAAGAGTAAAGTTGATTCCGGCACAAGACATCACTTATGTACGACATGGA
AAGCCTTTTGGTAGAACAGTTGGCTCAGCAAAGCTGCAGAAAAGACACTCCAGACGAAGT
GTCACTCCTCCTCCGAGTTCGCGTAAAGTTTCTCTTGCGAGGTCAACACCACTTACTCAC
AAGTCTACGCCACCGTTTACCTCCAAGGCCATGCCACCGCTTAATCACAAGGCTTCAGCG
CCTTTTACTCATAAGGCCACAGCATCTCTTAATCACACGGCCATGGCACCTCTTACTCAC
AAGGCCGCGGCTCCTCCTACTCACAAGCCCACGACGCCGCCCCTTTCTGGTTCATCGTGT
CTTTCTCCTAAGAGAGTTGAGACAGCTCACAAGGCCACAGGACTTCTTAGTCCCAAGCAT
GCTACACCACCCTTGCCTGTTGCATCGTGTCTTTCTCCCAAGAGAGTTGAGACAGCTCAC
AAGGCCATGGGGCCTCTTAGTCCCAAGCCCACTACACCACCCTTGCCTGTTGCATCGTGT
CTTTCTCCTAAGAGAGTTGAGACAGCTCACAAGGCCACGGGACCTCTTAGTCCCAAGCCC
ACTACACCACCCTTGCCTGTTGCATCGTGTCTTTCTCCTAAGAGAGTTGAGACAGCTCAC
AAGGCCATGGGACCTCTTAGCCCCAAGCCCACCACACCTCCCCTGCCGGTTGCATCGTGT
CTTTCTCCTAAGAGAGTTGAGACAGCTGAAAACAGGCAACCATTTTCTCTCAATCGGCCA
TCACCACTCTACAAGGCTGTCCAGAGAGGTGCATTTCCTCCATCTGTTTCACGGAAAGAG
TCAGAGATGAATCCCATCAATCCTAGTTCTGTGCATGTTCCTCCTGCATATTCAAGGAAA
GTCCCTCTTCATAGAAAGGCAGAACCTTCTTCTAAGAGTGTCAGCACACTTGACAACAAA
AAGTTATGCTCTACAAGCAATCAGGCTGCACTTAGATGTCAACCTACAAAAAGAGATGCA
GATCCTATTGTGGAAAAAGAAAATACTGTGAAGCTTCCATTAATGAGCCCAACATCTGTG
CTTAGTTCAAGTTCCACCGAGGTATGTCCAGATACTGGATCAAGGTCTGCATCCAGACTA
A