Contig Data
morexGenes
Links



Map Locations of contig_140235 (4109 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_140235

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_7813 1 476 bp MLOC_7813.1 Available Available LOC_Os03g60400.1, FRAME:-2, EVALUE:2e-23, 13103.m06626 protein 40S ribosomal protein S23, putative, expressed





CDS Structure of MLOC_7813






Contig Sequence (4109 bp)

>contig_140235 4109 assembly3_WGSMorex_rbca.fasta
ATTGTGAAGTGTCGTGTAGTCGACGTTCACACGACACCACTAGAGGAAGAACAACATACA
TGTCATCAAAATATTGAACAAATACCAACTTCACATGATAATTCATAACAAGACTTCTCA
CATGTCCTTAGGAACAAAGAGAACTACTCACAAATGATATCCATGTTAATGATCAGAGGA
GATAAATATATGATTAACAAACTAAACATATGATCTTCCATAATGTAAACCAACTAGCAT
TAACTATAAGATGTAATAAACACCACTAGCAATTCACACATACCAATCTGAGGTTTTGGA
ACAAAGATTGAATACAATAGAAGAACTAGGGTTTGGCGATGAGATGGTGCTGGTGCAGAT
ATTGATGTATATGAGTTCTCCCACAATGAGAGGAGTGTTGCTCATGACAAAGGCTTCGAT
TTCCCCCTCTTAGAGGGAAGTTTCCCCGATGGAACCGCTCCGCCGGAGAGCAAAAGTGCT
CCTACCGATTTTTCGCCTAGAGATGGCGGCGCTTCGTCTCGAAAGTCATTATTTTGTTTC
CTACGACAAATAGCTTCATATAGTAGAAGATGGGCACCAGAGGGCCTCCATGGGTTCCAC
AAGGCGTTGTGCATGCCCTCGAGGGTAGGGCACGCCCCCTGCCTTGTGGAACCATGCTCG
GTCTTCTCTAGCAATTCTTTATTCTAGTATTTTTAATATATTCCAAAATAAATCTCCAGG
AAATTTCAGGTTATTTGGAGTTTCGAAGAATGGCTATCTCTGTTGTATCAAGAACTCCAG
TTGCCGACAATTCCCCTCTTCAAGTATATCTTGTAAACTAATAGAGAAAAGGCATAAGAA
TTGCATCATCAAGTGAAACATTGATTACAAAAAATTATAAATAACATTAGGAAAACATGA
TGCAAAATGGATGTATTAATTATCCATGAATGTTAAGCACATGATCATCTGAATGACAGA
ATTTGAGATTGAGGATTAGTTAAAAACTCAAGCACCTTCACTCATACATTATGGTACACC
ATGTTGTCTATAACCAGAATATATAGGAGAAATTCATTATGGACAAGTCTTATTCTTCTA
CAAATATCATAGTTGTTCAATCTCTAGACGCGGGGAAAGATCAGTTAAAACCATGAGCTG
ATGGAAATGCGATATTGGGACACAAAGTTTCATATCCTAGTGCCACTAGACCCACTAAAC
ACAATTGATTTGGACTCAAGAATATCTTTTGATATCTCCAAGGCATAAAAAATCTTGTAC
TAGTTTTCAGTTTCAGAGAAGTCCGGACACCAATATCGTTTGATATATCGGTCAGATCCC
TACTATGTTAGATCATAGACAAGGTTTGTGTTCCCGCTAGGTGTGGTAGCCATCCCATGT
AATTCTCCAAAGCAGACCTCGTGGCTACATCCACCAACCATTATCTCAAAGATAATGTTG
CTTGTGTTGTACGGATGCAAACAGGTTACATAGTAAGCAATATCACCATATTGCTCATCT
TGCAAGTCAAATCATGTGACAACCTTGTTGATTTGTTTATGAAGCCTCTACCAACTTCAA
CATTCCGGAAACATGTTCATGGAATTGGTATTAGACAACTTCAAGATATGCAATTATCAG
GGGGAGTGTCTTCCTGAATTACCCATGTTCAAAGGAGCATATAATACTCTTTTTCCCTTT
ATGAGTCTACTTCTATAGGTTCGCATCAAGGTTTTTTATGAGGTAATATCAACATGAGAT
CATATGTCATACTTTATGTTTTCCCCCACAGTTTTTTAGGAAAGCATACACAACATATTT
ATTCTCCTTTAAACTCTATGGATTTTCTCATATTGAGTTAAAAGAGACAATTATTATGAT
ATGTCATATGAGTTTCTCCTTATATTTTTCCAACTAGGTTTTCAAGGAGTGTTCAATGGC
ATATCATATTGCACTATTTTCCCTTACGAGCTTTCTCTTGAAGTTTTTCATAAGTGAGAA
GTTTCTCATAATAGGTTTGAACGAGGCGACATATGTAATACTTCCTATTTTCCCCCACTG
TGTTTTTAAAAGGAAAGTATAGAAAGCATATTTATTGTTCTCCAAACTCACCAATGAGTT
TTCTCCTTCCTCATGAGGGTTTTCACATATGAGTTACCAAGGAGACAATAATCATTATAT
GTTGCACCTTTTCTCCTTCTTATTTTTCCCATTGGGTTTAAAGGAGTTTTTGGAACATAT
TTGAACTATTCTCCCCATATTTTCCCACGAGGTTTTTGAGGAAACTTTCATCATTATATG
GAAGATGTTTCAAGATGGAAGATCTAAATACAAGAAGCTTTCAATCTAAGGAGCGGTGTT
GTACAAGGAGAGCGTTAGGAATTAGTTAATGGATTAATTAGCACATGTCTATTGTTAATT
AGCATATGATAATTAACAAACAGTCATTAGTAAATGGTGTGTTCAATCCCGAATAATCAT
GTTCTTTCTCTCTCTCTCAATTTTCAACGGGCACCTGTTCTAGAGGGATGCCTCCGAATA
GACGTCTCTTTTTTTCACCCCTTCGAGATGTATATATACTTGAGAATAAATAAAAAATTA
AGACTAATCGTGCATTCCCTTTGAATCTCATTTTACTCTAACACGATTAAGCGAACTCAT
GAAAATGCGATTGAGCGAACACGGAAATCGGTCGTCAAACGATTTGTCTACTTCTTGGGC
AGGCCCACGACGAGGCGTGTGGGCGCCAAGAGGTTGAACCGGCGCTTAAAGCGTCCTATA
TGAGCTCCCCCGTGCTCTGGTCGTCCTCAAATTCCCCAATTCTCTCTCAACTATCCACCG
TTACCTCTCAAGCATACCTAGCCAAACGGGTCGTCTCAATCGGGCCGGCCCGATAGCACG
CCGGCCTGGCACGAGACGGGCCCATGCCAGGCACGCGACACACCTCGGGTCGTGCCTGGG
CCTGGAGGCTGGGCACGCGGGCCGGCACAGCACGGCCCGTGTAATTTTTGAGCCCATGGG
GAACCCAATAGGCCTAAAAATGAGCCCGTTTAATATATACACACACACACACACATACAC
ACACACAAAACCTAATGGGCCTAAAAATGAGTCCATGAGGCTAAAAATATAAAGCCCAGC
ATGCTAATCAGGCCAGCATACCGGCCCGTTTAATAACTGGGTCTGGAGGCGCAGCCCACA
GGCTGGCACGACACGGCCTGATTAGTAAACGTGCCGGCGCGGACCGTGCCGTGTCGGACC
GGCCCGTTTGGCCAGGTATGCTCTCAAGGTCCTCACACCCGGGCTCCTACTCTGGTTTAC
CTTTGATTTTGGGCTTTTGGAGTGGCATCGAATTGTTTCTTTAGCAGGGCGTTGGGGCGA
CGTGGAACAGCTCGCGTTGGACGGCAATGGCAACTGTGGAGGGCGAAGGGGGTCCGGGCA
CCATTTGGTACGTGGAGTGACCCAGTCCCCCGGATCCGACGCTGAATCTGCTGAATTTTG
CCTTCCGACCATTGCTTCTTATCAGTTTAGACCCGTCTCCATTGAGGTATCTTAACATGG
CAAGGGGCATCTTGACAAACTCGCAAGGCAGACGAAGGTGTTCAGGGGCTTGTTTATGAA
ATATTTATCTTGAGATGCCTTGGTGCGTTTTGGGTGCGAGAGCGACCCTGACTAGTGTGT
TAAAAAAAAGCAGCTCATGAGTAAAGGCTAAAAAGGATACCAGGGGCGCGCACACACACA
AAAACGGAGGGCAGAGGTTTAGTGTAGAAACTGAAACTTGGCAGCTTAGAATTCAGATGT
TTCTTCGACAAGAACTAAGATCCACAGGCTAAAAAACATTGCGAGTAACCAGCGGGATGC
AAAGTTTTCATGGCTGTCGTGACGATCTTGGAAGAATGGAGAGGGGCCATTTTAAGATCT
GGGCTTCTCCTTCTTTTCCTTGAAGAGGGCGAGGAGGGACACGCCCGACACCTTCACCAC
CTTGAACCGGACACCGGGGATGTCTCCCACGGCATGCCCCTTCCGACCGAACCCGGCGAT
GAGCACCTCGTCCTACACATTCATCACGGGCAGTGTTAGCAAGCAGAGAGAGGGGGCTGA
CAAATACTAGTTGACAGTGAAGTTCCGGA