Map Locations of contig_140193 (6350 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_140193

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_7800 5 1904 bp AK358997 Available Available None





CDS Structure of MLOC_7800






Contig Sequence (6350 bp)

>contig_140193 6350 assembly3_WGSMorex_rbca.fasta
CCCCGAGCAAGTGCAGCCGCCCGTGCTCCCGCCGAGACCACAGGCCCGCGCCAGCCACCA
TTAGACGAGAGGAGGAAAAGGTGGCCCTGCCGCCGCTAAGCCACGCAGGCTTTGCCCGAC
GACCGCGACCGGTGACGACGAGGGGAGGACGGGGAGGTGGGTGGGCTGCTGGCGACGACG
GCTATGTCGCTCCCAAGCCACCCGCAGGGACGACGCGAGAGCCTTACCGCGTAGTTTTAT
CGATCACACGTAGAAGACGTGGGTACCACTCGAGGTTATGGTGCCACCGGCAACGGGTCT
CGTGCCCCCACCGCCACCGCGACGACACCAAAGGGCGGAGGAAAGAGAGAGTAGCCCAAT
CTTTGCAACAAGGCTAATGAGGCAATCTTCTCCCAACCATATACTATTCTTTTCTTTGAA
ACAAGACCCATGTTGCACAAGTGCACTGCAACCAGCGTTTAAAAGAAATCCTCTTATGGC
CTGAATTTTGAGCCATAATAAATTGACTAATAAAAAATTAGGTCATCTGCAAGTCACGTG
GCATAAATTTTGAAATTCTCATTCAAATATTCAAATAAGAAGGTAACAGCACTAGATATA
GCATGAGACATATTTCTACATATAGCAGTATGAATCACAACCAGAGGCATTGCAACAGAC
ACAGTACAGCGACAAAATTGTACGACTAAATGAAGTCAAATTCTTGAATTCACCATGAAT
ATCACATTTTGAAACTACAAAACAAAGTCCTGGCTGGCGGGGCGGGGCAGGGCAGCATCT
CCTTATTCTGTAAATTCCAAGAGGAAGAAGAAAAACATTCTAATCTAAACCCCAGATGGA
GTTGCACTGAAGAAGCCCTTATTCATTCATTCTCTTTCTTCTTTGCGCCGCAACTCGCAT
ATCTACACCTCGCCACCTCCCATCCCATCACTATGTACACAAACAAATCATGCCTCAAAT
CTAACAAAACTGCCCCTCCCGCAATCTCGGAACAAATCAGACAACCTGTACAAATGCCTT
GTTCAAAAGCTAGGTAGCTATCTTGACCAGGGGCCTCCTCCACCAAACTGCCTGAAGCAA
GCAGAGGAGGAAGAAGGATGTGCCCATTGCAGATTGCCATCTACCTGGCTGCTTGCCACA
TTATTCTGGTGGGCATAACCATACATACCTGGGACTGGGGCTGGGGCTGGGGCTGGGGCT
ATGCCCTGAGCACCATGAGGAGGAACTAGATTCCTCCTTCCTCCAAGGGGCTGATGGTCC
GAGCCCAACGGGCGTGAAGATACCTGCTTGTACTGGGACAGGACACTCTGAAGGCTCCCG
TCCCCAGCAGGCAGATCCTGGCCTAAAACGACGCCGTTTGATCCCATTCCAGACCAATTA
TTATGTGGTGGGTGCTCCTCACCAGGGAACCAGCTGCGACTTCGATCCGCAGGCACGTGA
CCAGCAAAACTTTGCTGCTCCACCATAGGAAAGCTGTTCTGAGTACAGAGCGTTGCACTG
GAATACATGTTAATATTGTTCTCAACTTCCTGCGAGTAAAGTCCGGTGTGCCTCTCACCA
AGCAACTGCATCTGCTCCTGGGCCAGACCTGATTGAGCTAGGTGTTCGTTTGTCATGGAG
TGCAAGCCCATAGACTGTTTCATGCCATTCACGTGTCCCAGAGAATAAGAGGGGACCAAT
CCAACACCCTTCGCGCCATTTAGGAGCTGCTCACTGTTCAGCTGGTTGGTGCATGGTTGC
AACAGAGATGCCGAACTGCTCATTGGTTGTGCAGCAGGAAGACTGATTTGAGCTTGCTGT
CTGCGTCTGTCATCTACCTCCAAGTCAACCATACAAGTTGCTGGCCCACCAGAGAGATGA
TGTTGTTTAAGCTGCAGGGCACCTGATTGTGCATACAGACCATTCCCTGGAGGGTGGTAA
AAGGAATCCACAGGGGTTGCTGACTGCCATAATTCTTTCTGGCATTTTGCAGGCCCTTTT
AGTTCAGGACCTTTCACATTATTCTGTCGGCTCAAAGTACTATCAGAGGACATCATTGTA
ATATTATCAGTCTCTCTTTGATTAAGAATCATGCCATTCATCTCTTTTTTATTGTCATGT
CCAGTTGAGGTACTCGGGTAGCACATGTTCTTCAAGTCGTCAGTTCGCTCACTAAAACCG
CCATGAACATGAATAGGAAAACCTATATAGCCAGTCTTCTTGCAATCTTGAACTAGCATA
TTCTGGCTGTTGACACCTTGAATAGGTGAGGTTGTGCCGCTGATGGCCTTGGGCTCCTGA
GATTGCATATCTGGAATGTGATGCTCTTGAAGAGTTGTATCATTGCAGCTGGTGTCTTCC
ATATCATCATCTGCCATGCCTGGATTGCTCTGGGAGATTCCGTTCCTGCAGCTTATATCC
ACAGGGGCTTCATCTTGCGCTTCTGAGCTGTCGCCACTTTTAGCACTTGTGCTGCTGATC
TTTTCAACTTCTTCATCTTGTTCGTCTGAGGTACCCTGACTCTGGGTAGGTATATTCGTG
TTATTCATGTCCATAGCATCTTGATCTGTCATGTTTGGGCCGTCATGAGAGTCAGTGGAT
GTACCTGTATCACTTGTATCATTGCCATCTTGATCTGTCGTATTTGGGCTGTCATGAGAA
TCTGTGGATGTATCAGTAGTATCACTTGTATCATTGGCATCCTCTTCATCTTCAAGACCT
GCGCTGCTGTTATTCCCGGATTGCGGCACATCCTGAGGCGAGTGCTCTACCAGTTCTTCC
TGTCCATCTGAGGAGACAGCATTTCGATAAGCGCCATCTTGTCCAGCTTCTGCGGTTCTG
ACACCTAACTGCTCTGCCTTCTCATAAAAATAAAAAGAGTAGGCAGATTGTTAGAAACTA
ATCATGACTTTTAAATGGATACATAATAAATAAGAATGTTTTGCCTAAACAAGACATGAT
GTTTAGCCTTCTCATAATAAATAATAAATAAGGCATCATGTTTAGCCTTCTCATAATAAA
TACGTAATAAATAAGGCATCATGTTTAGCCTACCCCAACTTAAAGCCCACCTCTAGCCTA
CCCCAACTTGTTTGGGGCTAAAGGCTTTATTGTTGTTGTTTCTTGTTTGCATGTTTACTC
GGCGCCTAAACCGACTGTACTGCATAGTTACTAATCCATTGCAGAAATGTGTAGTAAGAA
ATCTGCTATACTCATGCACAACAGATGTATGGCCGTACCAAATACTATCAACATCATGTC
TTTTGAGCATGCATCGACCACCTAGTCCAGGATTTGTTAGAGATGCACGTGCATGCAGTT
TGACATCATGTGTGCTCACCCATGTAAGCAAAAAATCAAGTCTATTTTCATATAGAAGTA
AATTCCACATCATGTTCTTCATTAAAAGTTGAAGTGCTCAAAATGGTAAGGCATAACAAA
CCTTTTCAACTGCAGACATATTCCTCTCTGCAATTTCACGGCACAGTGACCTCCTTAATT
TCTCAGCAATCAACTTCTCTTCCCGGCGGGCCACGAAAGCAGCAGGGAGTTCTTTACATG
ACAGAATGACCCTAACATGGGTATAGTTTGACGTAAGAAAAGACCCATCAAAAGTAAAAT
CAAACAGAATTAAGATATTATTACTGACCAATGATCGTGCAGTTTCTGTTTCTCATCCTC
CATCAGTGTCTCGTATGGTTTCACATGAAAGTTATCAATATCACCAATAACGCCAACGAG
ATGTCTTGTCTGAATGCCATCACCAGATTGTTTCATTCTCTTAACAAGATCATGTTGAGC
CCTGCTGACCTGAAAAATAGGCACAGCAAAGTAAATCTGTGATTCCAGATCAGCATAACG
TCAGCAGTACATTAAAAACAATTGCTGGTAGATACATCCAACAATATGGCATCTTCGTAA
CGGGAACATGATATATATTACTATTGGCTGTGGCTGATGGATGCAACAATCAAAATTTAA
CATAATGTCCTCTAGGAAAAGATTTCACAAAACTGGATTATGTCATATCTAACAGTTACT
TGTTTTAGGGCCAGTTCGTTTTGTGACTTTTTTAAGCTTCTAGAATAAGCTGCCCCCTAC
CCAGATTATTCTAGAAGCCCAAAAAATTATTTATTTAGAAGCCCCAGGCTTCTAAAAAAA
TAAATTTGGTTGGGCTTCTGGAATAAGGGGTAGGAGGGGCAGCTTATTCTAGAAGCCAGC
AAAAGAACTGGTCCTGAGTCCTCAATGAATTCAATGCTACTCCAGCAAATTAAAGCTTGA
CACTGCATTAGAAACAGAAATGATATATGATTGGTTATATTATGTTAAGAAGAACTGCAA
TGGCTCGAACTTTATTTGCATTTTTACTCCAGCATAGCGGAAGGAAAAATGTATTCTAAG
CACCAAAAAGTTTACCTTAATATACGACATATACTTTGTGACGTCACCGTTTCGTACAAC
CTTCATGGGTATTGCATTTTTAGGAGCATTAGAAAATATGACATTATCTCCGGATGACTG
CCGGTCCCCTCGTCGCTGTTTAGCAAGGTTATCCCTACACGAGATGAGCAATAATAGGTT
TCAAGTCAGAATAATCCAAAACACATGAGCTTTTCCTTTTGTAAGAGCCAATGGGAAGCA
GTTGAACTATTAGTAGCAACTGCCGAAGTATCACCAGGGTATTCGAACTAGTAACAATAT
ATGAGATATACTCCATCTGTTAATTTGAAAAACGATATTATACTGGGGGTGGAGGGAGTA
TATTACACAAGATAACAAAAAAGGAAATGGCAATCCAATGATAACTCATAAAGGCTAGGT
GGCGAGCCAGAAGCTGAAGGACTAGAAAGGGGCTCGAAAAGTTAGATGCTTAAAAGGAAA
CTACTTAAAATCTCAGTGAATCATAAAACTATTCAAAGGTTGCCAAGAGCATCAAGTAGC
GTGTGTTCCACATGTAGGTCATTTTGGGGATGAAGGGGCCGATAAGATGTAGAAACAAAA
GCATTGAATAAATAAAATGTGAGGGAGGGAGAATAACCTGAACAAGGTTTTTGGATTGTC
ACAAGTTAACCATTTGTCCCTCCACCTGGTGACGGTTTCGGCCATGCTGCATAATTAGGG
TGTTGTTATTAGGGGAAGACAGAATTGCAGTGGGCAATTAATTGCAATATGAGCAGAATG
GAGTAGATTATTTGCGTTTGGACATACTCGGTATGGTAGTTGTTGAGCTGTGCATGGTAT
GCCTTCTTATGAGCTGTGATTTGCTGGTCCTTGTTAAGCACAGCGTCTGGATGAAGATCA
CCAGAGCAAAGAGCAGAGGACCTGGAGTGCAACAGAAATTGTGAAGTAGGTGAGCAGAGA
ATCGTGACACAGCAGACAGCAAATTTGTCTTAAGAGCAGGTGCAGAAGCAGAGGCATTTA
TTTGGTGGTAATGCAATTATGTTTTTGCATAAGAAAAAAGGCATTGTGCAAGCAAAATTC
CTAGTCCACGTTTGTTGAATGAATAAAATAAATAAAATAAGTTTGGTTTAAAAAATGTAG
CAGATGCACAAGGATTGCATCATAGCAGTCATGATGTGAAGTTTGAAAGTAAGAAAGCAA
AAAAAAAAAAGTGGTATGGGAGTACTTGCCAGGTTTGGAGAGGGTTCCCGAAGTGGTGAT
TTTCCCCTGAGAGCAAATCCTGGACCGCTTCCTCGGCGTCGGCGTCCGGAAGAAATCGAG
CAAGGAACTTCCTGTCGGCCTCCGTTAGGCAGGCGTCCCAGACCTAATAACGAAAAAAGC
AGCCACAATCAAGCATCCATATCCATAATTAATTTATAGTCTAAAAGTAGACTTGACAAG
GAGGGGGAGGGGGAGGTACCCACCTGGTAGGAGAGCAGGCCTCCGAGGAGAGGGATGTGG
GCGAGGGAGAAAATCCGCCTGGGGACGGGGGCGACGTCGGCGAGGGCTCGGGCTCGGGCG
CGTGGTCTCCTGGGCGGGGAGTCGAGGAAGGGGGCGAGGTGGCGCCAGGGGAGTCCGATC
TGGTCGTCGGCGGGGAGGGCCCGCTTGGAGCGTTCATCCCATCGGAGGTGGATGTGGGAG
CTGAGGGTGAGCAGCGGGGAGCGGGGCGGGTGGTCGGGCCTCGGACGCTTGCTCGATCTG
TGCTGCTGCTGGTGGTGGTGGTTGGGCGGGTGCGGGTGCGGGTTCGCGGGACGCTTCCTC
GGCTGGCCGGCGGACATCCCCTCTTCCTCCTCTTCCTCGGGGGCGGGGGCGGGGGCGGGG
GCGGCGGTCGATAGTCGGCGGCGGCGGCCGGGAGGCAGGGGGAAGGGAGGGGGCGGGTGG
AGAAGCAAGCAGGGTTGGAATCAATCAAGCTCAAACCCAAAGCCAAAGAC