morexGenes - Barley RNA-seq Database

Contig contig_140124
Source Contig contig_140124
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_140124 (6429 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_140124

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7784	1	1170 bp	None	Available	Available	None
MLOC_7783	4	3015 bp	AK363819	Available	Available	None
CDS Structure of MLOC_7784

CDS Structure of MLOC_7783

Contig Sequence (6429 bp)

>contig_140124 6429 assembly3_WGSMorex_rbca.fasta
CGTCGCGGCCTCCCCCACCCTCTACGCCATGGTGATTCCCCCCCCCCCTCTCCCCTCCCC
CCCCCCCCCCTCGCTTCCCCGCCGGTTCAGCTCGAATCCGCCTAATTCCCTGGTGTTTGC
GTGGGTTGGCCGGCCCCTAATGGATATTACTGCCTACCCGCGGACTGGCCACTCGATAGG
CTTGCGAGTTCGTCCAATTCCGGGAGGGAGGGTCGGGTAGGTAGGATGGTACCGTGGAAG
AGGATAGAGTGTGCCAGCAGAATAATCTCATATGTGGGAGGGATACCACTAGAAACATAT
CCCTGCCAGAGAGAGGGCCCTCGTGATGGTTGTTAAAACTGGAAATTTCCAATTCTGGTC
TGGTATGGGTTTTTGATACTCATGAGGATGGAGTACTACTTGTGATATGTGGGTGGTTGT
GTAGTGATGGAAAGACCTATATGTTCACCAACCTTTCGAGGTCTAGATTCTATTTGTGCT
TTAATAATATGGTGACAATTTCATCTTACATGTTCCTTGGAAGGTGGCAGCTGACCATAA
GGCCTGCGACTAGTGGAAAACAAAAACGCTGTTTAGAAATTTCCCTTTTATATGTTCTGC
GGAGGACTCGGCTTTCAGTAGAAAGCAAGGTGGCTGGCTTGTAGAAAATATAAATAGGAG
TACTTATTACCTAGCATTCAATTTAAAATATTACGCAGGGGAAATAGAAAATAAGATGTC
TGATTCATCACAAAGAGGGCTTTCGTTTAGTTTAATCCTTGTTACTGCATCAGTTGGTCA
TAACGTTTATGATCCATGTTATACTCTCTCTCTCTGAGGACTTTTGTTCCAAGCCTTTTT
TATGACATATTCAGTTATTTATAGTGGACAGACGGTATAACACATGTCCCTCACTCCAGT
CATAATTTTCTTTTACAGACTATTTCTGCCACTATGTTTTGCTACCTGGCTGCATGATTT
TCTTCCATCTTTTAGTACCTTTGTTGTTTTATCATTTGGGTTGCCACTTCCATTAGTCCC
ACTCTTTCTGTGGATGAAAACTTTTACTCTTATTGGAAAAGATCTTCTGGCTCATTGACT
TCACTTTGATCCTTAATTTTCAGGAAATTGATCCCAAGGTAGAAAATGATGATTTTGGCA
ATGAAGGAATGGAAGGATTTATTTCAGAATTGACAAATGCAATTCCAGGAGTCGATGAAG
CTATGAGTTTTGCTGAAATGCTGAAGTAATTATAGCCTCCAGTTTGGTGTTCACCTTTCT
TCCCTTTGCACGCAAAGTTTCTTTTTCAGCCTGCACCTCAATTTCCGGCAACTATCAGAG
TCTAACTTTTGTTTCTTGCTGCAGATTAGTTCAAACAATGGATTACTCCGTTGTAGTTTT
TGATACTGCTCCTACAGGGCATACTTTACGGTTGCTGCAGTTTCCAGCAACACTGGAGAA
GGGCCTAGAGAAAATGATGGACTTAAAGAATAGATTCGGTGGTCTGATAAATCAGGTATT
CTTTGTTCCTGATAAATTTCAACCTATTGTGTTAGTATGGTTGTTTTCGCTTACTATATT
ATGCACCAATTCATTCCACCATGGCAGTACATTGTATAACTAACAAAAAAAGCAGACGAA
ATCTATGGTTTCTGTTCATTAGAGCATGAATTACCAAGGTGCTGAGAACTTAGTGGCAGT
CTGAATAAAAGATGGCTGCTTAATTGTTTGATATGGTCTTACAAAGAAAAATATTGTGAC
GACTCCATGACATTGTATCCACTGTTTTTATTGAGGTTTAATGGTAATATGCTTTTGATA
TGTACTTCTACATTCATTAGAAACTTGTAATTGGACTAACTGAGTTGGACACAACAATTT
CTTACTGTCACAGGCCAGTCGACTTTTTGGTCTCGGTGATGATTTGAACGAGGATATGAT
GCTTGGGAGAATTGAAGGCATGAAGGACGTGATCGAGCAAGTGAACAGGCAGTTTAAAGA
TCCAGTAAGACTACGAACCTTGAACCAAATAAATTTTGTCCACTAACAAGATAAGATGTT
TATTATTTGACTTCAATGGCTGTTCTGTGCTGCCCCCTCAAGTTGGAACTGTAAAAGGAT
AGCTAGTTATTTTTGCTTTTTAACGCTGCTATTGTTTTGGAAATTGTATGCCAGATTTAA
TGTTTCGTGAACTGCTCTTGTTGCAACTGGGCGTGTGATCCTGGAGCATTACGTATGCTT
TAGAGGATGCACTCACAGGCTGCACGTTTTAAAAACCGGAATGTACTATTGACCACAAAC
TCTGTAATTCTTTTATGTAATCTGGGTAAACCCCTTCTGAAAAATGAACACTCCAGGATG
TGTATCCTGTTAACTCTGGTCTTAAATGGAAAGGCGTTTATTGACTAGTAATTTAGGAAC
GTGCCCAACTGCCAGATTTAATGTTTCGTGAACTGCTCTTGTTGCAACTGAGCGTGTGAT
CCTGGAGCATTAGGTATGCTTTAGAGGATGCACTCACAGGCTGCACGTTTTAAAAACCGG
AGTGTACTATTGACCGCAAACTCTGTTAATTCGTTTATGGAATCTGTGTAAACCCCTTCC
GAAAAATAAGCACTCCAGGATGTGTACCTGTTAACTCTGGTCTTAAATGGGAAGGCATTT
ATTGACTAGTAAATTAGGAACGTGCCAAACTGCCACTAGGAGAATATGCTTACACAGTTA
TGCATTACGTAAAAAGAAGTCGAGAACACAATGAAGAGTGGGCTTGTACCACACAAATCT
AATAATAGTCAACTCCAGCTAGTTGACTTTGCAATGATATATTAGTGGTCCTGAGGTTAT
CAAATTGAAATTTATTGTTAAGAGGGTAGGTAGAACTGTTTCATGGTATGCTCGGAATCA
ACAGTTTGTATTGTAATCTGTGACTGTACCTTTTGATGCCTGGCCAAGCATGTATATGCA
ACACGTTTTGTGTATGGTATATGAAAGTTCTACTGGATTAACATAAAATTTTGAATCATA
CTGGATTATATCTTATAAGTTATCATTGGCTTATGTCTCTACATTATTGAAAGCACCTAA
TGTTAAAGATGTTATCATGATCTGACTTGCTTTTTTTGATTTTCTTCTCAGGACTTGACA
ACCTTTGTTTGTGTTTGTATTCCTGAATTTCTTTCATTGTATGAAACGGAGAGATTGGTG
CAAGAGTTAGCGAAATTCGAGATTGATGCACACAATATTATAATCAATCAAGTTATTTTT
GACGAGGAAGGTTAGTACAAAAGATATACTGTCTTGAGATTTTCTTGGAAATGAAAATAT
ACCAGATCCTGCGCAAGCCGAGAATCTTGTTCTCATGAACTTTGGCTGAAACAGAGGTTC
TGCAGTTTTTAAACAAGAGACCTTTAAAATACAGGACATGGCGATGGCTTTGCACAATGA
TTTATTTCGAACGCTTCTCAATGCATCTGTGCATCTGTATCTAAAACCCGTGTTATCACC
TTGCAGCTGTTGAGTCGAAACTGCTAAAAGCGCGGGTAAAGATGCAACAAAAGTATGTCG
ATCAGTTCCATATGTTATACGACGACTTCAACATCACCAAGTTGCCCTTGCTCCCAGAGG
AGGCAAGAAATCCGCACCACTAAACATTTTTGAACTTCGATTACTTACATACATGTGTTA
TGCTTGAAGATAATTGACTTCTATTCTCCAGGTATGTGGTGTTCAAGCTCTACAAAACTT
CTCCAAGCACTTCCTGGCACCATACACGGCGTCGCTGAAAAGGGGCAGCGTGGAGGAGCT
AGAAGAGCGAGTGGCTACACTGAAATCAGGACTGCAAGTGGCCGAGTCGGAACTAGATAG
AGTTAGGAAAGGAAAGCAGGTAGCATGAGCCATTTTCGCCTGTCAGAAGCTCTTGCACTC
TGCAGACACTGGCTATAGAGATTTTCCTCGTTCCTGCATTCTCCGGTCGATTTCCTCCAT
TTCCTGTTTCCCCAGTTGAAAATTTTAGATTTGTTGTTATAGTCATCAGAAGAGAAGTGT
ACTGTAAGGCACGCGATATATATAGGTCTCTTTTTTTTTTGCCCTTCTGTTAGGGTTATG
ATTGGAATTGATTATAGGTTGCTTAGGAGCTGTTGTGGGCTGAGATTGGAATTGATTACC
TAGAATCCCTTGTGCACTGCTGTACCAGTATCTCGTTAAACATAAGTAAGTTTGGAAAAT
CAATAAAGGATGGCTGAGAGCAACAAGTTGACTGTGCATACTAGCATAAATAAATATCTC
AAAGCAACAATGACCACTCTTTGACCAACTGCTACTTTTGTCACTGACGTTTATTGGTGA
TGCAGCATGGTCACAAAGAGGCACGCATGGTGTGTGTGCAGTGGACGGATCGATCAGATG
GCCTTGTGACCCAGCAGGGCCGCGCGTGAGCAGCGCCCACAGGTACGTGCTTCTTCGATG
GATGTGTCGAGTTCGTATGCGGAGCGGAAGCTATGCTCGGGCAGTAGGTTTGGCGTGTCG
TCGACATTGCTACGGTCTTGGTGGGAGGGTGGCGCCTCATCTCTCGCCATGGCAGCATCC
AGTTGGCTTGCAAATGGAAATGGTTGTGGCAATGCAGTGTGCCACAGCAGTATGGTGCGG
GTCACCATCCCGTCGCTTTCTTCGCACGCCCACGAGAGCTGCCAGTAGACGTCATTGTTT
CGGAGCAAGAATGTCACCACGGCCAAGTAGGCAAGTAGCATCTCTAGAAAGGAAAACCGA
GGCGGTGCCTGTACGCACGGTCGCATGTGTGAGAAATTAATTAGCAGATTAATCTAAGGG
ATGTGTTCAACCCCGAACAGTCGTGTCTCCTCTCTCTCTATTGCCAATAGCCATCTGTTC
TGGAGGGATGCCTCCGAACAGACATCTCTTCTTCGCACCTCTTTCAGATGTATATATACT
TAAGAATCAATACAAACAGGACTGATCGTCCATTCACCTTCATTCAATCTCGTTTTACTC
TAACACGTTATCACACACTATGTCTCTATCGAGAGTATCAGGCCAAGAGAAAACAGGGAG
AAGAAGAAAAGAAGTATGAAGGCTGACGACAACTATTCTCCGGTGAGATTCGGCTTCCGG
CTGATCCCGACGGAGGGCCTTCGTGCCGACGTGGCCATGACCCCTCCGACGAGATTCTTG
CCGCAGCATGGAGATCCAGCGGGAGACTGCTCACACGGCGCGCGCGCAACCAACACCTGT
CGGAGCTTCGTTCCGTGAATGGTGGTGTTGACGACGGCCCACGGCCGGTGCATGCAGCGT
CTTCCGACGCTCGGCGACGCCACTAGCCACGACCTTCAACGACATCGGCGAAGCCCTCCG
GCTCGTCCGCACCTGAAGCCACGTCCCTCAACTGGTACGCTGCGGCGACGCCCTCCGGCG
AACGCACAGGGGGACGGTGGCGTAGCAGCACGCCGCGGATCACAACCAGCGGTTGGAGCG
ACGGATCCATCCGGCTGCACGACGCGGTCATCCACCAACCGGCCAGAACACGGTGCCTTC
CGACGCAGCCCCGTCGAGGCCACGACCTGAGATCAGGTGGCGGCAGAATAGCCAAATCCT
CCGGCGCAGTGTGGCATGGGCTGCTGGCACAACATGCCCCTTCGAGATGTAGCGCCCAGG
GATGGCGGATGAAGGAAATGGTGGTCAACGGCCACGCCAAGTCATGGCCCGACGGCCGAC
ACAGACGGCGGCGGCTCCACGTCGTGGAGACGCTCATCAAGCGCAGAATGACAACCTTCA
ATCAGCGACACATCCTCCCTTCCTAATTTCTCCTGGAGATGTGGTCTGTGCAAAAGTGCA
AACAAAAGCCAACTGAATTGATGGATTCGTGCCTGTATGGAGAAGCAATAGAGAACCTTA
TCTCTTTCGCCATTTCACAGTTTAACACTTCATGCTTTCCTAATTCCCAAATAAGGTCAT
CAGCCTTAGTACTAGTACTTGCGTAGAAGCACCCAGTACCACTGTAATTATGCCACATTG
TGCATAATGTTCTAAAACATGCATTCTGCGTGTATTACAATCATAATATTACTGTTTGAG
TGGTCAAAAGATTATACATCATGGATGGCATTGTGTCATCCTTTATATGTTTGCTTCAGC
ATTTTTCATATAATAGCAATCTGGAACAACTATACATTCTGGACGTAAATTAAAAACATG
GATTATGATATGTCATACTTAATATGACTACCTTAAATTGTACTCCCTTCGTCCCAAAAT
AAGGGACTTAAAAATGACACAATTTTATACTAACTTCAGTATAAAGTTGAGTCACTTTAT
ATTTGTGAATCACAAGGTATTTGATGACATCTACTGCACCATTCGCAGATTATTCATCAC
TACTACGAGGTCTACATCTTGTCTGTGTTTACAAGATGATTACCTTTAAAGTGCTCTTCC
AAATATTAA