morexGenes - Barley RNA-seq Database

Contig contig_140117
Source Contig contig_140117
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_140117 (8582 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_140117

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7780	1	1910 bp	MLOC_7780.1	Available	Available	LOC_Os08g33720.1, FRAME:-2, EVALUE:0.0, 13108.m03518 protein lactate/malate dehydrogenase, putative, expressed
MLOC_7779	1	537 bp	MLOC_7779.1	Available	Available	None
CDS Structure of MLOC_7780

CDS Structure of MLOC_7779

Contig Sequence (8582 bp)

>contig_140117 8582 assembly3_WGSMorex_rbca.fasta
TGCATTGCACGTACACGTTTACTAGTAGAAAAGAAAGAGGCGTGAGAGATTAGGAGAAGC
AGTGCGATGGACGTGGTAATTCTTAGACAGTTATCACTGTAAAAAAAAAATTCTTAGGCA
GTTATTATATTTTCAAAAGATCTAACGTAATAACTGTTATAGCTATAGATTGAGATACGT
TTTTTTCTTTTTCTGTTTTTAGTACCGACAAAATCTTTTTTTTTTGCTCATGATTTTTAG
GTAGGATCTACACCGTAATAATTCGGTCCCACGCTAGATGAACGGCTCGTAAAATCTAAT
TTATGTGGGAATTTTTAGGGAGTCTAGAATTAGTATAGGTATAGATTTGTACATTTAAGG
TTGTGGTTGCATCTCCGTGAAGAATTGCCAGTTTCATTTAACATATTATCTTGGAAAGGT
TCTGTATGTGATAGGTTTGGCATGCTATTAAATTAAAATAATGGGTCTTGACGTGCATCA
AAGATTATATATGTTGTTAGCATCTTGTTACAAAGTTCATTTATGGAATATGATTAAGTA
ACTGATTTGAGACATGCAAATATGCATCTACTCTTGCAGTCTATTATCCTTCTATGAAAA
AAATTCTATGATAAATTTTACGCTCCAACAGGTTAACATGCTAAATATCTTTCTTTATTA
CTTCGTGATATAAGGAATGGACATCTTAACTGCTGGTAATTATGGGGAATATCGTGACAT
GTATGGCAATAGGGAAGGATACATTTAAAGCTTTGCAGATGGTATGCCTGGATGATAGTA
AGGAGGATAGCTGGCTCTACATTGTGTAAATTGTTGTGTATCCTTGAAAGTAGGAAGTAT
GCATTCCATGCCCTTAATGCATGGATGAACAAGTTAGAAGGAAAACACATTGTATTTTTC
GTGATTTATGGTGTATCGAAGTCCTCAACTTCATACAATTATTCTAATGTAGTTTTGTTG
GTGATTTTGTTGTTCTCACACTTTGTTTGACTCTTTATATTGTTTGAAATAGACTGATAT
ATTTGATGTTTACATTTTTAGCACTTATTGGTAAGTTTTTTTTACTCTTGATCGGTCTCA
ATCTCTCCATTGTTTGATTACTTTCCTTTGGACCTCTTGACCATCTTAAATTACATAATA
TATGAGATAATGTGCATATGATATGGTGAACAACTATTGTGATCATTTATATGTTATCAA
AATTTGGATTTTTGAGAGTTCATATATGTGCATGAGCCTTGGATAGCGCGCGCTGGTAGG
GGTTGTGTTTGATACTTATTCCTATGCCCATAATATCACGAGATAAATACACATTTTATT
GTTTAAGAAAAGGATAAGTCATCAAGATTTAAACTCAACGAGTAAATGGATGCACTCCAA
AATCATTCCACATGCATGATTGTAAATATCGTAGATTGAAACTGTGAGATTTAGGAATTC
ATTTTCTGAATTCTAATGATACGTGCAATTTTTTTAAATTCTAATAAGACGTGCATTGCA
CGTGCACGCTTACTAATAACAATAGGAACCCCAAATCGACCAACGCCCATAGGGACAACC
GCAAACCTAAGGCCCACGAAAGGCAGACCACTTCAAACTTAGATCCCCAAATCGACCAAC
GCCACCCCTATCGCAACTAAAAATAAGTCAAATAATGGGGAACACGGTGGCGCAACAGAG
GAAGGAGGCAGCACAATGACAATCCCACACGGAACCAAGGCGAGGGAGAGAACCATCCAA
TGCGAGGGATGAAGAAATGGATGACGTCGTGAGGGACACTTGGAGATTGATAATCGGGGC
CAAATCGATACCCTGGGAGCTCCATTCCCAGGGAGCTTGCTGAATTAGAGATTTATCTTC
TATTCAGTATACAACAATTACCTCCTGACATGAACGAACAATTTACAATTATTCAGACAA
TCGCACCCCTGGATCTGTAGAAAGGGCTTCATCTCAGGCAGCAGATGAGGTTACAACAAG
CACCGATGAAGTTTGGTGGTTCGCAGACTCCATTTTGCTTGCTCGCATGATGGGTGCACC
AGCAGCTCAGGACAAAACGGCCAAATTGTACCAAAACAGCATATGCACTTCCAGCAGCCC
CTCTCACACTCAGAGACATTGTTCCCATCGAAAACAAGACTGGCAACATAATTTTGTATA
GACACGCCAACCAATCACTATAACAAAATCAATTAAAACACATGGAAAACGACAGAGTAT
CCAAAGAAATGATGTTTCCATCAAGAGTATAGGAACCTGATGGTGACCACAACATAGTTC
AGGTTCCCACATAAGAGGTTCCGGTTCGGGCAAGGGCAACTATCAAACAAATGCTTTTAT
TATTATTCCACGGTTTGTCAACTTCGGAAGCTACAAGAACAGCAGGTGTAATGTGTCAAA
CAAAATAAGGCCCCGGAACAGGGAGTCGATTCGGGGCTTCACGCCCTCATGCAATCTAGA
ATCATAAGAAACCGACCGACAACTGAGAAATATATCTGCTCCAGGGCATACTCCTTCCTA
CACGATGTCAACACTCTAGGCTGCAAAACTTAAGACGAGGACAATCATTTTGCCTTTATT
CTCTTCATACGGAGTTATCGTTCTCCTTTACCTCAAACGGACGCGGTGGCTCCCTGCTGC
TTGTGCACAAACTCGATGCCCTTCTCGATGCTGGCCTTCAGCTCAGGCTTCAATGCCTCG
AGTGCCTTGGCCTCGTACTCGGTCACTCCCTCCAAGTCAGAAGAGATGATGGACTCGACA
CCATTCTTCCCAATCTTAACTCTGGACGCAAAGAATGGCAGCTCAGTTAGCTCAGACTGG
ACATACGTGCACTCGTAAACATCTGGGTCACCAGCCAATGCGCGGAGTGACGACTCGACA
AATCTGGCAGCAGCATAGGCCATGGACAGTGTAGCAGATCCAGCACCGGCCTTCGCCTCC
ACCACCTCTGTCCCAGCATTCTGTATCCTCTTTGTCAGCTCTTCGGTTTCCTCATCCGTG
AAGGTGACAGATGGCCTAGCCTTCGACAACAGAGGTAGGATTGTAATTCCAGCATGACCA
CCAACAACTGGGACATCAACGTCAATGAGCTTGAGGTCTTTCTTCTGAGCTACAAATGTG
TTAGCCCTGACAACATCTAGGGTGGAAACTCCGAAAAGCTTCTTGGGGTTGTAGACACCC
TTCTGTTTCAGAATCTCAGCAGCAATTGGCACTGTGGAGTTGACTGGGTTGCTGATAATA
TGGATAAAGGCCTCAGGGCAATTGTCTGCAACAGCCTCAATAAGCGACTTGACAATGCCT
GCGTTGATGTTAAACAGGTCATCACGAGTCATGCCTGGCTTTCTTGGGACCCCGGCAGGG
ATGACAACGACATCCACACCTTTCAAGCAGTTGGCTAGTTCTGCAGGGCCGGTAAAGTCC
ATGACCTGAGAAGGTGTGTTGCAGTGGCTGAGATCAGCAGCGACTCCCTTGACATTTGCA
ATATCATACAGGCGCAGTTCTGAGACCAGAGGAGACATCTTGATTAACAGACCCAATGGT
TGACCGATGCCTCCAGCAGCACCAAGTACTGCCACTTTGTAAGATGCCTCAGGTAGTATC
TGAGCCGCAGACTTTGCCTTTGGCACGACCCTTGTGACACCAGACGCCCGAAGCGATGTG
GTCTTGCCAAGGAATGAAGAGCCGAGTTCAAAGCCAATTGATGACGACGACGATGCCTTC
AAGCCACCGAAGCTTGTGATGCCATGACTCCTTGGCCTTGAAACCAAAGCGGCCTGAGCA
CTGGCTGAAGTCATGGTAACAGCTGACGCCATGTCCAACTGCAGGAACAGAATTATATCA
GATCTATATACAACGGTAACATGCAGAGTCTAATTACAAATTCAGTTTGAGTGTTGGAAC
CACACTAATAGCCTAATACAGTGGTAGCACGCAGATTCTCACCTAATCACAGAATCCATG
GAGTAGGTGTAGGAACACTTGAAACAAATGGTAATGAGGATCAAACAAGGGTATTTGATT
GTAAGTTATACTACTATGTATCTTCTTGCAAGCATCAACGGAGCAAGTGATGTCAAACTA
TTCCCACCCTCCATTCTGAACACCAAAGGAACAGCAGTAGTAATTATGAATTATTACTGT
GATGGGACAGGAGTTCAAATTACACATAAAAAACTTGTGACGTTTATTCCCCGGCAGCGG
AATGCAAACAAGTAGTAGTATACTACTGTAAAAACGTATCAGGAGATAAATTTCCCCTGG
TTAGCATGATGCAGGATCTCGTCTTGTATTCAGAAGGCAGCAAGTTAAGCTTTTGGTAAA
CTGACATGATGCAGGCTGTGCGATTGCGATACGCAGAGAATCAGATCCCTGGATCTGTGC
AAAGGGGGGGTTCATCTGTATCATGGCAGTGGACGGAAATCTTGCAGAGAGTATGAGCGC
ATTGGCGCATCTTGCAACAGCAATTAGTAACGGACCCGTGAGGCCATACAAAACGTCGGC
ACGAGCAGGGGCGGATCTAACCCTGCCCTGGTGGGATCGACTGATTTTCAACAAGAGAGA
GGAACTTGCGGTGCGCTGGATGAGACGAAACAACCTAGTAGCTGCTCATACCTGGAAGGA
AGGGAAGGAAGGAAGGAGACCGAATCAGTCGGCAGAGAACTCCTGGGACGGGGTGGAGAC
AGCGGCGCGGCAGGATGCCCCGGGGGCCGAGGATGAAGTAGGGGAGCGGCGCCGGCGATG
CGTGGCCCGAGGGGGCGGGGTTGAGGGGGGCGCCGGCGGTAGGTGGGCGGCCCTTGGCTC
CTCCTCACCTCAAGCCTCAACCTTTGCTCCGTTTCTTGGTTGGGGGCAGGTGGCTTTGGA
CTCTTGAGATGATGGATAAATAAATAAATAGCCGGGCTGCAGCGGCGGCGGCGCATGAGA
CCAGCTACTATACCAGCCTTGATTTTTCTAACCGCGCACGCTGGATGTAGCCTCGGAAAC
AACGGGCTGCCTCCGCCGTTGGCCGTCGCTCCTTTCCCTGTCCGTCGTTAGGTCGGTTGG
GCAATACCAACTTGAACACGAGGATCTTGCAATCTGTTGTACCCTTTCCAAACATACATT
CGAAAAATATCAACATCCTATCTATATAAATATGACTAAAGTTAACGACATGAAAATTAA
ATTGGTTAGAGTACGGTAAGAACTGACCTCTCTCTTCGTGTTTGGTCGAACAACAAGTTT
ACATCATGACTAGTACATATATATAGGATCTGTTTGAGACTGCTTCAATTAACCAAAATC
AGCTCTACTTCATCAAATTCATTTCGAAGCGGTTTCATACAGAAGTTATAGCACCACCAA
GAGAATGTTTGGCTTCCATCTAGCTCCAACTTCAAAAATATAAAATTTGTTGGAAAGAAT
CTAATTGATTGGTTGAGGGGAAAGAAATGAAGGGTATCCACTTACTGGTGGCAGTGGTGG
ATAATTTCCCCCCAACTCCAGATTCTAGAGTTTTTTGAAGCACCCTCTCACTAGCTTCAT
AAAAACTTTGAAGTTGTACTTTCAGATTATAGTTTTTTGCGGAGCGGCATATTGTGAAGC
TACCCCGTTTGGCTTGTCTTTTCTGAAGCAGAGCTGAGTTTTAAGAAGCAGAGCAGTCCC
AAACAGACTCATAGTCTACGCTACTACATATAATACATGTTATGCATATATACAATATAA
TATATATTACGATCCCTAGTATCTAATTACCGAAATTCCTTACCAATTACCGGTGATATT
CTTCGATTTTAAATATGACCTTTTAAAGTAAGAATTCCGTCAATTCCTCATTAGTTGCTC
GTATGCGATTCTTTGGTAAGAGTTCATTCCGCGTCTGTTCGATCTAATTAAAAAAGGGTC
AATATATATGAATGAAACTCAAAGCAAAATAAAATTGTGAATATTATTTACGTACTTTAA
GTTTTCCTAAAATTATGTCATTCTCACATGTTGTTGGACGAATGAACTCAGAAACGTAGT
GTACGCATAAACTATTTCCATCTCCCTGCCTCAAACACTTTATAAGAATAGAGTTCAATC
AAANNNNNNNTCAAGCATGATAATGGTATTAAAACTAGAATCAAAGAGATGCGCGGACCT
ACCTAGTACTACTTGCATTGAGTTGTTTCAATCACAGCTCTTCTTTCTATTCACCCTTGA
CCTTCGTGATGAACTTTTTCCAAACTCTGTCCGACAAAGAAAATGAATAAAGGAGTTATT
ATTTACTTGATATCAGGAAATGAACAAAAGTTGTCGATATAGTGCGATAATGGTTAAAAT
TACCTCTGGAGCATTTCACTCAGGTTCGCCCACATCTCTTTGTCTTTACGTTTCAAGTCC
ATGACAAGTATTGCTCCTGTGTCAACCTGAATGACTATCAAAATAAAGTGGAACCTATGT
AAGCATAACTCATCAATTACATTTAACATCGAGTAAGTGAAACAGAATGTGTACAAAATA
ATAACACTCACTTGAAGTTGCAAGGAAATAGTATTTTCCTTCTATTTTGTTGTTCAATTA
ATGTCCTTAGCAAGTTATCCTCTCTGTCCTTAGTGTTTTTTGTATCGTATATTCATGTAT
TCTATTTGGGTTAATGAATCAAATGTCATAGATTTGTCCTCTTTTGCATTCGAGAATTTT
CAATCTACATAATATAGCGAGAATAATTATACATGCAATGAACGAGCTGAGCTTGAGACT
TAATTACAGGAATAATAATTACAGACAATAGCAACTGATGATAGATTTGTCGATGGTGTC
TTGATTATATAACTGAAATAATTCATCAAACTCAATGTACATCTCCTCGTCTCCATTGAA
GTAATGCTCATCTCTAATTTCCACCATGAGCCAGTTGCTCCCTTCCTTTGAGGCTTCCAT
GTACCACTCATGCAATCTTCGCATTTGTGTTGATAGAAGCCGTACCTCCTCAGGTCTCAG
GAGAGGCTTCTCGTGTTGGTATATGTATGCTAAATCAGCCTTGGGGAACTCTACCTGCTG
GCCTAAGTATTGAGCAAGAGTGAAACCAAGATCACGAGTCACTACATTCGGATCGATATC
GGAAAACAACCTTAGTGGGGGCACGATTGTTTTTTCTGTTCTCCGAGCTGGGGACTTGTT
CTCCCCCCTACACTACTACTTTTCGACCGCTGCACATGTTCTTTATATGACTCCATAATA
GAGCGATCATAGTTTGTTGACAGCGAAGGCGGTGGTCGCGTAAGGTTTTCCAGCGCTTCA
CTTTTTTGGATCTATTTTCTCCTTTGGCTCAGACCGTTTCGGTGCAAGCTGATGTGTCAC
ATCGGCATCCACGACCATCTTGAGGGCCTTATCAGTCATTTCTTATGATAACTGCTTGGC
TGGAGCCTCATTGACGCTCTTCCTTGTACCTTCTCCTTGACGCGTCGGAGACGGCTGAGG
CGACGGAGGCGGCGGAGTCTGCTGACTTGGCGGAGACGGCTAAGGCAACAGAGGCGGCAA
AGACGGCTGACGCGGCGGAGGCGGCAGAGTCTGCTGACGCGGCGGAGAAAACAAAGGCGT
CAGAGATAGAGCTCGATTGTGACTCTGAGGATCAATAGCCTTGGCGTCCAATATGGAAGC
ACGATATATTCCTTTTTCCATAGAATGGTAGTTTTCTCGCATCTCCCACTTCAGTCTCCC
GTTCACCCGTAGGGAATTCAAGCTCTAGTTGCTCAAATCCCTTGATAACTTCATCCACCC
CGACAAGAGCATACTCATCTAGAATCGGAGGCAATGGTAAGTTCCATTATGTACAGGAGG
TAAGGCAAAGCCGACCGCAACCTTCAAGGATATGTTCATGCATTTCGCATGTAGCTCACA
ATTTTCCATCTGCATGATATCATCCATGGGGTAGCGAGGAGCCATCATATCATCTATGTG
CCGAACGTGCTCCGTGGAAGCCATGCTGGTTTTTCGTTGAGATGGTGGGCCTGTAGTATC
GAAAGCAGGACCTTCGTGCCGCTGAGATGGGTCGGTAGCTTGCTGGCTGGTAAGAGCCTC
TATTTGCTTCTACTGCAACGCTAATTTTTCTTCTATATGCTGCACGCGGTATGTATCCTG
TTTCTATTTTCTTCTTTGGCTTTAAGTGTCACTACAGTCGAGAAACCCAATCTTCCACGG
AGCCGAGCCTGATGTGCCTTGTGTCTGTTCGCTGTGTTCATCATTCCCGAGGGCGCGTGT
CAGCTCGTCGTTCTCTCTATCGGGATTAAACTTTCCATCCTCCACGTCCTTCATTGCAGC
TTTAAGGGCTTCGAGGGGTGTTGCAAGTTGATCTTTTGTAAAAATACACTTCCCTGTTTC
TGGGTTCAACTTTCCCCCATGCCTGTAGAACCAAGTCTTTGCCCGTTCGGTCCACTCCAA
TGTCTCTGGATCAATCCCTTTATCAATCAAGTTGTTCTCCTTTTCTCCCACTTAGGCATG
GCAACCTTGTAGCCACCTAGCCCCATAACACGGTGATATTCTGTGACAGCCCGAGACCGA
CGCTCCAGAAGATTCCCTTTTTTCCGTTCTTGTCAGGTGATTCGTTTGATTGTCGCACTC
AT