Contig Data
morexGenes
Links



Map Locations of contig_139943 (6210 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_139943

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_7716 1 766 bp AK376628 Available Available None





CDS Structure of MLOC_7716






Contig Sequence (6210 bp)

>contig_139943 6210 assembly3_WGSMorex_rbca.fasta
GTACACGAAGTGCATTCAGTTTTTTTTCACAACCCTCTCAACTTTTTAGCACNNNNNNNN
NGGGTGAAATTATGATACCATGCCAATTTTCAACCTATTCAGAGTTCATTTGTAGTGCTT
TTCAATTTCTGTTTCATTTAGCTCAAAACAAATCAGTANNNNNNNNNNNNNNACCAAATG
AAGTCAGAAAGTGTTGGAAATTGATGACGTTGCCTTGAATGGTTAATTTTGAACCCACAA
AAATCTAGAATTCAAATAAGTTCAAAAAAATGAAATCTCTTTTGTAGCAAATGAGTTTTC
GTAAGAAACCCTAATGCTTCGAAAGAGGTTGTCCGATTTGTACACGAAGTGCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATG
CCAACTTTCAACCAATTGAGAGTCAGAAAGTGTTGGAAATTGATGATGTGGCCTTTAATG
GTGCATTTTGAACACACATAAAGTTTGAAGTTCAAATAAGTTCAAAAAAATGAAATCCTT
TTTGTAACAAATGAGTTTTTGTAAGAAACAACCAAGGCAAAAAACGACGACATAAATGTT
TCACATCTCTTGGCCACATCTATGAGTAGTTGCAAAGGATTATTACAACACAAGTTTCCT
AACAATAGTTTTGAAATGAAAGAAGGCATTTCAACATGTACATATGCAGAGCAAAAAGAG
CTATCATGATGCCATTGTGGATAACTAGGCCCGAGAATGCTAAGAAGTTCCTCATGACCA
TGATCAAGCAACCTTATGCATCGGAGGAGCAATGTAGTCTGAGCATTGAAACACAAAATA
TTCCATTGATTGACCAAAGAACCTTCCAAATCCATGATGCACCATAAGCTTCGCCATTTT
TGACCCTCGAAGGGGAAAATTGTTATAAAGAAGCCATAAGCCCCACAAAATAGCAGAAGT
TATATCAAGTTAATGGAATCAGATTCATTTCTCTGTTCAAAAAAGTACACTGGGAGGAAA
AGGATGTAGGCACTTGAATGTTAAGGATGTCAGCAATTATATTCCAAATTTTGTTTGCAG
CAATGCTATCAAAAAATAAGATGTTGAATGGATTCAAATTCATCACGGAACACACATGTA
GGATCAATAACAGGATGACGTTTAGCTAAATTATCTCTACTTAAAATTTTATTGGAGAGA
ATGAGCCAAATAAAGATACAAATGTTTGGAGACACTTTTATTTTTCGAATACAATCTTGT
AAGTTAGAAAGCACGCCGTCAAAATTAATCAGCTTATGAAGAGCCTTGATAGAGTAAACA
CCAGATGGTGTAAGCATCTAGATAGCCGTGTCATCCTCGGATGAAATTCTAATATTTCCA
AATGGTGTCACCAACTCACAACACCTAGACATAGTGTGTGCATCAACACATCTCGTGAAA
GTAAATTTTAGATCATGACCATCCCAAATTTTAGCAACAGAGGCATCTTATAATGGACAT
ATTTCAAAGAGGTCCCAAAATTGAGTTTCAATCTTCAATCAAAATGTCATCCTAGAAAGC
AATAGGTTGCTCATTACCAAGTTTCCATATATAAAAAAATGCGGCATGAAAGGCCCAAGA
TATGCTCTTCAGAAAGGGAGACCCCAACCTAGGTTTAGCCCAAAGAATATTGGATTTATC
AGGAAAGGTGTTTTGGCTACCTGATGCATTTGCATCCGGATGAAGAGTAACTTGAAAAAA
TAATAGTAACTGTTTCCATGAAAATCTGAATTTTTTTCTAGATGTTCGTGTTAGTGTTGC
AAGCATGCTTGAAATTTGTCATGCGAATCGAAAGAGTGGTGTTTCCTCACTGAAAAGAAT
AAATTTGGATGTGACATTTTGGGGTAACAATTGATGTTTAATTTGTTTTTGTTTTTTTGC
ACATACCAATATGCTTAACCTTTTTAACTAAAAAATTTCAGGCAGCATTTGAATGTGACA
AAGAACACATTTTTTTTTTAATTTTTGATCGGCAGGAGCACGTGCTCCCGGAAGCCGGCC
ACCTGATCTATTGTCAAAGAATCTCTAACTCCAAGAGGCAAGCATAGCCATATTAAAATC
CCGTAGACTAGGGACTCCCAGTCCATCAAATTCTTTCCTTCTAGAGATGAGCCCCCATTT
GACCAAATGATACTTATGTCCATGTTTTAACTTACCCCAAAAAAATGAGACAATTGATTG
CCAGTGGCTTCAATGTCACATTTTGAAAATTAAGGAGATGTTGTTGTCGATAGTGAGGAA
CGTGTGATGACTTTGTATTAATCTATTCATTAGCATTCTGTATCATTAGCATCTGTATCG
TTAGAAAACAAAAACAAAATTTCTATAAAAGTTATAATAATGTATTAATCTATTCTGGAA
TGATAAAATTAAGTATTTTAAATAGGAAGACACTACTGTTATTTATTCTGGACCGGGCTG
GGCTCAGGCTTAGATTTGTAGGGTTGGGCTTTTAAAAGCCCGGCCCAACAGATGGTCAGG
TCTAGCAGCGGTCCTCGCGCATGCGTGCCGCCGGGTGTCAGCGGCCGACGCACACATGGC
GCGCCGATCGTATCGATCAATCACGCGAATGTCTATACTGGTCACAACACGACGAGGCAT
GCATGCCATTTGTGTACAGAGCTAGTGAGCAACCGAGTAACGCATATAGTACACCACACA
TGATTTCAATTTTCAAAGAAGAAAAAACTTACATGATCGAAAGAAGGATTCCACTGTGAT
AATTGGCAAACCTTACAGCAAACTCTGAGAACGAACCGAGCGAGACACAACGACTCGTGC
ACACTCGTAACAAACATACAAAAAAAAGGAAGAAGGGAAGCTTGCCGAGACAAGCTGAGA
CTTATTCATGGACACGCATGGACGCACGCAGGAAGAGAGAGGCGCAGTTCAGCCACCGTC
GTACGTGCACGGGCGGACGAAGCTAGGCATGCATGACGCGAAGCAGAGGCCTGTTGGTTA
ATGGTGGCAGTGGGTGGTGCAGAAGCAGCGGCGGCGGAACCCGCGGCACTTGCCGTCGGG
GAAGCCCTCGGTCTTGCAGACGTTGGCGCAGTTGGACCTGCGCACGCAGGGCCCCCTGAA
CCTGTGGCTCCGCGACTCGCACGTCCGCGCCTCCGCCACCATCACCGGCCCTCCCAGCTC
CCCTGCAAATGCAAAGCCAATCAGATCAGACCACAAGCTCAGAGCCAAACCAAATACAGT
ACCACACACACACCGGCTCACTGCACCGTTGCTATGCGTACCTGTGGCGGCGAGCAGCAG
CACGAGGAGCAGCGCCGCCGAGAGGAGCCTGCGTGAAGCCTCCATGGATGGATCGGCTAC
AGCTCGGAGGTCAGGGTGTTGGGGGAGGGATAGAGCTGGTGTGTGTGTTGCGTCTGTGTG
TGAGCAGCCCAGCCCGGGGGCCTGCGTTATATAGAGGCACGGCGCCGCACGCCCAAGCGA
TGCCGATGCCGATGCCATGGGGGTGGTGGTCACGCCACACGCACCGATGCGGCAGTTAGA
GCATGTGTGCGCCTCGAAGGAAAAGGCAACGAGGCGCCGAGCAACGTGGACGCTCCAGCA
CGTACGTGCTGTCGTGCTCTGCTACCGTCCGCTCCGCTCCAGGAGGCGGCTCGGCGATCA
CAGTGCAGAGCTAGCTAGCTAGTCGCTCCGTTTCTAAATATAAGTCTTTTTAGAGGTTCC
ATTAGTGGACTACAAACGGATATATATAGATATATTTTAGAGTGTGATTCACTCATTTTG
CTCCGTATGTAGACACATAGTGAAATCTCTTAAAAGACTTGTATTTAGAAACGGAGGGAG
TACTACTAACTAGCCGTTATACTTGCACTGCTGCGAGCGTTTGTCTTCGAGCTATGGTGA
ATCGCTAGAGCAAATTCACGTGACTTACGGCGCCGACGATTATTGGTTGGGTCGCCGTGA
GCTAGCTAGGGAGCGACGAACGGTTTTGTCGCGCACGCCTCTCGTCTCGTGAACACGAAA
CACTATGAGCATCCACGTTTATGACGGGCTAATTCCGTCCATCAAACGTATGTGCACACA
TTGATTGGTCATGTGTTATATACTCCCTCAGTCCCAAAATTCTTATCTTATATTTGTGCA
GACATGAATGTATATAGTCATGTTTTTGTATTTAGATACTACATTCATTTCTGAACAAAC
CTAAGACAAGAATTTTGGAACGAAGGGAGTATATGTATATATTTTTTCATAACCAACCAC
CTCAATTAGTATATTCTCTTCGTCACGGTTTAGAAGACGTGCTTGAAAATTCTCTAAAAC
CTATATGATTATTGATTGGCTGTAATATAAGCTTAAAAATAACATTCACACTATGTATGG
AAATATGAGTAGTATAGCGGAGTCTAATTAGCTACTAGAAATAAATTCAATGCGCCATAA
ACCTTGTCTATTATGAAAACACGCGTAAATTTAACCATGTCTTCTAAATTATGACGAAGG
AAGTACTACCTTAAATCGATACAAACTCATTCAACTATATGAATGATATATACACAACGT
TCAACTATTAAATATAACATGTCATCGAACTATAAACAATTAGCATGTTTGTCTATTGTG
AAGAAGACCATACCCAGTTGTCCTTGCCCTTTCCAATGCCATTGTCGTCTTTCTTACGTA
AGTACCGCTTGAAGATGCGGTATGCATCAAACCAGCGTTATCCTTTTTTGATGGTTGTCC
GACCATTTCACGGACCGCCTGATCTTGCTCTCGGACGAGGGCACACGTTTTCCTCCGTTG
CCGCTTCTTCATAATGCACGCGTTAGTTTCCTTCTCTACGGCAGCCCGCGCCGCCGCACC
AGCCGTCGTCATGTTGGCAACGAGTCCGGGCTCTGAGGCCCTTATCCTCTCCTTCTCACG
GCAGGCACATCGGTTCTGGTGAGACTCATACTCCGCACACCGATGATAGGGAAGGAGAGA
CTAGAAGGTTGTCGGGAAAACGATGATCCATCCCTGGAGGATCCGTGAGCCTGTTGAGCC
GGCGCTATGGATTTGCACGGGACAGATCCTGCTATCGGTCGGGCTTGTCTTCTCTAGAGC
GACGGAGTGCAATGCGGACGGTCATTGGCTTCTTCAACCCACACGTGATGACACCCCGGT
CACTAGATTCGGACTGGCCGTAGTCAGATCGGCTGCCCGTCATGTCGGAAAAGGTCGAAG
ATCGCCGAAGATGAGCTCGAATGACAAAGGGGGGTGAAGGAGAGTGAAGCGCCACAACCG
CACTACGCACCCCTAGCAAAAATGCTAGATATGTTTCGCGGGTCACAGGACCGGGAGTGC
ACAACAAAGATGCAGCTAGCTAGCCGCCATTAAAGCATCTACGACCGTACATCCCAAATC
CGTCTCAAATGTTCGGACAAAATTGTCCAAACATTGAATGGTCATGAAAAATCAATCCAG
ATGAGGGTCTTAAACGAATTTTAAACACCGAGGCCGATCGACATCCTTTACATCTAGCCA
AAATATGGATCGGGTTAGACGTGACGGTCGGTCCGAACGTTTAAGATTCGTTTAAAACGC
CCGTGTGGATTAATTTTTTGTGAATGAATCATCCGCTTACATGTTTGTAATGAATTTAAG
ACATTCGGATGTAGATGCTCTAAGAGCATCTTCAACAGCCGTGCTAAACAAGCGCCGCGC
CTTAAATTTACTCATTTTAGCGCGAGAGCAATCGACAGAGTGTCTCAAGCTGGCGCCCAA
TAACCGTGCGCGCGGCATATAGAGTTGGGCGCACGGTCTGAATCGCCATCGCGCGCTGCG
TATTTGAGGGATCCGCTTCCACGTGCGGCACACACGAGCGCTCGTGCCGCACTCTCTCGA
CCGCGCCACCTTAGCCCCGCACGCGCCGACACCGGCAAACTGACCCGATGGACGCACGCG
CCGGCTCCCCCCCTCACCGCATCCTACAGCGGCGAACCCTCAGCCGCCATCGCCGTCGTC
GCCACCACCGCAAACCCTAGCGCTGGGAGCGTTGGCCTCCGCCGGAGCTCCTCCGAGCAT
CATCCTCGCGCGTGGCCTCTTCATGCCGCCGCGGATGACCTCGGCGGCGGGCATTGTCGC
GCCGGCGCCGGCGCCCGCCGCGATGAAGCCCTGTGCACCCCCCTCGACAGCTCCCAAATG
CGGCGCGACCGAAGAAGGGCAAGACATCCG