morexGenes - Barley RNA-seq Database

Contig contig_139654

Source Contig contig_139654

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_139654 (6057 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_139654

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7611	1	614 bp	MLOC_7611.1	Available	Available	None
MLOC_7610	4	2227 bp	MLOC_7610.2	Available	Available	LOC_Os12g03090.1, FRAME:+1, EVALUE:2e-88, 13112.m00263 protein ribosomal protein, putative, expressed

CDS Structure of MLOC_7611

CDS Structure of MLOC_7610

Contig Sequence (6057 bp)

>contig_139654 6057 assembly3_WGSMorex_rbca.fasta
GAAGAGTCTTCTAGCTTGAAGCTTAAGCCAATCATATTCCTTTCTTGCATCAAGGGGCAT
CTCCACATAGGCCTTTAGTCAAAGCATTTTTTAAACTTTTCTGAAATATACTTGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGTTGTGATCAATTATCAAAACCACTACAGTGAGCAAT
TGTGCCTTCAGCATGCATCAAATAGTGTGTGTATTTTGCAATTACAATTATGCCGAGTTA
GGTAACATGAAGTTGCACACTATCCACATACATGAGATAAGTATCATTTTCTACAAAAAA
AAGAAAGGAAAAATGGGACGCACGAGTTGCACATGTATTGTGGTGCTTGTAATTATCCAT
GAACCCCTTTTGAAAACGTGCACTTGTGACCTTATTATGAAAACATGGAGTTATGACCCC
ATTACAAAACTTTCAATTGTGATCCATTAGAAAACAAGAAGTTGCAATCTTATTTTGAAA
ACTTGCAGTTGCAACTCTCACTAAAACATGCACTTGCAACCCTATTTTAAAAGCATGCAG
TTCCGACCCTCCTTGAAAACTTGTAATTGTGACCCTATTTAAAAAACATGAAGTTGCGAC
CCTCCAGCGGTTACGGCCCTATTTGAAAAACATGTAGTTGTGACCCTCCTCGAAAAACTG
CGGTTGCGACCCCATTTGAAACTTATAGTAGCGGCCCCTTTTAAAAACATGAAGTTGTGA
CCTCCATTCCTCACTTGAAAAATATGTAGTTGCGCGCCATTTCAAAAAACATGCAGTTAC
GACTCCAACTAAAAAATTGCAGTTGTGACCCCATGATAAAAACTTGCTACTGCGATCCCA
TGAAAAATAAGCAGTTGCGATCCCATATTAAAAACTTGCAAATGCGACCCTCACAAAAAA
CTTGTACTTGGGATCTCATTTTAAAAACTTACAGTTACGATCCTTATTAAAAACTTGCAA
TTGTGATTCCATTTTAAAAACTTACAATTGCAACCCTCACAAAACCTTGCAGTTGCGACC
ACGTTCTGAATTTTTTTACTTGCGTTTCTCTAAACCTGCAATTGCAACCTCTCTTTAAAA
CTTGTAGTACCAATCCAATTTAAAAACCTATAGTTGAAACACCGACTTGAAAACTGATAA
TAGATGATAGCAAAGAGCTACACGAAAAAAATGCAAAAAAGAACTCAAGGTAGGAAAATA
AAAAATTTAATAACAACATGAGATTTTTTTAAAAAATATACTATAATATATATATATATT
TTTTAAAAAGGAAAACATTTATTTTAAATAGATAAAAGGGGCACCGGCTCTTGTAGGCAA
CAATGCAGTGGGCCGCAGGTGTAGATAGCCATAACGGGCCAGAAGAAACGGGCCACCAGT
AGAAGAAAAGAGGCCCAAACAATAGACTACAGCCCGACACGAAGAAAAACATTGGGCCGC
ATCCACCATAGCAACACATAGAAAAACCTGCCCAGATTTGATCAAACAGTGATCGGGGCG
AAACCCTAGCTCCCCCCCCCCCACAGGCCGAAAGATGCCACTGTGTTCAAGGCCCACATA
AAGTCCAACTGATTCATCTAAGCCCAGACGCTTTCAGCCTGGTCCTACATATCATAGATA
CTGATGCCCGAAACCCTAACGCCTCGACGCTATATAAACGATCTCTCGTCGTCTTCGTCG
CGTCTCCGCGCCGCCGCCCAAAACCCCGACCCGCGCCGCCGCGCCGCCGAGCACACAGCA
ACCAAGCACACCGCCGCGCTCACAGCAACCAAGCAGACGGCCGCAACCACCATGGCAGCC
GTTCTCACTCGCCCGACGCCTGGCACCGTCCAGTGCTTCGGCCGGAAGAAGACCGCTGTC
GCCGTGGCCTACTGCAAGCCCGGTCGCGGCCTCATCAAGGTCAACGGCGCGCCCATCGAG
CTCATCCGCCCCGAGATGCTCCGCCTCAAGGCCTTCGAGCCTATCCTGCTCGCCGGGAGG
TCGCGCTTCAAGGACATCGACATGCGCATCCGCGTCCGCGGCGGCGGGAAGACGAGCCAG
ATCTACTCCATCCGTCAGGCCATCGCCAAGTCGCTCGTCGCCTACTACCAGAAGTACGTC
GATGAGGCCGCCAAGAAGGAGGTGAAGGAGATCTTCGGCCGCTACGACCGGACGCTTCTC
GTCGCCGACCCCCGCCGCTGCGAGCCCAAGAAGTTCGGCGGTCGTGGCGCCCGTGCTCGT
TTCCAGAAGTCTTACCGTTGATCTACTGCCAGATCACCTCTTGGGTATGGCGGTGGTGGC
GTACTGCCTGTCTACTTATCTATCTACCTTTTGCGGCTAGTAGTTTCCCATCTTTTGGTC
AATGAAATGGATTGTCAGGTGCCCGTGCAGTATCATTTTGCTTTATGCCTAGTTAATGGG
ATTATGTTATGTTTATCTTGTGTTAATGATGAGACTGGATGTTTGGATGAAGTTTTCTGA
ATTACTTCGTTCTGTTTGCGCGTGATTTTTGGTAGTATAACAGATGGTACAAGCTTTGTG
CTAGATAATAGAAGTTATGATATGCCAGTCATTTCTTTGTTTAAATGTTTGATTTGTATT
GGAAAATTTGCCAACCATTTATATGCTGTAGGTTCATGTTTGATCTCTGAACAATTTATT
TTGGTACATTCTGAAGCTATAAATCAAGCATGACCTCAGGCTGCTAGCTTTGTAGATTCA
TGCTTCTGTTGCTGTGATCTTACAGTGTCTTATGGCTTTGGTTCCTCCATGTATCTGTAT
TTCCACCTCCAAGATTAGGCATATCTGTCAACTAGAAATTGTTCAGAGATCATGCATGTT
GCTGTCATCATTGATGCTAATATGGTTATTCATGACCCAGTTTATATGCCTTCTGCTTTG
GCCTTAGGGTGGTTGTTTTAATTCACTTTCTACCTAGATTAGCAGATGGTCGGCATGTCC
TGGGTCTCTTGGGAAGTTTTGCTTTTACAGTCAGCATTTCTTCCTGTCTCTTGGGAAGCT
TTGCTTTTACCGTGCAACCAGACTTGACCGCCATATGCTTGGTAGTTTTCAACTTGATTA
ATGCCCATTTTTATGCAATCCCATTCTTTACCTCTTAGACCTTATGCTAGCGGTAATCCC
CTGCCTCTTGTTAGCGCCCATTCTGAAATAACAATGGAATCATTCATTTTTGCTCTCTGT
GCTGACAATTGTTATGTTTATACGGAGTATTATGTTAATGATGAAACTGGACGTTCAGAT
AAAGTTTTCTTAACTGCTTTGACCTGTTGTTGCGTGTAACAAGAGTTAAGATATCCTAGG
CATTACTTGGAACAAGTATTTGGTTTATAATGGAAAATTTGCCAACCATCCCACACTTTT
ATTGACCAAAACTTTTTGGTACATTTTGGAGCAATGAATCAAACATGCCCTCAGGCTGCT
AGTTTTGTAGGTTAATACTTCTGCTGCTGTTATTTCACAGTTTCTTATAGCTTCGTCTCC
TGTTTCTGCATTTCACCGCCAAGAATAATGGATCTCTATCCACTAGATATTGTTCAGAGG
TCATGCATGTTTCTGTCATCGTTGTTGCTGATATGATGTCTTAGTTATGGTGTTTCATGA
TCCAGTTTATGTGCCTTCTGCTTTGGCCTTGGGGTTTTATTTTAATGCACTTTCTACCTA
GATTAGCAGACGGTCAGCATTTCCTCGGTTCTCTTGGGAAGTTTTTGTTTTTTACTGTCA
GCATTTCGCTCGGTCTCTTGTGATTGTTTGTAATGCCCATTTTGACACAATCCCATTTTT
ACCTATTAGGCCTTATGCTAGCGGTATGCCCTTGTCCCTTGTTAGCTCCCATTCCCATTC
TAGTACTAACTCCGTCACGGTTTAGAAGGCACAGTTACGGGCATTTCCACAACACACAAG
CGCATTGTATTTACTCCTAGCAGCTAATTAGTACTCCGTTGTACTATTTCTATATGCATG
CGTAGTGTGAATGCTATTTTTTAACTCATTTTACAGTCAATCAATAACCGTTTAGGTTAG
AGAATTTACATGCACGCCTTCTAAACCATGACGGAGGGAGCATTTCAATCCCATTTTTAC
CTATTAGTCCTTATGCTAGGGGTATGCCCCTGCCACTTGTTAGCGCCCATTCTGATACTA
CCTTGGACTTTTTCTTGTGCTTTGCTGGCAATTATTAGATCCCCTAGTGTAGCAGTTCCT
ATATTAGCAGGGGCCAGCATTTCCTTCTCTCTAGATTCCATATTTTATGTATTTTATATG
TTGTACTAGTATTGAAAGCGAACTGCTTGAAATATGAGTATTGGTATCTCCCCGCAAAAA
ATTCAGCATGTGTTTATGTGAATGACCTGTTGCTGTTTCCGTGAAATTATGGAGGTATAA
ATCGAATATACCCTTCAGACTGCTAGCTTTGTAGATTCATCATGCTTCTCTGTAGAAAAT
GTATTCAGGCATAGCTTGTAGGAGTATTTGGTATTTCCCCGCAAAATCAAGCTTGTGTTT
GTGTGGATGACCTGTTGCTGTTTGTGTATTTGTTATCTCCTCGCAATTCATCGTTTGTTT
GTGTGTACTAGTGGTAGGGACGCGCCCTTGGCGCATATCTTAGGGCGCATATCTTAGGCG
GTCCGATGCGCACCTATCTTATTTATAATCCATATGCCCTCGAATATTTCATGCCAACAT
TCTTATATAGCATAGAAACTTCATAGGAAAAGATTTTAACTAAATATAAATATTTTTAGG
ATCCGCAGGCATACATACATCAATAAACATAATAAAGGAAACATTTATGTAGGTGAGGTC
ACCTTTCATGTAATTCCATTGCGCAGCTCCTCAGGCGTTTATCTGCGGTGCAAGGTTTGC
TACTGTCTATTCAGCTAGCTCGTTTGGTCCGCATTATGACATTCATTCATTTGCTCATGG
ATGTGATATTAATGTTATTCATATGTATCAACAAGCCAGATGGATAAGCCCAGAAATACT
AAGATTATACGAGTCCATGTATATAAAAGTGACTGCATTGATGTGTTTGTTTGGAAAACG
AGCATCTATATGAACACAAAGGCAGTAGAGAAATTATGAGGTCAAATCCATTACACCGGT
TGTAGATGTAAGGAAGGTCACCCATTACAATTTGTTCAAAAATAGTGTAGCATGCATGTT
TGTATTTATAGTATAGAAAAGAAGAAATACTGACAACTCTTATTGCTGTGACAACATTGA
ATAGATCAGTCGTTGCTTAAGAGCTTTGCATGTAAGACGTGTCATAGCGACGAGATGGTC
TAAGCCCTCGGTTCATACCGAAGCGTCAACGACTCGGCTTCATTGGTATTGCATGTCTGC
TTCCTCTAAGACAGTTCAGAAAATTTATGAAAAACAACTCAATGTCTTTGTATTAGTGTA
ATAGATTTACTTAGATCTAATTTATTTCATATGTCCTATCAATTGAAGGTAAGCCCACTA
AAATTTTCTAGGTAGAAATATCAGTCCCCTTTGACGTGCGTGGTCTGATGGAGAAGCTAG
CGAGAGGATGACGTTCGTGTGTGGACAGCTTCCTTCATAGCAAAGGAAAAGGTTGCGTGG
AAATATCGCTTCATTTTTCTCTCGCTATCCAGATCGATGCACTGTTCCTAGGCTGCTGAC
CCAACCGATGCTCTGTCCTTCACTATTTTTTGTGACAAAGCAGAGCAGCTAACTATGATA
AATATGCCTCACAGTTTTATGAGGCATATGCAGACTATCACATTGTCCGCTAATAATTAA
GCGGTGTGAGGCGGGCAGCTGAGGTGGCCCGTTAAAAATGTTTGCTCCTGCTAGCCGCAT
CTCGCCCGCTTACAACCTGAGTCAGCCTCAATGCATTGGACATCAGTAATTGTTTTGTGT
GAGACATCCGGACTAAATTCTACGCATACTTGAATCAAAATGATAGTAAGAAAAGAACTG
AACAGAGATGCTCACCTAAATGTATAGATCATTGCAGTGCACCATCGCTCATAAAAGTTT
TTTTTTTGAAAAGGAGGCCTAGCCCCGGCCTATCGCTCATAACAGATGGCATCGAAT