morexGenes - Barley RNA-seq Database

Contig contig_139572
Source Contig contig_139572
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_139572 (5944 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_139572

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7581	1	826 bp	AK357913	Available	Available	None
CDS Structure of MLOC_7581

Contig Sequence (5944 bp)

>contig_139572 5944 assembly3_WGSMorex_rbca.fasta
CCCGCAGGATCTGCACACTTATGGCTCCGTGACGTTTCGGTATGGTTGAGTTAAGTATGT
TGGTGACCGAAGGTTATTCGNNNNNNNNNNNGAGATCCCGGATGTAACGAGGAGCTCTGG
AATGGTCCAAAGGAAAAGATTGATATATGAAAAGTTTCGTGTTGGTCACCGGAAAAAGTT
AGGGCGTCACCGATAGCGTACCAGGGATGTCGGAAGGGTTCGGGATGTCGGAAGGGTTCC
GGGGGTCCACCGGAAGGGGCCACATGGGCGTGAGGGATGCGCACCATCCCCAGGTGGGCT
GGGCACACCTCCCCACCTAAGGCACATGTTGCTGGGCTCGTGGAGGGCCAACCCTAGGAG
GTGACTCCTCCCTAACTTGGGTGGCAAGGCACCCCATGGGCCGCCGCCCCACCCTCTCTT
GGCCACCGCCCCCCTAGGGGAAAACCCTAGGGCGCATCCCTCCTCTCCCTTTCCCCTATA
TATATAGATGGGGAGAGAGGGTTGCAACACACCTATGCCACGGTGCAGCCCTATCTCCCC
CATAGATCAGTTTTCTTTACTAGATCGGTTCCGGTATTGCTTGGCGAAGCCCTGCCGGAA
CAGGTCCACCACCACCGCCGCCATGTTGTCGTGCTGACGAAGAATTCATGTACCTCTCCA
CCCTCGTTTGGTGGATCAAGGAGGTGGAGAACATCATCGACATGTATGTGTGCTGAACGC
GGAGGGGCCATCCGTTCGGCACTAGATCAAGATGGATCGTGATGTGACCGCGGGACAGAT
AGTGATGAGATCGCATGACAGATCATGATGAGGTTGCGTGACGGATCGTTATATATGCTT
CCGTTTAACAATCTACAAAGGTATGTAGATGCACTCTCCCCTTTCATAGATGTTAGTCTC
CATAGATTGATCTTGATGAGTGTAAAATTTTTTTGTTACCCATACAACATTCCCCAACAC
ATTTATCTATTTTCTAGAAAGATTATGCTGGACTTTTGTTCTCTTTCACTTTTCTCGTGG
ACTGTAGGAGTGATAAAATGGTTTCTTTTGTTTCAAGTACTGAGACATTACTTGAGCACA
CAAGCGATAATATTTTGATATAATTTATAGATCATGACACTATTTTTTTAGGCAAAAAGA
TTATCAAGTATTGGTTGAGCCACGATATGCATTTCGTTTCTATGTTTTCATGTCCGTTAA
TGATACGTGCAAAACAAATCACATTAATTGATGGCCAGTCTTCCCCAATTCACGTAGGCT
GGAGAAAAAAACAGTCAAGAGCACTCACTCATTATTTATTAGTCCCTCCCTTTCTAAATA
TAAGACCTTGTAGGGATTGCACTATGTATTACATACAAATGTATATAAACATATTTTAAA
NNNNNNNNNNNNNNNNNNNNNNNNNNATGTAGTCTATAGTGAAATCTCTACAAGGTCTTA
TATTTAGGAACAAAAGGAGTATTTTGTAACAAAATCATTTTTGTTCTAATTTAATGAGAG
CACTCTCCAATTTGGCCGTGTTAATGCTGAAAAGGCAGTGAGACATGTGTTGAATGCAAA
ATATGTTACGAATACTCTTATAAACACACAAGGAAAGAATTGTACAATCCCATGGCCAAT
TCATTGAGGTAATATAGTGTTTGACAAGTGATACTTTTTAGCTTGGGTGTGGTATTTTTC
AGGCTGAATCCTCGCGCTGATGACAAATGAAATAACATATGGTGAACTGAAGTCGATGAA
GGACATACCAATCAATTTCTGAGCCTATATCGAGCACCATGCTTTTGAGATCTCCTAGGA
ATTTGCTACGCTCAGAAAGGGCATTGTCTTGATTATCTTTTCTCCACCTGCCAAATAAAA
TGGTGTCGCGGTGTACTAGTATATAAAAACATATGCAAGTTGGAGAGTATTTCCATATTG
GTCTCCCTAAGAAACTCGGGGAAACTAATCGAGAATGTGTATATGTCCCAATTGATCAAG
AATGGCTTTAGAATTTATTTATTGCTTTTGCTTCGGTACACCTGAAATGACAAGATTTTA
TTCATTAATAAACAAATTATATTGGATTGCCAAAGTTAAACCATATAAGCATAAGAAAGA
TCTTCGATAATACAACTAAAAGCTACATTAAAACTTTAAGTCATTGTCTCTAGCTCCATG
GATTCGTATCTATTTTTTCCTGAGGGTTCCTAGTAAAAATACTTTATAAGAGCATCTACT
GTCGGACGTCTCAAACCTGTCTCATACGTCCCGGCGGGCCGTCTAGGGCATCGACCTGTC
ACGAAATTTTGTACCTAGACGAGCGCCTCAAACGGGTCTCAATTGTCCGGGCTGACCTGT
ACCCCTCATATCCAGCCAGAATATGAAACGGATGCGGAGGCATCCAGGTGCGTCCATCAC
GTCGGACCCGACAACCCGACCCTACCGTAAATTGCACTAAATTCACCCCTCCCTTATAAC
TGCAGGATTAGTTTGCTCTCTCATTTCTTCTTCCTCCTCTGTGTCGTCCATCTCGCAGAT
TCATCGCCGTGCACGCTCCGCAGCCAGTCGTTCTTAGCCTCTGCGCCTCCAAGTTGAGGA
GTCCTCTCTCCTATCCTCGCCTCGACGAACGTCATCGCCGGCCCGGACGCCACCGCGGTA
CGTCTAGCAACTATTTCGCTCCGCCTTGCGCTTGATGTGTTCGGCACATTGTCTGACCGG
ATTTTTTGTGATTTTATTAGAGAAAATGATGGATTCCGATGCTTCATCCGTCAAGGAGTA
TGGACCGACGGAGCTTGATCAAATGATTCAAGACGAGTTCTTCGATTCCTCGGATTCGAC
GAAGAAGTGGACATGACCATACTTATGAACTTTCAATAGATGCATCGAAATCTTCGAGAT
CATCACGGACACGCGCATCTACTCAATGATCTTGTGAAGCATATGTGGACCCACAATGAA
ACCAAAGAGTTGATGCTTGATTGTGCACTTAAAATAAAATTTATGTAAACACTATTTATG
TTCGGTAACAACATTTGTTATTTATGCGCGACAACGACTTTTGTGATCGACATGTATGAA
TTGGCATGAATTTGAAAGTCTGGATTTAAGATATGTAGATGTCGGGAACGAAATGTGAAT
GGTCGTCCGAATGCGTCCACGGACGACGTGTCCGGACGCTTCCGCGGACGTAGAGGGGGC
TGAATTTGTCCACTCGGGATGTAGAAGCTCTAAGGTCAAGTTTGCGCAAGATGAATCAAC
CTTTTAGATTTTGAAAAGCAGTATGAGCCACTCATGCGATAGATGAGAACCTAAGATCGT
TGAATGTGTTGCGATAAAAATACAACACCTGCAAGTCATAATACCGAACCACTGGTTCAT
TGTGGGAAGAAAATGAAGAATACTAACAATAAAATAGGAGGGCCACTGACCGAACTAAAC
TTAACATGACACTTTTCATGCTACCACCGCCTTGGCAGGGTGAAATGTCGAATGATAACC
GACTGGATTTAGGATTAATTCTTCTGTTGGCTTCTAAAATAAGGTGTCCCGCATTCAATT
TATTCTAGAAGGCTAGTCATTTTTTGAGCATACTAATTAAGACAAAACTAATAGGCTTCT
AAAAAGTATTTTTGATTAGGCTTTTTTGGATAAGGAACAACTTGTTTTAGAAGCCAAAAG
AAGCACCAATAAACTGGCCCTTAGATTCCACGAAAAAAGGGACAAAATAATCATATGCAC
CCAATGCGGACATGATGATATCGTGACATGGTTAAAATCATGAGACTTTTATTTATGCTG
ACGTTACCTTTACTATCTGAACATCAATACCATGAGCACATAACTCATATTGAAACAATA
TATCTTAGACCATCCGCTAACAATTACTACTTTATGACTTTTGATGTCAACTGATCATCC
CAAAGAAGGAAGCCTTCCTTCGATAAGATTTGTCTCACGGCTTCTCCGTGCCTCTCGAGG
AATTTTATATTGTTCTTCTGAGTCATTCGGTTCATGGACTCGAACCTGGCTCAAAGCCCA
AAACTTCGTAGAAAAATCTATATGCATTACATTATGAAATGAATCGGACCATGGCCTAGA
AAGCGGATCAAGGCCTAAAAAGGAAGGCGTTTTCATTTCACAACAAGATAAGGTAGCCAG
CCATCTCGGTCGGCTGGCCAGAGGTTCGAAAACCGTTGGGCAATGGGAGGGCACGGCAAC
CTGAACCTCCTCCCTCGCTCCACGACCAGACCCCGCACCGGCACGGTCGGCTCGTCGCCA
TGCCGCTACTCCGTCCACCACCGCAGCGCCAGTAAGGTCGCCGCCGGGAGGAGGAGCGCG
GCGGCGAGTGTCTCCTGCTCCGCCGCCTCCTCCCAGGCGCCGCCGTCGCAGAGCACAATC
AAGGTACTGACTGCTACCACATGGCATGGGGAGCGCTTGGAGTGTCATCTCTGACGCCCC
GCTGGTTCCACTGGCGACGTGCCTTGGGAATTGATTCAGGTGGTCATCGTCGGCGCGACC
AAGGAGATGGGGAGGGCGGCGATCGCGGCGGTGAGCAGGGCGCGGGGGATGGAGCTCGCG
GGCGCCATCGACACCCAGTGCATTGGGATGGATGCTGGAGAGGTGCGTGCTTGCAGCTTG
CGTGCTCACCACTCGCTCCCTTGTGCTATGTCTCTGTTCTTGGTCTGTTGCAGTTCGTGA
GTGCTGTGTGTTGTTTCTTCAGTTAAGCGGCATGGACGAAGCCCTGGAGATCCCGGTGCT
CAATGACTTCACCATGGTTCTCGGCTCCATAGCACAGGTATCGAATATCGATCAGCATCC
TCATCCGTGGAATGATGATTTATCTATCATGTGCTTCTTGTCGGGTGCGTCGTGTTCGGC
GTTTCGCTGACTGCAGATCCTCCTCTTTTCAGACAAGAGCAACTGGTGTGGTTGTTGATT
TCAGCGAACCTTCATCTGTCTATGACAATGTCAAGCAGGTACATTATCCAACGAATTTAT
GTACAAGCTTCATGGCCATGCAGCAGATTCAAGTAGGAATAGCAAACCAACAGTAATACC
TCAAGAAAGCATTTCAGAAATCACAATAATGATGTATATACAGCTATAAATATAATGCCA
TTCAGAAGTAAACCGTTGCCAGTTACAGTACTTGGTAGTACTTCCAGAAAGATGCAAGAT
AAGATATTAATTTATAGAATTTATGCTAAAATGCAAAACATATTGGATTAACCGCTTTTC
AGGTTAAATGATTCTTAGATGGGTGCTTTAGACTCTGATAACCTCACCATGAAAACTTGG
AGGAAATCTAATACACTATCTGACCACCCAAAAAATGGTTCACACGCAGGCAGCAGCATT
TGGCTTAAGCAGTGTTGTATACGTTCCGAAAATCGAGATGGATACGGTAACTGAACTGTC
AGCATTCTGCGACAAGGCAAGCATGGTAAGGCTATTACTGTTCGATTGTTTCTAAAATTC
ACCATGATCAGATTATTCAAACACGGAAACTTATGCCGAGTCCATGACCAGGGTTGCTTG
GTCGCGCCGACACTGTCGATCGGCTCGGTACTCCTTCAACAAGCTGCAATCCAGGCCTCA
TTCCACTACAACAATGTCGAGATAGTTGAATCAAGACCTAACCCATCGGTACGAGGCATT
CCTGACAAAGTTAAACCCTATGCATTCACCACGATATGGATGCCTTCCAATCACTTGCAT
CACAAGACATTAGGTGCAGCTAATATTTTACCACCTTGCAATCACAAGCAAGGAGGGAAA
AGCCCAAAGAAAAACGTTTACAGTACCCATCAAGAAGATAAATAGTTTTGTGTAGATGTG
CTATTAGCAACGTGCAGATTGCTAGACTGATGTTTGGGATTGACAGGACTTGCCATCGCC
AGATGCAATACAGATTGCGAATAACATATCTGATCTTGGTCAGATATACAACCGACAAGA
TATG