| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_139519
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_7555 |
1 |
606 bp |
None |
Available |
Available |
LOC_Os05g05860.1, FRAME:-2, EVALUE:4e-52, 13105.m00623 protein retrotransposon protein, putative, unclassified, expressed |
| MLOC_7554 |
6 |
4241 bp |
MLOC_7554.5 |
Available |
Available |
LOC_Os05g05860.1, FRAME:-1, EVALUE:0.0, 13105.m00623 protein retrotransposon protein, putative, unclassified, expressed |
CDS Structure of MLOC_7555
CDS Structure of MLOC_7554
Contig Sequence (8876 bp)
>contig_139519 8876 assembly3_WGSMorex_rbca.fasta
TGACAAATTCCACATCCTCTTCAATGGTGGTTCCTAGAGGATCAGGATCATACCATATCT
CGGTGGCATGGGTCGCTCTACGTAGCGTAGTGTACTCCAAGGCACACTGGACATTCTTGG
CCAATTCTTTCTTCTTGCTCACCTCAGGCTTTAGGAAAACAGACAGTGATGGGGTCTTTA
TCTTCTTGGCGACGTTAATGATCTCCCGTAACCTGGGGACGCCAAGGGTGACATTCTTAG
CGCTAACACCAGCATAATGGAAAGTATTCAGCGTCATCTGAGTTGCTGGTTCCCCAATGG
ACTGTGCAGCCACGCATCCAATCATTTCACCAGGAGCTACCAAAGACTGGAGGAATCTCG
ATTCGATCTCACCGATGACCCATTCAAAAGATTCCCTTGTGAGCCTGTATTCTTTCAAGA
CCCTCTTGCTAGCAAATGTGCTACGTAGCAGGATATTGAAGAGCAGAGTAGCGTTCTTCT
GAGCCTCGATGCTCATGGCATCGTCTCCTGGGACAACCTTGAGTCTTTCTTGCAGCTTAT
CCATTGCTTCCACAATTTCCATTGGGTGCATGTCAGAAGGTCTTCTCAAATCAATCTTGA
AAGTCTTTTGAGCATTCCAGATAAGCCGCTTGAGGTTGACAGGCATAGGCCATGTAATGT
CGCCAGTTGTGGCAATTTCAGTCCCAAGCTGTAATCTGTCAGCTTCTAATTTCTGAAACT
CTACCTCAAACACAGTTCTGATTTCAGGAGTGGTCTTCAAAACATCAGCATCTTCAGGCA
ACATGTAAGTGGGCCTCCAGTTCTCATCATCCATTTCATAACGAAATACATTGTTAAACT
CTGCCTTTTTCATCCCCAGGGAGTCCAATTTCTGTGGTTCAATCCAAACAGCGTCCATGC
CATCTTCCCCATACAAGAACTGAATGACATCACCCAGCGAGTTTCTCACGGTACCATCAT
ATTTTACCATGATGTCCTCCATAGCCTTCACGAGCCTCCGCTGAATATATCCAGTCTCGG
AAGTTTTCACAGCAGTATCAATCAAACCCTCTCTACCACCCATAGCATGGAAGAAGAATT
CAGTTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACGAACCCACGGCTTTCGGGGCTGT
CGTCGTTTTGCGTGAAGTGGGGCAATGTACGACCAGCAAAACCAAATGGGATCCTCTTGC
CCTCAACATTCTGCTGTCCGACGCAAGCTGTCATCTGCGAAATATTAATGAAACTACCTT
TTGAGCCTGCAGTGACCATAGCTTTCAAATTGTTGCTCTCAGACAAACTCTGCTGAGCAC
TACTCCCAGAAACATCACGAGCCTTGTTAAGAACCTAGCATAGAAAATGGATTGTCAAAA
CAAGTCCACCATAAAAAACTCATGATGGAAGAACCAAACAAGGATATTCAGCAGTAGTAC
CTGATTCACTTTATTTTCAAATGATTCAATCATTGTGCGTCCTGGCTCAGGTTCCAACTT
CTTGTCACGCGCTTGCTGGATAAGCTCATTCACTTCATTTGTAGCATCTTTTATTGTCTC
AGTAATCTTCTCCATAGTAGCTGCATCTGCAATCGTATCCCCGATTCCGATACTGAAACC
ATGTTGCAGAAGCCAGTAGTTAACCAGCCATTGTGTATGACCCAAGAACTTGCGCGCTGC
ATCTGGCCCTACCTCTTCCCTGCAAACAGTTAAACCAAATGATTATTTAGCAGAGGAGAA
CATGTATGCTAAAAAGAGAAACTGCAATGCGACTTTTATAACTTACCAAATAACATGAAT
AAGACTTCCCGTTGATGTTCCAAGTGTTTTTTTGCAAAGTATACCAGACAGAAGCTCTCC
CTTCTCTATCCGGACGATAGTATCACCAGGAGTAATATATCCGCTTTCTTTTTCATCATG
CCAGGCTGAAAATCTAATTAAATTGATTTGCTTGGGGATAATCAAGTTGAAGACCTGTTT
GCCAGTCCAAATCGGCCTTGGTTTCAAAATGGCAGGGGCAGGGACCTTCCCAGCAAAATC
CTCCCACCACATTAAGATGTTCATAAATACATCCTGGAAGATTTTTCACAACATTATTTA
ACTATAAAAAACTAGAGAGACAATACTACTATTGAAGGTGTTGTTTAAGGAGAGTATTAT
TAGTTCACCTTTTCGATGAGAGTGTCCCTTTTGGTAATTTTTCGACAGCCAAGTAGTGTG
TCCTGGACAATGCCCATAACAGGTCTATTCGCTTGAGGTGAGACAATACACTTTGGCACC
ATCATCAACTCTAAAACCTCAGCTCTGGTCTCAAATGACTGAGGAACATGCATATTCATT
TCATCCCCATCAAAATCTGCATTGTATGGCGACGTGACAGACAAGTTGAGGCGGAAAGTT
GAGTAGGGCATGATTTTAATGCGATGCCCCATGATAGACATTTTGTGGAGACTGGGTTGC
CGGTTGAAAAGAACAAAATCTCCATCAATGAGGTGCCTTTCCACCTGAGATCAGAAGTCG
AGCGCAAAACGTGTGAGGCTAAAATAATGGGCAGTTTTTGTGATGTCACCATTAAAACAG
TAGGTATATGCTGCAACAATGGCTACTGTTACTGACCTTGTAACCCAGCTCCAGATGCTG
ATCACTACTTTTCTTCACATAGCGAAGATCCAGCCTCTGGCCATCTTCCCTGATAATGTA
CTTGGCACCTGTCTTTCCTGGGGGAGGGTGAGGCCCATTTTCTACTAGTTCTTTCAATCT
GGTATAATCAGATCAGAATTAGACACGACTTAACAAATATCAATGCAATAACAGTGATTA
CATAAGAATGGCAAATAAACTGCGTACCTCTCGATGTTATATGGAGTAACAGTTTCTGGG
TACGTCATATTCAAAGCAATACTCCATGGCACCCCCAATTCATCAATGTTGATGTTTGGG
TCTGGCGTGATGACGGTCCGAGCTGAGAAATCAACACGCTTCCCCATTAAGTTCCCTCTG
ACCCGGCCTTCTTTTGCTTTCAGCCTGCTGCAGATTGACTTAATAGGCCTTCCAGAACGC
TGAGTGGCCTGAATGTTTTGGAAAAAGATAATCAGGTCAACTGTTTGTCCATTAGGGATT
AATTATTATGAAAAGTGCATTTGTAGACTGACTACTCACCCTTGGTTGCCCTGGAAGATC
ATTGTCGAAGTATGTCGCAATGTGAAACTGCAATAACTGAGCAAACTCTGTTATAATGTG
GGCTGGGGCTCCATTTCTCTCTTGCCTCCTCAGATTCTCATTATGCCGAATTATCATCGC
TAATTGATGAGTCAAATCATCCTGTAGGAATCAGCAAGATAAACAAACAGTGCGTGAAAG
GGTGCCATCTGCCATGTCAACCAACAAACCATTGGAATCGTAGTACTAATTTACTAGTGC
TAGGCTAACCTCGCTTCTGGAGGAAGTGTCCATCATGACAGATGGTCTCACAGGCGGTGG
AGGAATTGGAAAGACTTGCAGTATCATCCAATCAGGACGAGCATATTTAGGGTCCAGGCC
CAACAAGAGACAGTCCTCGTCACTTATACGTTTGAGAACATTAAGAACCTGCCCCAACAA
ATTTGCCATGATGTGGTTAAATAAAAAAAATTCTTATAACCTAGTAGTATAGCAAATTGA
GTAATAGTAAAGATAATAATATAAATACCCTCTCGGCAGAGAGAATTTGCTTTCGCTCCA
CTGGTTCAGGGAGTTGATCTTGATCGCCATTCTTCTTGTTTGTTGTTTTAAACTCTGCAA
CCATCTTCATACCATCAACCGTGATCTTTGGCTGCTGAGCACCACAGCCACCTTTTTTCT
TCACTGGCTCATCGGTGTCCATCTGAGCATGACCCTCGAGATCATCCTCACCCGCAGCAC
AAACCTTTTTTCCCTTGCAAGCCTCCTGTATTTTTCGTAATCTATTTTTTGGGTTCTTGA
TTCTCAGAGCCTGCTTGAACTTGTTATCCTTCTGCAAGAGATATCACTGACGGGTAAATA
ACGTATGCCAAGATACAAGGGAGGCAACAACCATATATAGACGGCCCGCCCTATGACATT
GCTTGTAATTATCCTCCATGGTTCTGATTATTTTATTTAACAAAGACAATAACGGTGCCA
TCAATGCATTCTTCTTTTGTTCTACCAATAGCATGTTGAGTGAACAGGTGCAGAACTGGA
CAAACATAAATACAGCTAGTGAATGGTGAGAACTAAGATTGTTATGATTTCAGTTTAGCA
ACCAACAATTAACCAAGTACAGTACTCCCTCTGTCCCAAAATAACTGTCTCAAACTTAGT
ATAAATTTGTACTAGAGCTAATACAAAGTTGAGACNNNTATTTTGAGACGGAGGGAGTAT
AAATTAATGTGCAGGTGGTATGTCTTAAAAGGAAAGGAGACCTCATCATCCTCATCGGCG
AGGATCTTGGAGCAGTTGAAGCAGACGCAGCGCATGATGGAGAGGACGGTCTTGATGAAG
CCGATGTGGAACATGGGCTTTGCGAGCTCGAGGTGGCCGAAGTGGCCCGGGCACTCGGCC
ATCCCAGCCATGCATGTCTCGCACTTGGTCCTCCGGTCAATGGTGCCCAGGCGAGGGTCG
CTCAAGCCACCAGGCTTGGGCTTCCCCTTCTCCATGGTCTCTGCATGCTCTATCACCGCC
ACTGACATTTGTCTCTGCAAACAAAGCAGAGCAACACGTACAAAATCCATCAGATTCCAT
CCTAACATTGATGTCACTCCATCATTACGGTCAATGGTCATTTATGTGAAACCAATAATA
TACTCCCTTCGTTCTAAAATAGAAGTTCCTTATGTCCCAAATTATATGCTTATCAAATTC
TACCGAAGTCAAACTTTGTCAACTTTGACCAAGTTCATAGAAATATTTTTTATATGTCAA
AAAAAGGAACATAATTTGGTACGGTATATACTGTATTTGGTAAGATACAAATAATTTTCT
CTATAAACTTGGTCGAATTTTGTGAAGCCGGCTTCCTATATTATGGGACAAAGTGTGCAT
TGTTTTTTCAAGAAGTATTTTTTTTCTATGTTGGAATGAGTTTGTAGAAAAATATCATGA
GTCATTTATTCTACTGATTTGTTCTCTCTATAAGTTTGGTCATGGTTAGAAATTTTTGGT
CAAATCATTGTACTACTTGATATTTTGAAACCGTGGGAGTAAATCGTACCGTGAAACCTT
GCAAAAAACAACTCGAAAAAAAACCCGCAAAACAAAACTGCGCAAACTGAACACTTGCAA
ACAAAACTGTGCAAACTGAAGACTTAGAAAAGGCTATGCAAACCGCTGACAAACCGCCAA
GCTCAGAGTTACCCGAAGAGCCCTCATCAGCAGGTGATAACAATATTTGACACACGGGCC
GGCCGGGTACAACTTGTGACTCGAGCATTATCAATTCCGGGCGCTGGATCAGCAAAACGT
GCACGGACGACTCAACCAAACCAACAACCAGTGATTATAGATATTGTTCGAATTAACCCT
TGGCAAGTCAGGGTTTTTCAAAGTTTTGAGCTTGGTATAAGTTGGAATTAATTAATGAAT
CGTTCAACTTGGACTTGTATGTTGTCAGGCAGATGGATGGATCAAACTCGGCCAGTCAGT
TGGCTAGCTAGCTACGAATCGAAGCTAGCAACAACCAGCAGCAGCAAGCAGGGCGGCGGG
AGGCATTACGATCTCGTCGGGGCTGAGGACGCCGAACTGCACCAGCTGCACCTTGGCCAC
CTCCGCCGGCGAGTAGGCGAACCGCGCGTCCATCGCCGCTCGCGCGCCCCCCCTCAACCT
TTTTTTTACTTCTTCGATGGGGGCTAAAGTCGATGGATCGATCTCGCCGAGACGATCCGA
TCTCCGTTTGAGGAAGAGGAAGGGGGGAGGGGAGGGGTGGGTTGGGGCTTTATTTATAGG
CGTAGCGTGCGCCGGACGGGCTAGCGTGGGCCGCAGGGCGCGTGGACTCCTCCTCCCGGA
GGCGGGTTGGTGACGGGGTAGGAAGGAAGGAAGGAAAGGCGGTGCAAGCGCGAACCGCCA
ATCGCTCTCGGAGAGCGGCCGTGTGATTGTGAAGATCACCTATAAGCCCGCTTGGATTAG
AAATTTTTAACATCGTGCAACGAGTGAGTTGCTCGAAAACTAGTTTAATTTTTCAACCCG
GTACGGACGCAAGCCGCAAGCGTTTATGTACACGCGCATACACTCATTCTTACGAGCGCA
CACATGCATATCCTATCTTTATGAAATCCTTCGAAAGACTGAGCCGACATGTCATTTTAA
GATTTTATAAAGTCAACATAGACGCCTCGTGTCGACGAAAACGTTCCGCCACCAGAAACA
CCTGCTCCATTACCTCCTTCACCAACCCTTCACAAAATACCATTTCACATAGGATCAACT
TTTGCCAATTGCGAAATCAAGTACGAAAACCCTTCAGTAGCCAATCCTTTTTTTCCCAGC
GATGCAGTTCGCTTGGAACATGGCACAAGGTGTGACGTTCCGAACGGTGGAGGACAATCT
GTTTGTTTTTCCAGTTTTCTGCCCTGGCAACTCGTAGAAGCTCTTCTCGTGGCACACTCC
CCAAACAAGCACCATGGGGGAGCTACAGGCCCAAAACCCTTCGACCCTTCTTTCTATATG
GGGGTGCCCAGGGCCGAAGTGTTTGGCCTTTACTTCAACGCGCATCACCGAAAATCATGA
AATAAATAAAAGATAAATGCGAGCATCATGACTTGAATTTTGATGGAACGGGGATACCAC
TGTCCTCCTAACCATCCAAACACATGTTGGTTCATGCTCGAAAATTAGTTGGAATGTGGC
CCGAGGGGAGAGGGCACTTTTCTCGGGGAGGAGCGCCCTACCGCACCATGTGGTGTGCTC
GAACGCCGCCACATGTTGCACGCCGAGCATTTTTTGTAGTTCTATGTTTTGTTTTTGTTT
TCTTGGTTTATGTCTGAGAAGAGCGCGTGCTGCGGCGTGAAACATGGTTGTTTTTCAGCA
TGAAATATTGTTGTGCTTCTTAAGGAATCTTAAGTGCAAGGCATATAGACATATAGTTGC
ATATATTTTCGTGTGAATGGACGTGCTTCCGTGTGAAACACATTAGTGGTTCACCCGCAT
GGAAAGTCATAGTTGTGCTTCCTCGGAAAGCATAAATAGTTTGTTAACAACACAATTTAG
TTCACATTAGAATCGAGTAAAATGCATTGTTGATCCTTAAACTTGGTGGCAGTGTTCAAA
ACGGTCCTAAAACTTGCGAAGCGCCTCAATACGGTTCGAAAATTGCCAATACTGCTTCTC
TATGGTCCTTGAACTTCTCACGACGGTCTCGAAAATAATTGCCAATACTGCTTCTCTATG
GTCCTTGAACTTGTCACGATGGTCCTGGGCTACGTATCCGCATACACAACATGCACACCG
TAGCATACCACAGTCACCACGTCAATGGAGGGCCCGTAGTGAGAAGATTTGGACGTTCCC
GATCGCACCCCGGAGATCCTCGCCGTCGACTACAACCACCTCGATGGCCGAGCGATGGCG
CCGGCGGCCGAGTTGGACGACCGACGCGACACTCAAGAGGACCACGAGAGCAGAGAGCAG
GATGACCGTGGCGAGGGGAGGGGCACGCTCCGCCATGCACTCGCGGTCACTGGTGTTCCC
GGAGCACCGGGAGAGGCAAAGCACTGGATACCCTCAATGTCGCTCATGTGCAGCGCCGTC
TACGGCGCACGTCTGAAGAATTGTCAAAAGAGATGTTGTGCATACAACAGCTGGAGGTCG
CTGGATTAGCTGGATGTGTGAGACATCAAGCATGCCGAGCCACTTGAGCTCGGTGAACTC
CTTCGGCATCGCACCTAACAGGCCATTGCAGCTCAGGTCAAGATCAATCTGACCTGGAAT
CGTGCTGATGCACGCTGGTGTCCCGTTGGACAACAAGTTGTCACCGAGGTCCAGTAGCTG
AAGCCGTGCACACGAGCCGATCTCCGGAGGTATCTGACCGGAGAGCCGGTTGCCGCCAAG
AAAGACCTTGGCGAGCGAACCGAACATGCCCACCGCCGAGGCATACGCAAGTCTCAGCGA
GTTGCACACATGCATGTACGCACATAAAATTGATCATGCTGCTAGCTAGCTTTGCACGTA
TGACGTACCGTACGTGTTCTAGGGTTCGGATCTACTAGCATTCTAAAGCTAAAAGACGGG
ATGTGGCGGTGATGCCGTTCATGGAGAGTCCTCGTGCACTTGCCCAGCTCCAGCGGGATG
ACGCCGACAAAATTGTTCTGCCACGCGCCGAGATGGAGCTGGACAGCGCATTGTCGTCCA
GGTAGATGATTAGCTCGAGCAACGTCCGGAGGTTGCTAATAGCGTTCGGGATGGAGCCCT
CGAGGTGGTTGGAGTTGACGGCAGGCTCTCCGGGTGCGATTGGGGAATGAGCTAGGTATT
TTGAGTAGGAACGACCAAATCTTTTGACATCGGGCCCTTTGCTGATGTCGCGACTACGGT
ACGCTGGGTTATACGCAGCACATGCCCGGATACATAGACCAGGACCAGCATGGCAGGTTC
AAGGACCGTATTGTAGCAGGATTGGCAAGTTTCAGGACTCTATTGGGACACTTTGCAAGT
TTCAGGACCATTCTAGACACTTCCACCAAGTTTAGGGGCCAATGATGCATTTGACTCCAC
TAGAAACACAAGTTACTACTAGTTGATAGTTCACACGGGAAGCACAAGCTACTACCAGTT
CAATGCACATATTTGTTTTAAAAAAAAGTTTCTTGAAACATATTAACATTTGTAGTTTTG
AAGGTCACCGAAAAACACACTAGTAGAAAAAGGGCCTTTGGCCTGGACCCTTTAGT
