morexGenes - Barley RNA-seq Database

Contig contig_139465
Source Contig contig_139465
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_139465 (7193 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_139465

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7531	1	464 bp	MLOC_7531.1	Not available	Available	None
MLOC_7532	1	3155 bp	MLOC_7532.1	Available	Available	LOC_Os07g38760.1, FRAME:-3, EVALUE:0.0, 13107.m04011 protein HEAT repeat family protein, putative, expressed
CDS Structure of MLOC_7531

CDS Structure of MLOC_7532

Contig Sequence (7193 bp)

>contig_139465 7193 assembly3_WGSMorex_rbca.fasta
CATGGCCCGAGGCGGGCTGCGTGCCTAGTACGGGCCCGTTTAAGTCGTGTCGTGTCCGGC
CCATTACGTGTCGTGCCGGCGGGCTCACGGGCCGACCTGTTTAGCCCAGCCCGTTTGGCC
AGCTACGGTTGCCATAGAGTATAACATATATTTATATCAAGCTGATATCAACTACAACCA
GTCTGTGAAACAACACGATATGAAGGGCCGGTGGAGACATTAAAGACGCACACTGTTTGC
CATTGCCTAGGGATATTTTCGTGTCGATAATAGTTTGACATCCATCTGCTAGTGGCTTCC
TCTACACATGTTTGACATTTTTGAACTATTAATGCTGGCATTCGTTTGCCCTCCATTCTA
GGACGTGGTGTAGTGAAGATCGCTTCAAGTACACCATTTGCTTGTTTCATTTGTTGGTCC
TTCATATGCACAGTCAACTTGTCTCTGAATCAAGCAACACGATGACCCTCTCTTGTTGCC
TTGTCTCACCCTCACTTCACCAAAATGTTGAGTTGGCCTAAGCGTAGTGTGTTACGCACT
ATTGTCAAGGTTTTACCTAATATTTCGCAGACTGGCACGTTTCATTTAACATCATCAGCA
AGATAATTTAGAGCGATTATAAGGAAGATTATCCATGTGTGATACCACTGTTTACAACTC
GAGAAGAACATAAACTTTTATCAGTCTTTCAGTTTACCCTACAAATATTAGATGGTTAAG
GTTGAAGCAACTAGGCTTGCTGACAAGAGCTCTTATCTAGTCTCATCAGCAACAAAAGAG
ACGCCAGTGCTAGTCTAATGGGGCAGGTCCTTGTCATCCGCACCCAAAAATCAACATTGC
GTCTCAGGCATGGAGCAAAACGATGGACCATTTCAATTTAAAAGTCGTGCTACGCTCATG
CTATGAAAAAGGTGAATTTTGTCAAGTTGCGCAGCAGCCACGCTGCCTATATTCCAAGTC
CTCTCGTTGATTGAGCGTATAAGACTGGTGCACCCATATTTTATGAGCCCAGAGAAGGCT
CCAAGGAGGCCCATCCTAATGACGGGTTGTTTTATAGCGGCGGAGATGCTTTGTTTGTCG
CTGTCAATGTGCGTCTCCTTGTCCAGCCCCGTAGATTATCCGCGCGGACGAGACAAAATA
CCACTTTTTGGGCAGCGCAAAAAGTCAGGAGGAGCATCTTCTCGCATCTTTTGGTGTAGA
TTCGATTCAGATTTGTCTTGTGCTGAAACTGAGAGGAGGCCACGAAGGACAGGAGTGGAT
GGAGCCATGGAGGGGGGAGTGGCGTGCTCGGGGGAGCTTATTATCTCAGACGAACCGTTC
AAATGCAGTTCCTGATGTCAGGTCCTGATACAGGAAGATTATCTGAAAGGTGCCCTGGGT
ATTTCTTTTTGCCGATTCCTCTCTTCTCCGTTGGTGCATGCACCTGGATTCTGAATATCG
CTTCAACCATTAGTTGTTTCCAAATGTTTAAGACCGTCTAGACACCAAACAAGGTTACTC
GCACGACTGTATTTGGTTTGGTATTTTATTCATTTTGGTAATGGTTACCTGGATTTTTGG
GAAGTTTGGCAGGCAGGAACACAATCCGGCATAACATAGAGGGGAGCTCAGTATACTGAA
TTATACAATCAAGCAGTGGAAATGCACACACCACTAGAGGTCAAAACAAACTAAAATACC
CCTTTAAATAATACATGTGTTGTATCATCCAATACTGCGGTTTTCGAATCCAAACAGAGC
CTTAGCTTAGCAAGTTAATGCAGCTAGTTAACTGTTTTCTTTATAGCTTGCGCAATATGA
GAGTAATATTAAGAATCTTGACTAAAAGAAGAAAATATCTAAGCAACACAATCATCACTA
ATATAGAGCATACGAGGATCATCACACAAAAACATAACAATCTCATTACCAAAACTGATG
CACCATTGTTCAACTCAACCGACAACAATTTTCGCCATTTCCCTTACATCTTTGACGCAG
CAAGCCCCAAAATCATATTTGAATACAAGATAATATACACTCTACATCAAAAACCATATG
GAATGGCGACCACCAATCCCTTGAAGCGACCAATGCATGCACAAATGAACTCCCCCAGAA
TAAGATTCAACACAAAAAATTGGTTGACAGTACCAATGACGAATTATGGAAAGAAAAGCA
AGCCTCAACCTTGCAGCCACAAAACAGAAGAGAACTATGTGGATAGGATGGACTGTAGCA
TGAGCTGCTGCTGTGGTTGCAAGGTGGAAAATGTTGACGCAAGAAAATCAGGTGGCAGTG
TCTGCTGAAACCGCTTCAGAACATTGATCATCCGGGTGGTAGTTTCATCTGTTGCAAGCT
CCTTTCCATTGCACAGAACCTACATAAAACAAAATGAAGTAACCAATCATTTACTAAATT
CTTCATACAAAACTAAGATTAAATATCAAAGATGTACTGCTGGATAAAAAAGGTATGCCG
CTACCATGCATGGCTAAAAGCTGAGACCTAGGCCCAAACTTAAAAAATAAATCAATCACA
TGAATTTATACATCAAAACGCACGTACTGTTTCATGGTCATTATTTCATTCAGCCATACT
ACAACGCCCCCTAACTGGAGATGACTGACTAACAGAGCAAGCACATAATTCAAAATTACC
TCAGCAAAAATAGAAACTATTTTAGGAAGATACTGACTGTGAGGTCCAAGAACCAGTGCA
TCCGATCTGCACACGAAAAACAGATTATATAAAATGTAAGAAATATTCTACTGTTCCTGC
CATGCTAACACTAAAGAGCAAATACCTCTCCACCATTGAACAAAGCTGATCATGCACGAC
TTTTGCTTCAATCTTGTCATCTTTTATAGGCAAGCAGCCAAGCCATGCTGGAATGACCTG
AGAAGCATAATTGATTCAATTTAAACGACAAAAAAATAGTACACATTCACAGCAGAAGTA
GAGGTATCTCAGTTTGATTTTGAATTCGATAGCTAGGAAAAAAATCATCGGAATCACAAA
CACATATCCTCGTTCATTCACTTGACAATTCACATGCTGTTGTGCATGGAATGTACATCA
TCAAATATAACATAAAGATAGCAAAACAAAAATATGTCTCTTTGGTTCAAAAGGATATCA
AAGAAATTTTGGAGGATTACATTCCGTATGATTTTTTATGTACAGAGCTTGTTTGGTTTG
TAGGACTGAAAATCATATGGTTTTCCTAAGATCTACTACGTCCGTTCCTAAATATAAGTC
TTTTTAGAGATTCCACTATGTACTACTCCCTCCGTTCCTAAATATAAGACCTTTTAGACA
TTTTACTATGGACTACATACGGAGCAAAATGAGTGAATCTATACTTTAAAATGTGTCTAT
ATACATCCGTATGTAGTTCATAATGGAAACTCTAAAAGGTCTTATATTTAGGAACAGAGG
GAGTACATACGAAGCAAAATGACTGAATCTACAGTCTAAAGTATGTATATACATCCGTAT
GTAATCTGTAGTGGAACTTCTAAAAAGACATATATTTAGGAACGGAGGGAGTACCTACTT
TGCATGCAAATTTCAAAGGTATTTTTCCACTGACACCAACCTCATTGAAATTTCCCTAGT
TCAAATGACAACTATGGCATACACCTAATCCTTAATAAAAATTCTTGTGATTTTTCAGTG
CAGCAACAAAAACTTTTGATTACAAATTCCTGTAGGGTTAAACATGCCTTATACCGAATT
CGAACGTTTTTTTATTCCCGCATTTTCGAAATATTACAAACCAAAGAGGTTCTCAGAACG
TTTAGTCTCTTGACAGAACCTGTAAGTGAGATTTAAGCATATACCTGAGCCGCATCAATC
CCATCGCGATGAAATTGACATATTTTCCCAAGTGCTGAAACAGCATTATCATATGCCATA
ATATTATCTGCATGTTGTGCTTCTGGATGTCTGATAACGTTGTTCAGCTTTGACAGGGCC
TCTGAAGTTTAAAAGTATCATTGTGTTAAATGGAATGGCTCAAGATGCTTGACAGGGCCA
TAAGATTCAAAACTTACCTCCAACTAAAGGACGGAAAGTATGGCCACCAAACTCAGCACA
TACTCCCAGGCCGTAAACAGCAGCCTAAAATGAAGATGATTTTATTCACTACATCAGTGC
CATGTGAGAAAAATATATCAATTAGGAAAAAAAATAAACTAAGACAGCATGAGAACACAA
ATACATACCTGCCGAACATCTGAGTTATCATCATTGGATGCCTCCAACAGAAAAGGAACA
TAGGTATCATAATACCTGCTCAACGAAAAGACATGGTTCAGTTACAATTACAACTCAGTT
TACAAATAACTGATGTTGAAGAGAAACATACTTCAGAGCAGACTCACGACATTGCTCTGC
AATGTCGTCAAAAATGCAGATAGCTATCCTTCTCTCCTCAGCTGTCTTGTCCTTTCCCTG
CAATTTAAAGATGAGATAAAAATATTAAATAAGATACCAAGATATAGTGCAGACATTCCA
ACAGGAATATGGCTAATACAACATGGTAATGATCTTAAACATTATTCTTTGGCACCATAT
AAATGAAGAGACCAAGGAGAGAGTCATTCACACTTCAAGGCTAAAAAAATTGCATATATC
CAAGCTAACAGTGCTTTACATACTATTTTGGCTGTCATCTTATTAGTTCCAAAGTTCTCA
GAAATGAAATGGTTCGGTCAAAGAGAAGGCATGTGGTTGTCTTCCACAGTTCTTCCCATA
CACCAATGAGACATAGCCCCACACAAATATGGAAAAATTATCAACACGAGATTTGATCCC
TACATATTGTGCGACCTCAGAGGAATTATGTGTGCTAATTGGATTAAATGAGAGAAGTAA
CACAGAATCAGTTGTAATTCGAAAAATATTAGAAACTGAACTCCAAACAAATGTGTGGCC
ACAACACTATGCCCAAACAAGGCGGGATTAAGTCAACTTACCAGCATTGGTGTAACGTAC
ACAGATAGCTCATCAAAGAACGGCAAGAAAGAAGCTTTAAAGGTTTTAATCAAAGTTCCC
AGGCACTCGCCGACCTGAATGTAAATAAATAGAAAATGTTAGATAAGAAAATTGCAGAAC
AAAAGCAATTCACAGACATGTCAAGAATCATAACCTGATCAAACACTTCCTCCTCCTGCT
CATTCTCTTCTTTGAGTAGTTCTCCTTCATCAGCATCAAAATCTTCGGCTTTTGTTCTCT
CTGATCTGTCTCTTTTCCTGGTTGCACTGGCTATAATAACATTCTTAATCTCATCCGAAA
TAGCCCTTACTTGATTCTCATCAAGAAGACATCCAGAAAGCTGTTCAGTGAGAGTAAGGT
AAGTGAGAAATCTGGTAAAGCAAACTCTCTAGAAGTCAAGGAACAATAAAAAGTGTGCCA
TACAGAGCTGACTAACTAGGTAACATGGTACAGATGATGGCTCTCAAGTGTTGATGCACT
CAAAAGAATCTAGCTTTGAACACAATAAATAAGAAAATTTAACTTATCTCTTGCTACACG
CTAATCCATAAACAGTGAAAGTACCTAGGAACTTTTATACAAATGGTGTGTTCGGCTTGT
CGTATGAAGTTTTTCTTACAAAAGAAGCAAATGGCATTGCGAACACTAACAACTTTCACC
AATATGTAATATGAAGTTATATATAAGTTAATATAGGCTCAAATATGCCAATCTGTCAAT
CACATTAAGTAGCGTCGAGCATAAATTTGGTTGCCACAACAACACAATAGACATACAGAA
TGTAAGGGTGGTTGTCCAAACTGAGATGAACATTTTAGTATAAACCTAGGGTGTGTTTGG
TTCCTGTCACGAAGTGGAACGGCACGTGTCCGTTCCGTTCCTAGGGCCCATTCTCGTGTT
TGGTTGAACTAAGGAACTGGAACCCACTCATTCCTGGAATGGCATATTCGTTGTTTATGC
CTTCCACACGGTCTCTCCAAATCAAGCGGACCACACGAAACCGCTCCTCTTACTCCCACT
ACTGCATCTCATGTTCCCTCCTTCCCTTCCTCCCGCGACCTCCCCAGGAGCCGCCGCCAT
CGGAAGCACACGCCTCCAACGCTTCCAGGAGCACTCGCCGCCTCGTCCAGACCGCCCCGC
TGCAGCCTGCAGGCGCCGACTTCAACGCGCTGCGTGCCCCCGTCGATGAGTCTCCAAGGC
GGCCACGGAGGCCATGGAGGCCATGGTGTGGGTCGCGGTGAATGAGCTTGGGCCCGAGCG
GGTGATGGCGAACTGCATCGCGCCAAGCCCCATGACGGGAAGCGCCACACCGTCGCGCTT
GAGTAGCTGCTGCTCCATTGGCCGTTGACCGTGACTGAGCACGCCTGGTTCTTGTGCTGG
TTTTGTTGTTGATCTCGACGATTTGAGTCTGATCTGTTCCTTTTCTGGTTCTCTGCAAGC
ATGCAGCCTTTGATTTGTTCTGCAATCTAATTGATGCATGCATGGATGGATGAGATCCAA
TTGCTCACACTCCTTTGGTTCTCTGTGATTTGGTTCTAACAGAGCATGCTCAAGACTTTA
TTGTATGGATGGATTGATAGATGACCATTTTACTCACCATTTTTTGTTTGACTGAAATCC
AATCCAACTATAAGTGAGATGAACAAACCCATCTCATTCCATCCCTCAAACCAAACATCA
AAATATAACCATTCCATTCCTTTGAATTGCCTCTACCAAACACAAGGATGGAACCGACCC
ATTCTAGTAGAATGGAACCATGACATTCAATTACACTTGGTTCTCAAACCAGACACATCC
CTAGTTAGGGAATTGTGGGGGACTGTAACAATCAAACAGCCCAAGTTGCTACAGTGATGT
TGGACATCACATCAGGCTGTTATATGTTATTTGGGAGCATGCAGAGTCATCAATATGGAA
ATACTACATTCGTTTAGAAAGCTACCTCCATGTTTTTTTTGTGTGTATTAGTCCAGACAT
GCAATGCTACAGTGATGTTGGAGATCACATCAGGCTGTTATATGTTATTTGGGAGCACAC
AGAGTCATCAATATGGAAATACTACATTCGTTTAGAAAGCTACCTCCATGTTTTTTTGTG
TGTATTAGTCCAGACATGCAATGCAAATACACGATTACCGGTTACAATCTAGGACCTAAG
CATACTCACTCTAACATGAACAATTGGCCCGACCCACCAAATACCCCCCCCCC