morexGenes - Barley RNA-seq Database

Contig contig_139442
Source Contig contig_139442
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_139442 (9690 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_139442

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7518	2	1281 bp	MLOC_7518.1	Available	Available	LOC_Os09g23730.1, FRAME:-3, EVALUE:7e-28, 13109.m02246 protein HMG-Y-related protein A, putative, expressed
CDS Structure of MLOC_7518

Contig Sequence (9690 bp)

>contig_139442 9690 assembly3_WGSMorex_rbca.fasta
TTTATGCTACGTTACCCAACATTTAATTACATTGCAAAATGTTGGTTTATATTTGAAAAT
TACTTAATGAATATTTGGAACCCAACCAAGATTTTAGTTTCACTATTTGAAGAAATAATT
TACTTGACTTTATTTTAAATTTGAATTTGGCTTTGATTTTTAGGAAGTGAAAATTTGGCC
TAGTTAAAACTGATGACATGGCACCATTAGTGTGAGGTCATTGTAGCATGACACTCGGGG
TGTTACAAATACTATCCTCGAAGACGTTTGTGATCCCCTATACTTGTGGGACATCAAGAC
TAATTTTTAGCGTCGTTGCCGGGGAGCATAGCTCTATTTACTAGGTTCACTTGGGAGTTA
ATTATCTGCTCCAATTTATATTCATTAAGAATAATGTGAGAGACAATAATACCAAGATCA
CACCCTCTATGACGAAGGGAGGTAAAGAACTGTCAACTAGCTCTACACTTGATTCACCAA
CTATTTTAAGTCAACTTGTGACACCACAACGTGCTATTCAATTTGATATGACACAAGTAA
TAGACACTACTTTTTCTATTAATGACACTCATGATGATGCTTCTACTCTGCTTGATAATA
CTACTATGGCACTTGGTGAAGAGTTAATGATAAAATTGGTCCTTACTTCAAAACTCACAA
AGGCCTAAGACATGGTGATGCTTTATCACCTTTGTTTTTTTATCTTGTTGCGGATAAATA
GTTGTTATTATGGACAAAGAAAATTTTAATGATTTTTTGAAAGGATTTTAAATGTAAAAT
CTAACTAATGCGATTAATATGCTTTAGTATGCTCATGATGTCATGTTTTTTTACTTCAAG
ATGATGTTGGAAGTGCTAAAAACCTCAAGTTCATATTGAATGTTTTTGAGAAAATGTTTG
GACAACTATTAATTTCCATGAGTGAGTTGTTTATTATTGGAAGGCTAATAATAAATTTGA
GGTGTACCGAGAGATTTTTACTTGTCAGCTGGGAGATTTGCATGCAGAGTATTTGGGTAT
GCTTATCTGTGATAATGGAATTAGGAATAAACATTGTATGAGAGTGTAAAATAAAATTAA
AAAATAGGTGGATGTTGGCAAGACAAACTGTTGGGCTCTATTATTGGCAGGATTCGTTTG
GTACCAGTTTGCTAACCAACATGCCTCTTTTTATGATGCATTTTCACCCTCATCCCCCGT
AGGGCGCTTAAGAAAGTTGATTTATTTAGAGATGGAACGGTGTGTTGGGGTGATGAAGAT
AAAAAAATAAAAGTCACTTAGTTAACTACAAGAGCTGTTGTAAAATTAAAGATCATGGGC
GTTGGGGATCCATAATTTGGACATCATGGATAAAGCATTGCTAGGTAAGTGTTTTCAGAA
ACTAGAAACTGAATTTGGGATTTGGCAATTTATTTTGTTGAATAAATATGACCCTAGTGG
GTGTATGTCTAGAGATAATAAAACCCAATGTGGCGGATTCACAATTTTGGACTAGCATTC
TGAAAGTTAAAGAGAATCTTTATCAGTTTTGCAAGAAAGTTTAGAGATAGTCATAATACA
ATATTTTGGGAAGATTGGTGGACAGATGATAAACCTTTAAAATTAGCTTACCCTAGACTA
TATTTTTAAGCTTTGATCATAACATCACTATTGCTAAAGCCTTGTAGAAAGGCTGGGGAT
CGGGTTCAGGAGAACTCTATATGGGGAGTCTCTGGAGCTCTCGAATAGTTTGAAAGTTAG
ATGTAAAGTGGTAGATATTGGATCTGATAAAGATAAAATAAATTGGATGTTAACAATTGA
TGTTTTTTGCCAAGTCTTTATATAGAAAACTAGTTGAATCTAATTGCAATTACCCTCAAT
AGTTTTTATGGAAGGTCAAAGTACCAACTAAGATCAAAAGTTTTTCTTTGGCTTATGGAT
AGAAAAAACATTCTCACCAAAGATACTCTCTTAAGGATAAGATGGGTTGGTAGTAAAATG
TGTACCTTTTCTCGTAAAGAGGAGACAATTGATCATCGGTTCTTCCAATGTGTTCCTGCT
AGTTTGATCTGGAGCTTGCTTAAATGTGCTTTGAGCTTAAATTCTACTCCAACTACACTT
AATGGTTGCTTTGGGAGCTAGATTAATAGTTTACCAAAGAATTAGAAAAGATTAGCATTG
GAGGTGTAGAAATGATGTCATCTTTTAGAGAAAAAAACTTATCAATGACCATATGATCCT
CATAAAGTTGATTTGCTATTGGGTTATTGGATGTGCTTTGCAGATAAAGGAGAAAGCACA
AGGGTGCTAGTGCTAGGGTCAAAACTACTCGACTCACTAGCAAATGAACTGTATAGATCG
TCACAAGGTTGGAGGCATGGGGTCATGAAAATTGGTGGCCAAGTCCTGAAGCTTACAACA
CTCGTGATTACAGGTTCGTTTCTTCCCCTTGTGAGGAGTTGTCGACTTCCCTCTTCTAGC
AATCTTTCTTGTTTTTTCTTTTGTCATTGGTGTAGTTATGCACCTATTTATACTAGCTTG
TTTAGTTAGTTCCTCAGCCCCTTCATGATGGGATTGTGGAAGAAGTTTGGTTGTGTTCAT
TAGTTGTTCTAGTTCTTGTGGTGCTGGAGACTGCTTATATGTAAGTAGCTCCTTCTTTAG
GAGATTGGTGATTTGCTCGCTTTGCTAGGTGCTTGGAGCACTTCCTTGATCCTTCCTAGA
AGATCAGCAAAAAAATCATGGTAGTCGTTTTTATTAGGCCTTGGACCTTATGGTTTCTAT
TAATAGACATCAAAGGGGGTGGACCCTCTTTTAATAATAATAAAGTATTTGGGTTGGTGG
GTTGGTATATTAACTAATTCCCGAGAAAAATATAGGTTGTAGCGAAAAAATAAGAACCTA
GTTTTAGGTAAGCTGTTTGAGCCATTTTTGGGCAAAAAATCCTACATTTTCACTTTGTAG
GTTTTGGCCCATTTTTAGGCTCGTCATTGGAGATGACTTGAGGGCATCAATTTTTAAGAG
CTTTTAGGGATTTCACAAACACACATAAAGTTTAGAGGGTCTAAAAGTATAGTAATAAGG
GTCAAATAATCTCCTTTTGGAAATTTCCTTCAAGTGCCAACCTGAAAGAAACTTCTTACA
CGCTCATAACTTTATAAGGACGGGAAGGTGTTCGGGTGCCGACATGTGGGCAAGAGTGGT
AGGCCGAGGTAGAATTGAGGGAAAGAGATGCTAGAGCATCCTAGGGTGGTTGCGATCACG
TTGAAGGCATGAATATCGGCCTCAAGGGGGGCAAAATGTGATCACACAGTTACTAATTTG
GTCATCAAGCAAAAAGACCTTGTCCAAGGAGGAGGTGAAAAAACATAGGTTAAAATTGTT
CACGCCAGGATTTAGCAGATGGTTCATACATAATAAGGTCAGTCAAAAAGCGAAGGGGTT
CGCTTGCTTCGTAGAGATCAAATCTCAACTGCAGGAAGAAACTAAGCCAAGGAGACTTAC
CAAAAGAATCTTCTAGGATGATGGTTGTAATTGTGAAGGTATTAATCAATGACATTGGAT
TCAATACCTTGGTACATTTTCTTTTCACATCGAGACAAAAATCCAAGCCAAGGTAAAATC
TGGTATTTTCCTCACCGTCAACGATATCACAACACTTCACCATGGTTCTCCAGATAGGTT
TTTGGAGTGCAGATCACCATTCGTAACAAAAAATCAAGATCTTGGCAGAAATGGAGGCCA
AAAGAGGGACAATCACCATCGTGCGTGTGCCTAGAGAGAGGAAAACGAGGGAACAACGCA
TCACAGTTCATCGACAACACAAGAACACTATGCAATCAATAAACAAGAACATCACCATCA
AAACCAAGTGCACCATGCCAACATCAAAAACACAATTAACTGCAACATTGCATCATCACA
TGCATCTGTCGACGACTATATGCAAACTCGTATCCGGATTCTGCAAGAAAAGTTTGGGAG
ATGGTCATAATACAAGATTTTGGGAAGATTGATTGATATATGACGAGCCTCTAAAATTAG
CTTACCACAACCTATATTTGTTAAGCTTTGATCATAACATTGTTGTTGCTAAAGCCTTGC
ACAAAGTTGGGGGAGGTCATATTCAGGAGAACTCTATATGACGAGTTTCTTGAGTTATCG
AATAGTTTGAAACTTAGATGTGAAGAGGTAGAAATGGAATCTTCAAAGACTTTGCGGCTA
CTATTTATTGGAGATGCTTTGATTGCATCCATTTCTAAGACCTTTTTCGGGATTTGACAA
ACATGCATAAAGTTAGAGGGTCTAATAGTGCAATAATAAGGATCAAACCATCACCTTTGG
AAAGTTGCTTCAAGCGTCAACCCAAGAGAAATTTCTTACAGGTTTCCAAAAAGAAAGAGA
ACTTGTTCGGGTGCAGGCGTGTGGGTGAGGGTGGACCAAGGTAGATTTGAGGGAAAGAAG
TGGTGCGACATCCTAGGGAAGTTGCATTCGTGTCAAAGATTTAGATATTAACCTAGAAAG
GGGCAAAAAGTAATCACACAATTACTAATTTGGTCACCAAGCCCCAAAAAAAGACCATGT
CCAAGAAGAGGTGAAAAAACGATGGGGCAAAGTCGTCTAAGCCGAGACTCAACAAACGGT
TCATACAGAATAAGGTAAGAAAATGGAAGGGGGTCGCTAGCATTGTAGAGTTCTAAGAGA
TCGAATCCCAGTTGCACCAAGAAACGGAGCCGAGGAGATAGCCCAAAAATCTTCTAGGAT
GATGACTTTGTAATTGTGAAGGCATTAATCAAAGACATTGGTTCCTATAACCAAGATACA
TTTTACTTGCCGTCAAGAACGTAACGACGCTTCAGCCTGGTTTTCTGGATGCGTTTGTGG
AGAGCAGATACGACAATAATGATTTTTTTAACACGATTCCTTAGGGCCCGATCCATTAAA
AAATAGAAGAGAGTTTTTCGGTTAATTAATGAAAACCCGAACGAAAACCGTTAGAACACG
CCCCCCAACAGCGCACCATCAACACACCGACCCTCGGTGCCGCGCATCCAACGAGCCGCC
GGGTCCGTCACTCGAGCAACCCGTAACCGACACCTTACAACAAAAACCGAAGCTGCCGCT
TTAGCATCCACACCGACCCCGTGGCCGCGCACCAGGAGAGCCGTTTGCCCTACTGCCCAA
GCAACCGGAGTCAACACCCTACATCTCTCTCAGGAGTCGCCACTCCGACGCATAGGCCGT
GACCATACACGCCGACCCCGAGGTCGCGCACCAGGCTAGCCGTAAGCTTCATCATCCGAG
CAACCAAAACCGACACCACACAACCAAATCCGAAGCCGCCATTCTGTCATCCACGCCGAC
CCCAAGGTCGCACACCAGGCTAGCGAATGACGTCGTCACCCACGTGACCAATGCCGGCAA
CCCTCCATGATGACTAATTCAGAATTGTCGTTCTAAGCTCCACGGCGGCCCCGAGGCCGC
GCACCAACCGAGCCGATGACAGTCACAGGCCAAGACCACTCCAAAACGAAGCCTCCAAGA
AGAAACGTTGTCATCATCCATTCCAGGAATCTGGAATAGGGGTTTCCCCTGGAGTGCGAG
AGAAGAGGTCTTAGGCCCTCGAACAAAGACGCCTCCAAGGAGATGAGCGACGCCCACAGG
CATCGTCGTCGTCGGCTCCGACCAAGGACAGAGCAAGGCTTTCACCCCGAGCAACCAAAA
GAAGTCTTTCCCTCGAATTGGCATATGAGAGCCGCCGCTCGCCTGAACCACCACCCACCA
CCAAAGCCCGGAGCCATCGATGAGAACCGCCCCGCCATTGCCGCCTGCACCACGTGGAGC
CGCTGATTGGCAACCCCATCACCATCGCACGAGCCAGAACCAGCCACGTCTGGCCAGATC
CGACGCCCCGCACCACAGCCAACCCACCGGCTGGCACCAAGTGTCCCTGGCAAGACTGAG
GACCCACTCACTGCGGCAAAGTCACGATGCACCCGAGCTCCAGTCGTGGCACTGCCCACA
CAACCAGCACGACCGCCATCGCGAAGAAGAGATCCGAGGCTGCCGCCCCGACATCCGACC
ACTACCCGCTCGCCAGATCCGCCTCGCAGGAGCGTCACCCATGCCCCCGCTGAGCAGCAG
CACAACCCATCGGTCCAGCCCGAGGGGAACGACAACCGCATCCACCACCTGCGCCAACTG
CATGAGCCACCATCGAAGCTACACCGGATTTGCAGTCAACAGACCCTACAGCTCCGCCCC
GCCACCAGCACACCTGCCGGCATGCCTCACCACGCCGGAACCTAGTTGGACCACCCCCAG
CCCACGTCGCCTCAGCCCTTGACCCCTGTCGTCCGAATCTAGAGAGAAATCACCAACAAC
TTCCAGCCTCAAGATCTCCACGAACAGGCCCGCACCATCCATCCTCACGCAGCCGTCGCC
ACGCGGACGCACCTCCCACACGCCGCCCGAATCGCCGTCGTGCCATCTCGCACGAACAGC
GTGCTCCTCGCCAGGGACCCGCGTCCCGAGCCGCGGTTCACCAGGCAAGGGGGGACAGGA
GCCCCGACGGCCAACGCCAGCCTCCTCGCCCGACGGCGGCAAGGCAGAGGGGGTGGGGAG
TGCGCGGCCTACAACGGCCAAGGTTCGCCCTGCCGCCCGCGAGAGCGAGGGGTGTCCACC
CAGCTAAGGTTAACTGCTTGTCATGTCAAAGCAGCTAACCGATCGCCAAGCATCAACAAT
GGAAGCACGGAAGGAGACACCCCAGAACCATTCATAACAAAAGATCAAGCTCTTGGCGAA
AATGGAGGGCAAAAGAGGGCCCGTCTCGAAAGACGCGCGCCTAGTTACTGGAAAACGAGG
GGAACAGCGCATGCCAATATCATTGACAGCACGGAAACACTATGCAAGCAAGTAAACAAG
AAAATACAAGCTAGGTCGCCATCAAAACAAAGTGCAACATGAGAAGTACTCCCGCTGTAT
CAAAATTATTGTCTTGGATTTGTTAGGTATGAATATATCTAGTCACATTTTAGTATTTCA
ATACATCTATTTCTATATACAAACCTAAGACGAGAACTTTGGGACGGAGGGAGTACAATC
AACTGCAACATTTCACCACCAGGTGCATCTATTGACAGCTATATGCAAACTTGTAACCAG
ATTAACTTGCGACGATCAGCCCAATCCCAAGTAAGTACTACTAAACATGGTGAACAATTA
CGCTATTTAGGCAAAGTAGATTATCAATTCATTCCAATTGCTACAATGCTAAGCCTCAAG
CATGTATACCTAATAGTGAGTCTTTATACTATAAACTAACACTCTTATATAAGAGCAGAA
CACTAGCCAGTACTCTCTCCGTCCCAAAATAAGTGTCTTACTCTTAGTAAAACTTTGAGA
CAGTTATTTTGGGACAGAGGGAGTACATTTTTTTATCTCCGGCTAAACCAAAATTCAAAC
TAGCTACATTGCTAGTATGTACCACTGTAGGATGCAGCTATAAATATGTTCTGTAAATAA
AAATGTGCTATGATGCATATATACCTAGAAGAGAACTATAGATCATCTTACTAAACAGAA
CAGAGTAGTAAACATCAACGCCCAACCACTACAATCAAACTTTCGACGACATGCTGAACC
ACAATTCAACACTAAGTGACAATTCAAGCGGCAGCCCACAATCAAGAACAAGTCAAGGGG
ACAGTGACCTAGTACACAAGAACAGGACAAACATCTTCATCATAATGCGGAAGCAACAGA
GATGGCGATAAAAAAATGAACATCTTCACTCTCAGCAGCAGAGTCAACTATTACGACCGA
AGCTAAAAACATCCATACATCCATCCATTGTGCACACTCATCTGGATCAGGTTACAGCAT
ACTGAGCAACTAAGCCGAGACAACAATTAGTACGAAGCACGAATCGAACAAGCACCGTCA
CACCTAGGAGCTTACCACCGTCGGAACCACGGCGAGATACACGGACCGAAAGGCAACAGC
ATGCAGGCCTCAAGCCGCCACCTTGCGTGGGCGCCCACGGCCGCGCTTGGCAGGAGCGGA
GCCAGACGCGGCCGCCGGAGACTCAGCCTCCTTGGTTACCTTGGCCTTCTTGGCCGCGGA
GGGGCCCGGCGGGCGGCCGCGGCCCTTGGGCATGCCGGTGGTGGCCTTGGCGACGGCCTC
CTTGACGGCGACGGACATGGGGTCCTTGGGCGGGCGCCCCCGGCCGCGCTTGGGCGTGTT
GGGATCCGGCTTGGGCTTGGGCGGCGCGTTGGGGTCCTTGGGCGGGCGGCCGCGGCCGCG
CTTGGCCGGGGTGGCGGAGACCGCGTCGGCCTTGAGGTAGTTGTTCTTGACGAAGGCGAG
CTTGCCGGCCTCCTTCATGCTGGCTAGGTTGGCCGTGAGGAGGGAGGCGTGCGCGGAAGG
GAGGCCCTCGTACTTCTCCTCGATGTAGCTGGAAATGGCCGACTTATTGGAGCCGTTAGT
GTCGCCCAGCGCCTCGATAGCCGCGAGAATCATCTGCCAGGAGAAGCAGGGGCGCTCAGG
CCGCGGCCGGCAAATGGAAGGATCTACCAAACAAGGAAACAATACGCCGGCGACGAATCT
ACGGCGGCGGAAAGCACGGGAGCAGGGCATCAAAACTGGGCGAAACTCACCTCGGGGTAG
GGCGGGATGTCACCGGACTTGGGAGACCCTTCGGTCGCCATGGCAGCGACGGCGGCTAGA
GCCCACGGCGGTGGAGCCGAGCTCTAGAGCTAGAGTGCGGGCGCGGGCAGCGGGGAGGGG
GGAATTTTCGGATTTGGATCGGGGGAGGATGGGAGGACGGCGGGGGCAGTAGATAAGAAA
TGGGCGAGCTGCGCCGCGTGTACCAGAGGCAGACGGCGTATGACCTAGGGTTTCCGCGCG
TGGTCACCGACGTGTGGGCCGCGTGGGGCGGTATCCTTGGACGGGACCACCTGGCGGTGG
GGGCACCACGGGCGTGTCAGAGGAATCCTGCAGTTTCGGCCGATATAAATGTAGCTTTCC
TATTTTGAATGCCTTTATCGATGTGCGGGGGACGGAGACCCGAGCGTGACGTGCACGGAC
GGCGGGGATGGCGAGGCGGGGGATCGGAGGGTGGACAAGGAAGAAGCAACGGGTGCCTGC
ACGCGGATCGGTGACGTGGCGCGGGGCGGGGGAAACGCTTTTGCTGGACTTGTCGTCTCC
TGCGCGGGGAGCGGGAGCGGGAGCGGCCTCGCGTTTTGGGTCGGGGGGAATTGACTGTCC
TGCCCCGCCACGAGCGCGCTGCCCATATAAATATTTATTTATAAAAAATCGGCCCCTTTG
TCGTGCTCCGGTCTGGGTGGGCCTGATCCACGTCTTTGCATTTGTATACCGCTTAAAACA
AATACAGTAGTGTTTGAGTGAGCTAGCTATAAAAAATAAATTACTTCATCTATATCAAAA
TATATGTTGGTGGAGTATAATGACATATATTTTGTAAGAATGAAAGGTGGGCCATATAAT
AAATAAGTAGTACACTCTTCTAACCAACTATTGTACATGTTAGTTGTAAGATGAGCTATA
TGTGACATGGCATAAGCTTACAGCCGGCAGCCGGCTCTATTATTGTCTTTGCTCTTAGAG
CAAGTACAATAAGGTGACATAAGCAGGCTATAAGAATTAAAATAATATATATTCTTGCTT
AATTGGAAGAGAGAGGAGAGGAGAGAGAAG