morexGenes - Barley RNA-seq Database

Contig contig_139378
Source Contig contig_139378
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_139378 (7409 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_139378

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7482	1	2329 bp	MLOC_7482.1	Available	Available	LOC_Os12g44110.2, FRAME:-2, EVALUE:0.0, 13112.m04657 protein ligA, putative, expressed
CDS Structure of MLOC_7482

Contig Sequence (7409 bp)

>contig_139378 7409 assembly3_WGSMorex_rbca.fasta
CACCCACCCACACACACACCCACACACACACACACAACAACAACAACAAGATTGTGGAAC
CCTAGCCGTCCTCCGCTGGCTCCCTTCCAACAATGACCTGGGTTGTCGGACCCCGAGTGT
GAGAATCGGGTAGCTTAGGATTTAGGTCGCTAGTAATTTAGGTTTTTGGTCGTTCGACAT
CTTGGCTCGGGCGACAACAGCGACGACGGTGCTGAATAAAGAATATCCAATTCCTGGAGA
TCGGCTCTATGACTTATGATGGATTGGGGAACTAGCATGTTCAAAAGGGGATGTCGTGGC
AGCGGTGGCATGCTTGTGGTAGATTTGTGTCCTCGGCCTCTATCGTTGCAACTATGTCTG
CTAAAGCGCTAACGAGAAACTTGGGACTCACATATGCCCAGGTATAGCTGCAACATGTGC
TCTTAGACACTATGTAAGATAGTAAGATGACTCGTATGTCAATAAAATAGTATTTGTCAG
TTATAAGGTTAGCTGTAGATGACATGTCAACATCATGTAGCCAGTAGTTGGATATACTAT
TAACCATACTTGACCCCGAGACCATGAACCTGGCTGACCATCCATCACCCGACAACCCAC
ACACCGACCCCGAGGGCATGCACTCGACGAGCCAAACGTCACCCGAGCAATCCATGCGGA
CTCCTTGAAACTAGAGTTGAAGCCACCGCTTTGACATCCACGCTCAGCCGGTAGGTTGCC
TTTAGCCCGTTGAGACCTTCACCTCAAGTCGAGTCTTCTTTTTTTGCAACTTGCAGCTCA
TCGCCGACTCTCGCGGTAAGATAGGTAATATGAGGTTGGGGTCATCCTCCTTTTGAGGAA
AAAGGTAATCATTATAGAATTCATGCTCCAGTCAATTTATGCAAAAGTCCGAACCAATGA
AGAAAGACGGGCAATATATTCAACACTCATGATGTTGTATTTTGCTTCTATTCCATCACC
CTGTTGGGTATGATTAACTCCAAATCTGATTACATAGATTCCCCAAGAGCATATCTATCG
ATCAAGATACATATGCACATATATCCATCACACTCTACCAATCTATGCATGCATCGGAGT
ATATACTAAGCCCAGAAAGGAGGGAGAGAGTAACTAAGCCAAGCCGGCGCCGGTCTTCTT
GGGGCTGTCGTCGTCCACCTCGACGTCTCCGGCGCCATCATGGGCGGCATCGTCGTCGGA
CTTCTTGAACCTGTACCACCGTGCGCAGAACACAAAGTAGACGAGGTTCACGGCGGCGAT
CGCGGCGGTGACCAGGTAGAATAGGTCCACCCTACCCTCGTCGAGGTCCTGCGCCAGCCA
GTCGGGCCGACCGTCCCGCCCGCGCGTCGCCCGGTGCACCACCATCACCATCAGCCCGCT
TGAGTAGCTCGCCAACGCGAACCCCAGGAAGTAGAGCGCCCCGGCCACGCTCCGCATGTT
CTCCGGGAACTGCCGGTAGTAGAACTCGATCTGCCCAATGGCGCCGAACGCCTCCGACAA
GCCCGCCAGCAGTTGCTGCGGGACCAGCCAGAAGCACGACATCGACGAGCCGATCTTCCG
TCGCCGCTGCTCCACGGCCGCCGACACCACCATTGTCGCCACGGACAACGCCAACCCGAC
GCCGATCCGCTGGAGCAGCGTGATGCCGCCTTCGCGCTTCGTGAAGCGGCGGAGGGCCGG
CACCACGAACCGGTCGTACACGGGGATCCAGAGCGTCAGGGAAAGCATCTGGAATACGAC
GAAGGAGCCTTGCGGGATCTGGAAGCTGCCGGACTTGCTGATCCGGCGGTCCATCTGCGC
GGCCTGGAGCACGACGTAGGTGCCCAGCTGGGTGAGCACGATGAAGTAGACGATCCCCGA
TGACCACACCGGAATGATGCGCGCCAGGCACTTGACCTCCTCCACCTGCTGCACCGTGCA
CAACCGCCACGGGTCTGCCGGTGTCTTCCCGTCGAGGCACAACGCGTCGTCGGTGGTCCG
CACGGCCGCCTTGTCAAGCCACGCGAACTGGTCGGTGTATGCCAGCTTGGAGACGAGCTT
GCTCTGGTGCGGTGGGTCATACAGCTCGGCAGCGCCGCGGGGTCGACGGAGGTGGCGCTT
GCGGGCTGCAGCGACGAGCACTTGGGCGAAGCTTGTGAAGGGGCTGCCCTCGGGGCGTAC
ACGGACGTAGAGGCGCGTGCCAATGAAGAAGACGGCGCATGAGAGGCCCATGAGCGCGGC
GGGCACGGCGAGCCCTAGCGCCCAGTTAACGTTGCTCTGGAGGTAGATGATGACGGTTGC
CGAGAGCATCATGGCGATAGTGAAGGTGAAGTAGTACCAGTTGAAGAAGCTGGCGATGCC
GCGGCGGCCATCGGCGGTGCGTGGGTCGAACTGGTCGGCCCCGAAGGCAAGATTGCAGGG
TCGGATGCCTCCGGCGCCGACGACCAGGAAGAAGAAGGACACCAAGATGGCGGCGAGCTG
TGAGCTAGTAGGACCCTCGCATTGTTGCCCTTTGGACGCGTCGCACGCCGGAGGATGGAG
GGTGTGGATCGCGGCCGTGAGCGTGAGGATGAGCATGCCGATGAAGGAGGATACGGTGGC
GGCGGCGATGGTGGTGTAGCGGCCGAGGTAGGTGTCGCTGACGTAGGCGCCCAAGACGGT
GGCGAGGTTGCTGGTGCCGGAGAATACGTTGAGGAGGGTGGCGGCGTTGACGCTCGGCAT
GTGGTACACCGTCGTCAGGTACACCAGCATGTTGGACAACGTCCCGATCGTCCCGAGCTT
CTCGAACGTCTCGTTCCCTGCGGTAATAAATCCATATATGTTTAGTTTCACCATTTACAA
GCCTAGTTAATATCTAAGCAGGTGAGCGCCTGTAGCTCAGTGGATAGAGCGTCCGTTTCC
TAAGCGGAAGGCCGTAGGTTCGACCCCTACCTGGCGCGGTGAATTCGGTTTTTTTTATAT
TTTTTGTTCCCGCACCAGGCTATGTTACTAGTGATCTTTTATCTTTCTTTATTTTTTTGA
ACACTAGTGATCTTCTTCTTGGCTAGTGTGTTGTCTGTGTTTTAGCTTCTTTTTGCGCGC
ATCTGTGATTTTATTTTTGAAGTGGCGAAAAAAAAATGCTGATCCTTTAAAGGCGAAATG
ATACAAAAAAAATGATTTTCTAATTTTCTTATTGATACAAAAAAAAATGAAATCCAATCA
TCATGCTCCGAAAAGGCGAAATGAAGGGGAAAAGTGCGATTTTCTAATTTTCCAGCAGAT
AAAGTTGATCCTTTAAAGGATGCTGGACTACCACACAACAAGTGTGATTTGCCAAAAAGT
AAAAAAAACAAAGGATAAACGAAACAGAAAAAGGATGATAGGGCAGTGTGTGACTAGTCC
TATAAGAGTGGAGTTTTGAGACCCGGTGGCTCCTTGGAGCCCAGTGCTTTTTCAACAATG
AGGAATTTAAATTTAGAAGTTCCAGAAACTATTAAAAAAAACATCCCACGCGCACACGGG
TATGTTTTACAAATGATCGATTTTCACTGTAAATTCGGAAACTTTTAGCTACGCAAGAGA
GATGCGTGGATCCGAAACCAATACATAGTATGTATATACATAACATTTTTCGCCCACACG
ATTCCCCTTTTTATGCGCGTGAAAAGATTCACCAATGAAATTTTGCACGTACATATTGCT
TATCTACATTTAGATTTAAATACCTTTTGGATTGTTTTTCTTTTTTAGAATTTTAGATCC
CATTTTCCGGATTTTAATTGCACTAGTGGTGGTGAGGAATGAGGAGGAGGTATATGCATG
GCTTGGACACATATGTAGCTAGCAGCTATCTTGGACTCTCTCTCCTTTTTTTGCGAAAAG
CAGCCTTGTTGGACGTGTTGGCATGGGAGCTCATTTTCATGGGATTGTGGGCAAGGCAAG
GCAAAGGAAAGCTAAAAGAGGGCACATGTTGTGATGGCACGGCACGGCACGCCATGGCCA
TATGTCGTTAGCCAGCAACTAGCTAGTAGCAAAGCCAAACAACTGACTGAATTATTGTTG
TCATCACCCCTCCCTACGTACCTACTCATCGCCTTTACGGTTTGCCTTTTCATTGGACCG
TTGGTGCGCATAGATTAGTTTGTCGAGATCCAGCCACGACAATAATAACAAGAACAACAA
CAACAACAACAACAATAAATTGAGTAGCAAATTGAGCAGGAGCAAAAGATGCAAGAGAAG
ATGTGAGTGTGACATGTGCATGGAGGGAGGAGCGAACAGAGTCGAGCAGGCAGGCAAGAA
TCACCTATGACGTACGGCATGGCCTTCCATCCCCGATGGTTGTGGCCGTCGCCGGCCTCC
TCTTCGGCGAGGGCCTTCATCGCCGTCGTCTGCTCCTTGCTCATGGCCTTGTGCTCCTGC
TCCTGCTGCTGCCGAGGATCACTTGCGTCCATGGATCTCTTGCTTACTGAACACTAGGCA
AGCACCACCAAGCAGCAAGGTAGATGGTGTGGCAGTGCAGGAAGCAGGGAAGGAGATGCC
GGCCGTATATATAAGCCAGCCAGAGTATGGGATGGGATCTTGCTTGCTCTTCCAAAGATA
CTTTCCAGAGAGATATACGGAGGGAGCAAAATAAGCTTGTCTTCCACACTACACTCCAAT
CTTTCTCTCTCGGCATTGAAACTGCTGCTGCGTGCGTGTACATTCATACAGTACAGAGAC
GGGAAGAAAGCAGCGTCGTGATGAGCTGAGACTGAGAGGGACCTCCATCTAGCTCCATGT
GGTCCTTTTTATGTAGGGGCCGACGTGCCATAAAAATGCACCATCATCTCCATGGGGTAT
CTATGGTATCAATCGGTTCTCAGTTTAATAAGCTTAATCTAAAGTACGTAGCATCATCGC
CAAGATTACTTGTACGGCGACCGTATGTACGACAGAACTAGGAACATTTGGCATATACAT
ACTCATATGGAGCAAGGACGCACGTCAAAAGATAAAGTTGCGAGTCGGAAAGGCATAGTT
ATCGGCGTACGTTTTACGTCTACTACATCGGCTGTGGATTCCGATACGTTCGGAGGAGGG
ATTTGATTTGTATGGAATTCAATCACCGCCAAACCCCCTTCAAATCCCTTTTAACCAAAC
GGAGCCTAAACGAGGTGAGAAGCGTGTACGCTGGATTGCACGGGCATGCAACACGACAAG
GTTGCTAACTAGCTAGCTGGTGGGAAAGCAGACATGGAAGAAGAGAGGGAGCAGCTGGCT
ACTACGCGTTAGAGCGAGTGAGCCTGAGTAGATTGGATTGTTGCACCTTGCACGTGATGT
GAGTGGTGGTGGAACAAGCGGCTACATACTACTACCTGAGAAGGTTCCACTTCCACATGA
ACACTTGCACAGCCAGTCATGTGAAATCTGGAGATAAGAGAGGCTTCAGTCGGCCGGCTC
CACGTCTAAGAGCATCTCTTAGAGGCCCGTATAATGCCGACCGCAAAATGCGTTACTGGT
TTAGCCGACTGACTCGGACGAAGGCCGAGCAGACCCTATAAAACAGAATATTCGTTTCTT
ACGGGTCTGTTTTGCGGAATCTGCTAGTGTCGATCCGTAAATTAGTAATTGGCATGGGAA
ATGATCAATGTCCATCGATGGATTACTCTCAAACATCAACTGCCTCAATCTTCTACCGCG
TGTCCATGTTGTCCTATGTGTCCAACTGTCCATCATGCCGTGTAGGCAGCAGAAGACCAT
CTAAGATAGTTGTAGAGCTTCGGTTCGCACGAGCGTCTATTATGAAAAAACATATATAAA
TTTTCGTAACAATAGCTCTATTGTAGAATAATTCTATAACAAGATTGTTGTTATAAAAAT
ATTCTTCATTTTTGTAAAAGTTCTACAAACAAGACTTTTTTGCGAAAATTTCTACGACAA
GACATTTTTGCAAGGAAAAAACTGTAATGAAGCATTTGTTGAAAAAAAATCTACGGCTTA
ACCTATCTGCAACATGAGCCGTATTACAAAAAAATTGTACAACACTATTTGTGTTTTAGA
AAAAATCTGCAACACGATCTCTATTCTAATGGTAGAGTGTGATGCTCGGCTATTCTATCC
ACAAAATCGTACGTCTTCCGAGGTGGTGAATCTTTTAAAAAGCAATTTGGGTCATCACGC
GCGATCGTGTGTGGACCTCTAAGGTGAGTTATCACATGCAAAGCAATTGCCGTTGAACGA
ATTAAACCGGGGCAACACCGAAAACACGCCATAGAACTCCAAGTTTGACATTCTCATACA
GCTAAGACGCCGGAGAAGGAAACCATACCTCCCAGCAACCAACCACGAACTTAGCACGTG
GTCCATCTTCCAAATGTCATTGATGTAAACCATTATCTGCATCCGCTCCTCGCCTAAATC
ACAAGAATGTCGGCTTTCCACGAAATCCCCATTTGAACATTCTAGTTCCAAAATCCATCA
CCGACCATAGAGCTATTATCCTCGTTCGGGGAGAAATTGGATCTTCTTTATTCAACACCG
TCGTCGCCATCGCCGAAGCCAAGACGGCGAACGACCCAAAACCTAAGATACCGGTGCCTC
CTAAGCTAGATTATTTGCGCGCATGGGATCTGTTGACCCCAGGCGGAAGGGAGCCGCGAA
GGACAACGCAGAAATGCTGGACTTCTCTGGAGGCGGCTAGGGTTCCACAATCTTGTTTGG
GGGAATAGAAAACACAATGAATTTTGTGCAATGAAAGTACCTTCCTGTCTTAAAAAAAAC
ATACTGTAACTAGTGAACAATATTTGCAGTTAACAAACTTTGACTTTCACCTCCCTTTTC
AAATATAAGACAAATATAACTAGTGAGCAGTTAAGTGAACGAAGACATGTAATACATATT
TATTACCCACGGAAAAAAGGGAAAACATGAACATGGAGCATTTAGGGGAGACGTCGGTAA
CAGTACCAAGTAGCTAGGCGGCTCCCAAACTTTGACCAGCATAGATAGATGGATACATTG
GATAACGGCTGTCGGCTGTCATCTATTTTGCTCCATGCTTGCAGGTATCTAGTTTCTAGA
AGCTGTTTAATTAGAGCAAGGAAAATCGGTATGTCGAGACCTGTCAAACTTTCCCTCTTT
ATCATTAGTTCATGATCAAGTGGAGTGAGTGGCATTTTCTATCGGCTTTGAGACAACGAT
CGATCATGAATTCATGATCGCACATACTCCTGTTGGGATAGACCCCGGAGCATGCGGTGT
TTTGGTCCCATAGATCGACGATTCATGTTCTAACGGATTGTCTTCCCGTACTTCAGCTTA
TTTTGGCGGTGGTGGTGGCGATAGTATTGTCAAGCATGCTCTTATCATTGGGTATGTTGA
TTCATTTTTTTTGCCCCCGGTCTTCTTTCCGGACAGTACGTCTATGATGCAGTGATTCGA
CGACCTGTATGGGGGGGGGGGGGGGGGGG