Contig Data
morexGenes
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Map Locations of contig_139235 (5723 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_139235

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_7434 3 2070 bp AK369429 Available Available None
MLOC_7433 3 1015 bp MLOC_7433.1 Available Available LOC_Os01g52730.1, FRAME:+2, EVALUE:1e-24, 13101.m05522 protein DUF584 domain containing protein, putative, expressed





CDS Structure of MLOC_7434






CDS Structure of MLOC_7433






Contig Sequence (5723 bp)

>contig_139235 5723 assembly3_WGSMorex_rbca.fasta
CCGATCAGACCCCACATCCCGCCCCGACCCACAAATATTTTTGCGGGGTACGGCAAAATC
TCGGTCCCAACCCGCGTATTCGCGGGTTTCCACCTCGCCGCTGCGGTGCCCTACATATGA
GCGAAATCGGTTGGTGGAGGAACATTTCAGTCCGCGCTTTCCCCCATCAAAGCATATTCC
ACGAATATGCTCTTTTACGGATCCGTTATGCGGGGTCTGCATCCGCGTCCGTACGCGCCA
GCCCGCATAGACATTTTTATGCAAACTGCAAACACGTTGCGGGCCGGACGAATGCGGTGT
TTGCTAGAGTTGCTCTTACTCTGCCAAGGTGACAAGTGAGCAATGATCAGTGACGCCTTT
GACCGAGACGTTATGTTGTCTAGCATGGTGTGCTGGATATGGATGTCATGTAGAAGGGTC
CTTTGTAAAAAAAAATGGATTTATTTTGTGCTGAACCTTGACAAAAAGGATCAGCTTTTC
TTGTTTTTGACGATGGATTCCGTGTGCTTCCCAGTCGAGGACCAAGGATTACACGCGTAG
GTCTGTGAGAGATTCGCAGGGGAGCAGGGGACGCGTGTGACGTAGTCGAGGGTTAATTAA
TCTGGATCAAGCCTGGCATAATCTTGTCACACTTTTAAAATGGGATCCCATGCTCGTGTA
TTCGGTCTCGTCAGAACTGGCTGCTGCGCGCGGTGCTTTAGATAACGATACAACTTTCAA
ACAATTTCAGCACCTTGTTTGTAAATCTTATATTTTCTGTCTCTTTTTTTTTGCGGGTGA
CTTATATTCTGTATCTGCAGGTGTACGTGGCACCTTCTGGCCTTCGTCACCTCTCACCAA
TGATCGGATTCATGATTAGTGGTACCAGTTCATTATATAATTACACAGAGGAAGAAACTG
CTCATACGACCAAAATAGGTTGCACCTTTGATTCTAAAAAATGCACCTTCAAAAGCAGGA
GGAGCTTTCCAGCCTGAATATATTAGCACTCACACAAGGTACGAGTACATGGGAAAGATT
ACAACCCCAGGTGACAGTTTGAACATTGTATAGAGCAAAACACATTTTTTAGCAAAACAC
TGTATAGATACTTTATTTTAAATTTTTATTTGAGGGGAATATAGCCAATTTATTTCCATG
TGGCCCGGTGGATTGGATCAGCCTCTGTTTGACCTGGCCCGGTACGGGTAGGCCCGTGAC
CCGGCTCCGACCTCATCCTCCACGCGGCTGCCGCCGTACGTGGGAAGCTACACCTACACG
GCATCGGTGCCACACCCACTGCCCTATATATACGCGCCCTGTTCGCCGATAACCAAAAAG
ATCATCGAGCTTCCAATCCAAGTCGGCAAAGTCCCCAAGTGTAACACGCAGGCGAGCACA
AAACCGCACAAATATGTCGACGGTGGAGCAGGAGGAGCTGTCCGAGTGCGAGGTGCTGTG
GCCGGAGACGCGCCACGGCGCTCCGGGGAGCCCGTATGGGCCATCGACGGCGGCTCCCGG
AGGAGCCTCCAGGGATCACCGCCGGCAGCGCTCTGCGCCCGTGGACATTCCCAGGCCCGC
CCACCTGCCCCGCGGGCGCGCCGACCTGGACGACGAGGAGGAGGAGGAGGAGCACGACGG
CGCCATGGTGCCGCCGCACCTGATGGTGTCGCGCAGGTGGTCGGAGGGGAAGGCGGCGGC
GTTCTCGCTGCGGTCGGGGCCCGGGCGGGCGCACCGGGACCTCAGCCACCTGCGCAACTC
CGTGTTGCGGATGACCGGCTTCATCGAAGGGTGACAGTGACAGAGAAGGCGGGCCCGCCG
TCGTCTGTGCATACGTGCGAGCGAGGAAAGTAGCCGGTGGCACCACGCGTCTTCGCCACG
GTGTTGGGCTGTTGGTCAGTCAATTTTGTTGGGCTCATCTTCCCCGTGGCTGCCAGTCGA
AATGATGAGTCTCCCTTGGGTTGGTTCATGGAAATCGGCCGGTAGCGAGTTTAGGATTAT
TTTTCTCGGAATGGAATAAACTACTGTGAGATTCTTCAGATTGAACCGCGTTCGTTTTTG
CATCCTTGTGCCGAGAAGCTTCCCTTTGCTGTCGCCTGCCGGCACGGGCTTTTCATCATT
TTAGTGGCCAAAATGTACTCTTTGACAAGTCTGACAGGTTGAAGCACCCTAGCGAAAAAC
GTGCGATTTAGCAGGTGGACAATTCAAAGAAAAAACATCAAGTAGGCTTCACGGAACTGT
AGATTGAACATCTATCATCTGGAAGGTAGCACGTGTTGACGTATAATGTGCTGCCTAGTC
TCTTCAATCAGATCGATCTTTTGGCTGCATTGGCTAGAGCATGCGCTTCTACATGGTATC
AAAGTCACACGTGAGGGGGAGTGTGACGTATAATGTGCTGCCTAGTCTCTTTCATCAAAT
CGTTCTTTTGATTGCATTGGCTAGAGCATGCACTTCTACAGTACAAAAAGTTTCATGACA
GGCAAGAGGGCCAGAGGGGTCATGTTAAAACTGCTCAAAATTCTTTATTCAATGGTGCTG
GACCGATAACTATTTCCATGGTTACTGCTCCGATACAAAGTGAAACATTTCATGCATCTA
CGATGGATGCAGGATTTGACAATCTGTCGTATGATGGTTTTACCGTTCATACCCCTGGTT
ATTGATGACACTCATCTATCACCGTAGGACAAAGTAGCTGCATACAGGATGAGATTCTCT
TTTGTGAAGGAGCTCGGCGAGCAACTACATAGAATGAAACGCTCTTGGAATTTTAGGACC
AGAAATATACTGCGAAAGCCGAAAGACAGGCTGTGGAAATCACAGTGCCCTCATCGCCTT
GATCCAATCGATGTCTAATCTAAAATCGCCTGGCCCAGTCTTAGCACCAGGAACGCCGCC
TTCTGCATTTAACGAGACAGACATTCCCACGACGCGAGAAGGATTCATTTCCATCTCCGC
TTCGATCACGTTTCCTTTCCATGTAGGCAAGTAGCTAGCAAGAGGGATCTGGATGGAGAA
AAACAGTGGTATTTTAATCATGAACAAACACATAGTTGTCGGTTGTGACTAGAGAAATTA
CCTTCAGGATGCGCCAGCCACCCTGTGGTACGTACACGAAAGCCTGCCACGAGTTATCTT
CCTCTTGTCCAGGTGAATTCACCCAGTTCTCTGTGTATATCTGCATACAAATTCAGATTA
TGGAACAATATATTGACTGGACATCAATTATTCATTGTTGTTTCTAGTCGTCGTATACGT
ACAGTGGATATGTAAGTTCTTCCATCCCCTCTGAGCTTAATTGCTATTGTGTCATATGAA
TCAAGATCGATGAAACCATCAAACTGAAACAAGGAATCGCATGAAGTCAGCAAAATAGTG
TCTCCATACTGAGATTGCTCAAAATTAGAAATCCTTGTTACTTTGTGGACATCAAATGAA
AGCTCAACTAAGCTTTTGACCAAATCCTAAGACACTGCATATAAATTACCCAACCAGGGA
AGAACAAAATAAGGTGAGATTTAGGAAGCACGACTGTGGGTATGCTCAGCATTATGGTGT
CTACTGAATATATTCTACTTTTTGAAGTAACTGACCATTCCCTTCTTTTAAATTGAATAA
CTTTATTTTATTAGAATTTTGACTTGCTAGTCAACATACACTCTTCACCAGCTACAACCC
TCAGTGCAGACAGAACGCTATACCTTCTTTGATCGCATTCCGCAGAAACCACTTCGCCTG
ATCCTCCATGGTGATCCCTCGGACATATCCAAGGAGAGGTTGCCAGAAAAGACACCTTCC
CAAGTGCACATGTTGGTTAAATCATTACAAAACTGTCAAGTTTAAAATTAAGCTGAGCTA
GTAAGGAATAGGATCTATGGAAGTCATGAATAAATGGACTGCATGTTTCATATAATTATA
TTCAACTGTTATTAACTACATAGAAAAGACGCAGCTGATATTCCCTGCTAAACTAGACTA
GTACAGACAAATGACAGTGAACGGTATTACAAGGCATTCCCATTTTTAGACAGCAATTAA
GCTTATTTCTTCTTCTAGGTTCTACATGACTGCAATTACACACCACACACTTTTATCTTT
TTCAAACTGGAAATTATAAATCATAATGCGAGCTATACTTCAAAAGATTGAGCCAGCTGG
AAAAGTAAGCATGTCAAAGACATAGTACCAGTTGATGAAGTATCTCCACCAGAAACACTA
TCAGTTATCTCCAGTGATGCAGATGATAAACCTGGAGAACAACACTGTTCAATGATATTA
TCTCACAGATGCAAACACAAAGTTTTTACAAAAGGTGTCAGAAGGATGGTGTATAAATTT
AATACATATATCAGAGAGATAATAATCTGTGGTGGAGAAAACAGGTTATCAAATTTCTAT
CAGAAGTAAGAAGCAATCCCATGAAAATTATTCTAAGCATGGGGCACTACACAGTCTTGA
TGTTTTACTCATGTATAAAGGAAAAAGGGTACCATTTGGCATGGCCTGTTTGGAATGGAT
AGACACCCAATTGGCTCACTATAAAGAAAAACTGGTACTCGCTCTGTAAAGAAATATAAA
AGCATTTGGATCACTACTTTAGTGATCTAACTGCTCTTATATTTCTTTACGGAAGGAGTA
TAATAAATTGGTTTCAGATATAATACTCTGCGGTATGCACAAAGGAAATGGACAGTAATG
CTCTACTGTAGCACATATCCTTAGGAAGGACTATACCATACATCAGGAAGATTCAAGTAC
TAGAACTCAATAGCAAATCATTTTATGTTGCTCTCCGGAAGAAGAGAGCTTTCTTGACTT
TATTCATTTTACTCGAAACAAGGAAGATACATTGGTATTAGATATAATACTCTGCGTCCC
TAAAAAAAAGAAATAATACTCTGCAGTCTGCATTGAGCACAAAGGAAACAGACAGTAATG
CTCTACTGTAGCACATAACTTTAGGAAAGACTGCACTATGTAAGTACCAGATAGCAAATC
ATTTTATGTTGTTCCCTGGAAGAAGAGAGCTTTTCTTGACTTTAGTCATTTTCATTCAAA
ACAAGGAAGTACTATGGACGCCTAAATCAGTTACATATTCATCTAAAGACAACATTCTTC
AGTGACCCAACATGTCAGCTTCTTTGCACATTCCGAGATAAAATGAAAATAACAAGTTGG
TACCAGGGAGAAATGTAGGGAATGTAAATCTTTCATGAGTATCTCACAATAACAAAAGGA
CACACACGCTTCATTCTATCATATCAGTTATTCAGGGAAACTGTGACAACTATCATTAAA
CAAGAAAACATCAACTTGATGCATTACCTCCATACTCTGAATCCGAGTACAAGTGCCACT
TCTTCACCTCATCTTTTGAATTGAAATTGAAGATGTATCTTTCACTTGGTGGAAATAAAT
CTTCTGAATTCCATACAACAGCTGCCAATTTGGTATATGCAGATACAAGATTAATGCATA
GGCCCAAGATAATGTGTATATTGTGATGTACTACTGTTACAAAATCCGTGCGTAATTCAT
GGGGTTAGATATGCCAAAAGAGTTATTCAGGTGAGTTAGGGGAAGGTTTGAAAATTCATG
GGGTACATGTTGCCAATTACTCCCTCCATTCCTAAATANAAGTCTTTTTAGAGATTTCAC
TAAGGCCTTGTTTGACATAAGTGGTTTTCAAGCCCCCAAGGAGGTGGGGATTCTAGGGGA
TTTGGTGAATCCCTCTCTTCCAC