morexGenes - Barley RNA-seq Database

Contig contig_139193
Source Contig contig_139193
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_139193 (8183 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_139193

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7419	1	1351 bp	MLOC_7419.1	Available	Available	LOC_Os12g15590.2, FRAME:+2, EVALUE:9e-156, 13112.m01645 protein heat shock protein DnaJ, putative, expressed
CDS Structure of MLOC_7419

Contig Sequence (8183 bp)

>contig_139193 8183 assembly3_WGSMorex_rbca.fasta
CCGGACCCCGAGGTGCCCGAAATGTTCGGATCACAGCAGGACACAAATCAGAGACTAATA
GCATAGAAAACTGGCCAAAATAAACCGAAACTGCGAGTTTTGAGGAGTTCCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAAATCAGTGAGTAATAGT
ATATGTGATGTATATCTGTATGTGGTTGTTGTAACAGCTAGTCCTTGTCTCTAGGGACGT
TTCCTCCTCCAACGCCACCTTCTGGGTAGTGCCCTGCATTTAATGACTCCCTTCTATTTA
TGTATCTGAGACTGACAAGGCAATAAACACGATTATTCACTAATCTTATGACGAGAGAGG
ATGCCATGATATCTCCGTGGGCTGTACTAGAGAGATTCCCCCCTTTCGTTCATCGCTGCT
CGCTGATGGTCTCCATGCTTATGTATGTCAGCTAATATCCATCTATGAAATGTTCCACGT
AGAACTCAGTATCTAGTTTGCTCGTCTAAGCATGTCTCATGTCACATGTGATGCAAATGG
AAATGGTAATGCCATCTCTTCATAATAATCAAAAAGATGATGCCCGACGGCTTGCTGCGG
GAACTTGATAAAAGAAACATGAAAGTTGTTAAAAAAAACATTTATAACTTATGAGAAGCG
AATGCAAGCTTACAAATGAAAATAAAATATAAAGAGTATAAAAGAGAAAAAAATACAGTA
AAAAGAATGTCATTTTTAACAAAAATGTGAGTGTGAACTACATGCGACCAACACACATAT
TATTAATACAAAATCTAATGTAAAAAGTAACTTAAGAGTAACATATATGAATTAATGATG
TGGTGCTTGCATGCATAGAGTAATAAAAAAATAATATTATACGACTTACATGCATGAGTT
GTTCATGTGACGTACTTGCATGTCTAGAAAAAATAGCTAATGGGTTGTAGCTATTCAGAA
ATAGAAAATGACATCTCTTAATAATTAAAATTATCATGTCTTAATAATTAAAAAATTCAC
CTGTTAATAAAAAATGTCACCTCTTAAATATTCATAAAACTGTCGTGCTAATTGATAAAA
AAAAATTAAATTGCCATGTGACATAGTTTTGAAAATTTATAGATCTACGAGTAAGAAGCA
TAAAACCATCACATTTACGCCCTTTTTTATAGAAAACCATCTAGTTCCCAATTATTGTGA
AAGCGATCGCGTTTCTGGTAAAGTTTTTGCAAAATACACCGATCGGATGATTTGAAGCAT
TTAATCACTTTCTGATAGGTGGGGTCAGACTGTAAGAAGATGACATCCCAAGAAATTAAC
AGACCCCTAGATCTTACAAAAAAGCAATCACTTCGATTCGATTCAGTTGAGTTGTTGAGC
GAGGTCGCTTGGAACCACTCAACCGAAGGAATCAGCTCAACAAGAGAGGAAATTTATTTT
TACCACAGCTAGGCTGCAATCCGATCTCGTCTTTGCTGATTCAATAATACAATATATACT
GCACCACCTACCTACGGATGGGTTTGAATCTTGAGTAATAAACTGACTGAATCTAGGAAA
CTAAACTGAATCTCCAGACAGGCATCTGCGTGACCCTTCAGACTCCTGTCTGACCCCACG
CGCGAGAGAAGCCAGCCAGCCAACCAAGCGTCAAATAGGTCGCAGTTGCCTATTTGGGAC
CACTCTGCTCCATCAAAATCAGTTCCGCTCCATCAAATTCAAGTAGATGTATCTATAGAA
TCCAAATAGCATCCAAGACAAGAATGGAGACATGTAAATAGCATCCAAGTAGATGTATCT
ATAGAATCAAAATAGACGTAAGGAATGTTATCATTAATACATCCACTCCACGGTGTACGA
CATGGTAAAAGAATCCCCTGTATCTTATGTTTCTTCAGTATCAATGTCCCATGTTTACGG
GTCGACCAACCCAGGCCTGACTCATGTATGCCTTCGCTTCCCGCTTCCCACTCCCACTCG
GGTATGTTGTTGTCCTCCTACATGACATGCTGTTAGACAGCCTCATCTCGTAATCTTCAG
TCAAAATTGGACTGCCTACAAGCTTTATCTTCTACGCTGCTTCGATCCTCTTCTCGCCTC
CGCTATGTGCCTCTCCATGTTGGCCTTCTCCCAGAGGCGCTTCATCACGAGATCCTTCTT
GGTGAACTCATCTGAAACACACAAGATATATGATCATCTGTCAGCGCTAATGGATTTTCA
ACTCGGAAATAACGGTGCACTCGCTCGGTGACACAGCAAAGAACGTCTATCTACAAAAAA
TTACATCCATAGCTACGCATTACTGTTTGGTTCAACCAGCAACTCTCAGTTCGACCAGTG
GGACATTGGCACTACTACACTGCCAGACTACAATGAACGGATGGATAGTCCTTCAAGCAT
CTGTGTTCTTGTTGAAACATCGAATTGGACAAGCTACCACAGCTCTTATACATGCCTGAC
AGGCAGATTACATGTACCTAGTCATGCCCAATCTCCATGTTCATACAGGTGTCACCTTGT
CCATTGGGTGTCGTGGTTGTAACCAGCCGACTCATGGTTTTAAATAACCTTATCTTTCTA
TCAATGCATCGAGGTTCAAAGCTTTTTTGTGTTTTCTATAACAAGAAAAGAAAAGGTGCA
CTTCTTTTGACAATTCAACTATTTTTTTGACTACTTGGTGTACATCTTACTTGGATTAGT
TAGCATCATAACTAAAAACAAATATCCACTACAATATATTATAGCTTGTATCTGAAAACT
GGAAGGAATCTGGTATAAAATTGCAATGATGATTGGAAAGGAAAAGGCACAATATTTCAC
AATCCCAAAAGAGGGCTGACCAAGAAGTAATATGGTATGACAAAATACTACGGTGGTAAT
TACCAATATTTTGCCATGTGCCGGCAGGCATCCTAAGGGATGTCCGAGTCAAATAGCAAG
CATCCTCCCATGCATATGGTGATTTCTTTACCCGGTATCTCCAAAACCAGCAAATCTGCC
AAATAAGCAGCTGCCAAAAAAAAAAAGTATACAGTTAACTTCAACATGCGTCCGGTACGT
TTCAAACCTCATGCAGCTATTTACAAAGAGTTGAAACCTTAGGTGTGCCATTTGCAATTT
ATACTGTTCAAGACAGTCTACCAGAGATGAACTGACCTTGCCAATTAAGTAAGGCAGAAG
TATCAATTGGACACCACAGAGATTCCACACAGAAGGTTTCTGAACTCCCTGAATTTGCAA
GTCGACTTCATTTGTAAGCTCATCTTCAACCTTTCTACATGAGAAACAATCAAACGACAC
TATTATGGCCAGTCATAGTAAGCCAACACAAGTGATATGCGGCAAAATGGTTAATAAGGA
AATTGTATCATTAATAGTAGTATCAAAAAAAGGAAAGCCTACTTGTAAAAGTATGTATCT
TTCTAAACAATTTAGTTTCTAAAAGGATAAACAACCTAAACAGGCAACAGAATCTATCAA
GGTTGCTCAAATATTACCAACAGCATGTACACAATATTTCCAATAAACTTTAATATCTCA
TTTGAATGTAAATTAAAGATGGAACTGGGTAGTGCAAACCAAAGCAGCCTTCAAATTCTC
AGATAGAAAATTTCAGCCCAAAATTTAAACTCATTAGATGTCATTCTTACTTGTCCATCT
GCTTGTTACCCTTCTTTTTGCTTGAAATTCCTCCTGTTCGCTCAAACTCCAATGCTTTCA
ACCTATTTCTGTAGGCAGGAGTTTGCTTTACGCTTGCGATGGCCTGAAACAAATGCAGCA
CACTTTCAATGTGCGTTGTTGTTAACAAAAACGCAAGATATATTGTTATGCTAAAAACAT
GTAGTCGTCTTTCCATCACATAAATGGAGAAAACAATACATAATCTTATGTTTATGCTGA
CATTCAACGACATAACAAAATGTTTATGTTGATCATTTGGTTCATAAGCAGCCAGTCAGA
ACAGCAGACTAAAGTCCCACAAGCTTACTTTTGCCTTTCTGTTCCATATCCATACCTGAC
TATATGATGTCAACTGGTTTATGTATTGGAATGCTGACACAATTAAAAGAAGGCCAACCA
ACACAGAACGGGTATCCTGTCACAAACAGGAGGAGAGTTAGCTGCAGTAGTATATATGAA
TGATGCAGAGCATTGCTATTAAACATATCATTAATAGAGAAAACTAACCGTTTTATATCC
GTAGTAAGCCCTGTAGTATTGAGCAGTGTTGTAGAAGAACTGAAATGATGTCAACAAAAT
CAATATTTAACAGTGTTCAGTTGAAAGGAAGAGCAGACCAGGCGGCCAAAACAATGTCAG
TAACTTATCAATACTATCTAATATATGGAAAACTTGTCCGATCTATCAAACAAGCTACTA
TGAATAGACATGGTGTGGGTATCTGACGGAACATATTTGTATAAATGCATTATTTTCGCC
TATATTAGCATCATGCTCGCATGTACAACTTTTGTCTCATGAGTGTTATCTTTTTCCCAT
CTGAACTCTGCATAACCAAACAAGTGGACTTTCCCACAGTAAACAATAAGACAAGTTTTC
ACGTTTCAGTCTGGATGAGTAGAGAAGACAAAGTGCATCTTGTTAGATTTACTTATGCCA
GCCTAGAAACATACATACTTCACGTACTAGCACTGATTATTCTGAGTAGGCAAACTGTTT
TTTCTGTATCTTTATTTGGCAACCAAGTAGCATATCTTGACGCAATTTTCAGTCGGTATG
AATATTCTTCATCAGTCATGCTCCGGATATTTCATTTGTTAGGTAAATTTTGCAGCCACG
CAATGCACCAATAAGAATATAAGAATGTATGTCAAGCTGTGCAATGGCTACTGATTAGCA
TCTATCTGTCAGCTCACAGTCTACTCTTTTACAGATATTTCTCATGTGGAATTACCAACA
TTCATTCTTTATGCACATTCCAGAACTGAAGGTAGAATGTCAACCATGTATTTAGTTTTT
CATCTATAATATCCCCTATTCAATGAATAAAAAGTAAAAATCATAAGATTTAGATCAGAA
ACAACTTCCAAGTCCCATATAGGGGAATAAAAAGAGTGTGTGGTCCACAGATCAAACCAA
AAAGTATTCACTAGATACGTTCTATAATTTTTTTCCTTAGCATCACAAGTGTACAGATAG
ACTATACATACCGAATGACTAATGGCCATGAAGCCAAATCTAACAAAGAGTAACCAGGCG
TTTTTTTTTAAGGTAGATAAACAGAAGCAATTTGGCATGCTGAAGCCAGACAAGGGAATG
AAGGTTTACCTCCTCTGGATGTGCAACAGCATAGTCATACTTCTCCCTAGTTTCTTCATC
TTTGAGTATCTGATAAATAAAAATATAGAAACACTCAAGAACCAAACAGAACTGGAAGTG
CGATATTAGGGAAATAGCTGTCATGTTGAACAGGGCAGATGTAAACAGCAGTCAACACAA
CATCAATGTGCTCCGTGAAATGAAACCCTTCATAAGTTTAACAACCTAAATGATGAAATA
GCTCAGTTTCTCCATGCAAGAATAATAATAACTCAATGCATACTGCAAATTACATATGGA
AACTACAGACTTTAAGGTGGAACTACGAATTGGAGGGCACAGTTGAATAAAGAAACGTGT
TCGTAGCAAAAGTTTCAGTGAGCTCCAAGCCTCCAACTACATGCTTGATGGCCTAAACTA
GTGTACACGACCACGCCGTCGCATGCCAGGCAGCCCTTAGAGCAGCTAGTTTCACAGCAG
TAACTGTGTTAAACTTTTTCTTCCGGAAGAGGTGGTGGCAAAGGGGAAAAAAGGGTAGGC
ATTAATTGTGTGTGCTATGCCACTGCCTAGTGCCCATCCTGCCTAAGCGCATGCCAAGCA
CGATTAAGCGCTAAGCGTTACGTTGTTGGCACGCTTAAGTGGACGCATAGGGGCTGTATT
TTATTTTCACTCAGGTAGCCACTTTCCTGAATTGTGCAACACTAATGAGTGAATTCTGTA
AATATACTGGCGAACAAGCGAAAAGGCCGTGCGCAATACGCGGCAGGTAATACATGGAAT
TTGACCAAAAGATACTGGGCAACACGAGCGCCTAGGCATGGCTATGCATACACGCTGTTT
TGTTTTTTCACTCTGGTAGTGGCTATACTGAATTGTGCAAGATTAGTGAGTGAATTCTGT
AAACATACCGGCGAACCTGTGAAAAGATGACGCACGATAAAAACCAATTAACACATGGAA
TTCGAGCAACAGGTCTTGGGTATACATAATCAGAAGCAGGAGATGCAGAGCTGTAATAAG
GGAGCAAAACAAGGTCGCCAATTGCTCTTAATTCGGGCAGATAGACAGATACCTCGTAGG
CATTGGCGACCTTGACGAAGAGCGCGCGGGACTCCGGGTCGGGGTTCTTGTCCGGGTGGC
TGCACAAGCGCAAGATATCCCCAAGAAATGGGTCAGGGATCTTGTCCGGGGCGGGAAACA
AGGGAAGGGGATGGGAGGGGATGGAGAAAAAGCTCACTGTTTGAGGGAGAGCTTGTAGTA
GGCCTTCTTGATCTCCGACGCGTTGGCATCCTGCTTCACCCTGCCGACGCGAGCACCCGT
GAGAAGACGGCGGGCTGAGCGGAGGAAGCGAGAAGGGGATAGGCGACGGGGAGGGGGCTT
ACCCGAGGAGGTCGTAGCAGTCGTCCTCGTCGCAGTAGATGGCGTCGGAGGCCGGGAGGA
GGAGGGCGGCGACGAGGAGGAGGAGGAGGGGGGCGGCGGCGGCGGCCATGGACGGCGGCG
GATCTGCCACGCCGTCGGAAGGGGGGGAGAGAGAGCCGAGATCTGCCCTCGGGAGTGGAG
CCGGGTCAAGGAAGAAAGAAAGGATGAGAAGCTCATGGAAAAAACACTCCTCATCCAAGT
TTTTCTCTCTTTTCTTTGAAGCTATTTCTATTTACAAATTGTTCCCAAACAAATCCATTT
CCAAACTCATATTTGACGCGCTGCAAATCTCATACGCCGGTCGAAATTCCGCTTCGTTAC
AAACAAATGTTCAGATTTGACGTCATTTAGCGAGTGCCATGCCGGCATATGACGTCAGCA
ACCTAACGAAAGAACCGACAACAGCTCAAGAAAGGAAGGCGGTACATGACATGTAAGTGG
GGAGTAGCCTCTCTAGTAGATCAGATCGCATCGACGGCCGCGGTGTTGTGTTGTATCTAG
TTGCCCTCTCCTTCCACCTGTCGCCCAATTCTTCTTCTGTATTCGACATATCCAATGAAT
TCCTCTTTGATTAAGCGATTAGTGGAAGGTAGCTATCATGTAGTATTAGGGGCCACCTCG
TCACTATTTCTCGTTGCCTTGGAGACATGCAAGTAGACGGACGAGCGCCAACAACTGCTC
GCGCCCATGGATCCGGTGTCCAAGGCTTACATCAACAAACTCATTGACACCTTGACGAAG
GCCAACGACGACACACGTGCAGACTTCCAGGGGATCAAGGCCCAGCTTGACACCTGGACA
ACGCAAGTCGAGACGCTCACGGCCTGGCGACCCGATCTCGAAGAGCACTTCTCCAAGATG
GAAGAATGGTCACCGCACTCCAAGGCGAGTCGCTCCCACAAACGGTTGCGTCACATGGTG
GATCACAAGCTCCTGGACCCTTCAATCCGGCGATCCACGGCAAGATCCACGGCCCCAATG
GCTACGGTGTGTCCCAAAAACAGCGGAGTGAGCTGTTGTTACGTCTTCAATGTATCGATA
ATTTATGAAGTATTCATGACATATTTACCTATGTTTACAATACTTTTACATGGTTTTGAT
GCATTTTATATGATTTAGTTGGTACTAACCCGGACTGGTGTTGTTTTCAACAAAAACTTG
AAGATGCTTCTGTGGTTGCGCTCCTCGGGATAACAACGGCCCATGATGGCTTCCATCTGC
CATTGTCGCTGCAAGCTAGGGCTGAAGTGTGACACCTTCAGCATCTGACAGAGGGGATGT
TAGCCGACTAAAAGGCGACATGTGCAACAGTTAGGTGTGGCTTATTCCTATGCAAAACTT
GAAGATGCTTCAGTGGCTGCGCTCCTTAGGATAACCACGACCCATGATGGCTTCCATCTG
CCGCTGTCGCCGCAAGCTAGGGCTGAAGTGCAAGACCTTCAGCTTCTCATGGAGGGGTTG
TTGGCCGACTAAAAGGCGACATG