| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_139058
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_7350 |
1 |
876 bp |
AK248558.1 |
Available |
Available |
None |
| MLOC_7348 |
4 |
2642 bp |
MLOC_7348.1 |
Available |
Available |
LOC_Os07g30930.1, FRAME:-2, EVALUE:0.0, 13107.m03122 protein pentatricopeptide repeat domain containing protein, putative, expressed |
| MLOC_7349 |
1 |
793 bp |
None |
Available |
Available |
LOC_Os07g30930.1, FRAME:-3, EVALUE:2e-39, 13107.m03122 protein pentatricopeptide repeat domain containing protein, putative, expressed |
CDS Structure of MLOC_7350
CDS Structure of MLOC_7348
CDS Structure of MLOC_7349
Contig Sequence (8502 bp)
>contig_139058 8502 assembly3_WGSMorex_rbca.fasta
TATTGATATTTTTTAATATAAATTTGCTCAAACTTTGCAAAGTTTGACTTGACCGAAATC
TAATACGCGGAGTAAAAAGGACCGGAGGGAGTAATTGCTAAAACTCACCAACCTTTAAAA
TTGGAAAAGGCTAGATTTTTATTTGGTCAACTAGTATAATCACCCCCTCTAGACACACTT
CGGATCCTACGACGGCCGCAACGAGAACTGTTCATCCACAACCAACCAACCAGCTAGCTA
AGTCCTCACCACGTCTCACGCAAGGGGCCCGATCGATCGATGCATAATCTCAACTCGTTC
TACACGTACCACATGGGCAACAACGACGGACCTTTCATTGAGAGGCAACCAACAACAATC
GGCTATATACTAGCTCAACAACACACGTCTCGCACGGGGGATCGATTGCTCGGGTTCAGT
TATAGCAAGCAAGGAATCGCTCGGGTTGAGTATGTGTTGTGCGAGGTCGATCGCTCTAGT
GTTCCGTAGTGCGAGGGATCGATCGATTGCTCGGGTTCACTAAGGTAGTGAGCGACTTGC
TCGGATTCACTTAGCAGCTAGCGGACGCCTCGTGCACACGCGCATACGAGAGAAATGCGT
AAACCACACTGCATCGCTTGGTCTTGGCCACCCATCGATTGCCACCGTATCCGGGAAATC
CCCTAAAATTTCCTCGCCCTCACTTTCACCACGATTTTTTACGTCATGGACGACCCAAGG
AATATCATGCAGGTGTGTCTTGGGCCATCCGAGGACGAAAAGCTGATTTTCTGTCATAAT
GTTTTGTCATAGAAGTGGGAGCCCACCATATCTATGATGATAAGTGTTTTTGTCACAATT
ATCATCATGGAAATGTCACATATCCATGACATTTTTTTTCGTTCAGCCCATAATGTCACA
GATATGTCTTTTGTTGTAGTGTAAATCCCGGCCTCCCCAACCAGACGCACAATTGTCATA
GCAACTATAATTGGTCCAACAAATCCATTGTCTTCATCGAGCAAGTGGTTCTATCCTTTC
ACTTCTTTATAGACTGTTTTGTACTCTGAAGTCATTGCTTTCTCGTGTGTGTGATGACAT
CTACCGAAGACATTCATCTCATTTCTCCATTTGTCTTCGTGTTACCTGAGTTTATCTTTG
ATACATCTCTGTATGCATAATGACTATGCCTCTCTTACCTGTTTGTCCTCATTATATCAC
ATGCTTAGCCGAATCCCTTAATTGTTATCCTTAACTGATCCAGATTCGATTCCGCATACT
TCAAAGACATTTACTATTTTGAAGCTTTTCATAAAAATCGCCTATTTACCCCCTCTAGTC
GATAACTAGCACTTTGAGTCTCCTTACACTTACTTGAATCCCAAATATTTTATGGTTAAA
ATAGACGGGCACAACAACTCGTGCCATCAATGATCTAGTTTGAGTTAAAACTCTAAGCCT
TTGTCGATCACATGATGTTGGTGTGAGCGCCTGTGCTGCCGTCCTTGGTGCAGTGTGAAA
TCTAGTGGTGTGCATGATTCGGGAGCGATGGGGAGAGAGGATCCATGCGGGCATTTTTGG
AGAGAGGATCCATGCGGGCATGATTTGGGAGCGATGGGTAGATACCTTAAATCTTAGAAG
AAAAAAAGGTTTTGGTGAATTAGAACAAGAGAGAAATGCTCATGAAGTAGTTAAAGAAAG
AGATGCTGCGGAGGGTCGTCATGCGCTTGTGCTTGGTTGTCAACTATGTAGACATGGTGA
TGCAGCAACGGCTCTGACGACGATACATGGGTGGTTCAATAAATGCCGGCCTTTATCTGT
GGGGTTTCATGAGTTTCGAACATAAGCTATGAACCAACTCATGTAAGGGGATGCGTCTTT
GTGTACCGTTTTCCCCATCCTAGGAGGCATTGAGGATCTCCGAGTGAAAACTAAATTGTA
GATGGTTTCCAGAGCGAGTGGTGCCAGCGTCTTTGTCGTTTCCCCCTAAGGGACGTTGCT
TGGGAGTGCTACGCGTGGTTTCTCCTTTGTCAGGTTTGGTGGATGCCAGGGTGGCGGCCT
CAGGAGGCTGATGTGCGTCGAGGCGCAGACTCTAGTAGCGATGTGCAAAGACATGCTCCA
TGATGCTAGACAATGGCTCACACTTCGCTTGGATGATAGGTTTTTTGGCTCGGTCGACAC
ATCCGGTCCAACTTTATGTTCGGGCGAGGACTATAGATGTGGTGGTGTGTCGTGCATGGT
TTGCGGATGGTTGCCCTGACCGGCTTGGGTTGTACATCTTTATCTAAACGATTTTATATT
AATTTACAGAGGGAGTAGGTGGTTAGTTCTTGTGGCATTACAGCTTGAGGGTGAGCGGTC
GAGGTAATTAACTAGAGGACAGTTTTCTTGTTAATTAATTAAATGGATAGAGCTTTTGTC
TTTGCCTTCGCCTTTTAATATAACTCTTTCACTCTGTGTGTGGACAAACGCCGCATGCGA
CCTTGTCCAAGCATCGCATGAGCCGGCACCAAAAGTTGCAAATTACAGCTCCAATTGATT
TAGCAACAACATGCTTCTCTCGAGCTGCTCAGCGAAGCAACAGTCCACCAGCACACAAGG
TTCTGCAATCCTCGATCCGAAGCTGCTAAAACTCATAGGAATATATGGAAGCGTCATCGA
TCGGGAGCAGCGTTTGTGAGCCGAAACGTCACAAGGATCTGTGACAGGGTTGGTCGATCG
CCGCCATGGTTTCGGTTCCGACACCGGACGAACTCGGATGCGCGAACGCAATCACGGCGG
CGCTTTATATGCCCCCCGCCCTCTCACCACTCCCAGATGGCGCCACATCGTACGTAACGT
ACGTACCTACCTACGCGCTCTAGTTCCGGGCGGCCGGCGACGATGGCGCTCGCATCCTGG
CTCTGCTCCCCTCCGTCCCAGCGCGGCCTCATGCTGAGAGACTCCTTGTTCCCGGGCTTC
GGCGTCGTCGGCAAAGTCTACAGCCCGTCGTCTCGCGGGCGCTACGAGGAGTACACGTCG
CAGGACTACACTCCGTCGTGCCCTCCGCCGTCGCCGGACTACGAGGAGTACACATCGCAG
GATCACACTCCGTCGTGCCCTCCGCCGTCGCCGGACTACACCTCATCGTGCCCTTCGCCG
TCGCCGGATTGCACACCGTCGTGCCCTCAGCCATCGCCGGATTACAAACCGTGGAGCCCT
CCTCCTCTCGCGAGCTCCAAGGACTACACTCCCTCGGCACCTCCGCCGTCGCCGGATTAC
ACTCCCTCGGCCCCTCCGCCGTCGCCGGGTCACACTTCCTCGGGCCCTCCGCCGTCGCCT
GACTACACTCCATCGGCCCCTCCGCCGTCGCCGGACCACACTCCGTCGGGCCCTGCTCGG
TTCGCTTTCCAGGCGACGCCTGCGCCGCGAGCCGCGTCCCCAGAGTACACCCCGCAGAGC
ACGCTGCTGCACCACCTTACCACACTCCGTCGACTCCTCCTTGGCCGGATTACACGCCCC
TCTACACTCTAGTGGTGTCTGACGCTGAGCCGTGCACGAATCGCCGTATTACACTACACG
CCGCGTAAACTGTAACAGGAGAGAGATATTCTTTTGTATATAGATGTGAGATCTGTTCTC
TGCTACTGTTTCCTGTTTTTTTCATGGCTGGAGCTCTTTGTTTCTGCATTCTGATCGATG
CAAATTGCAGTTGCCTATGTGATTTGTTGAAAATCACCCAGACACTTGTCATGTCTGAGA
CAACAATATGGATGCTCTGTAGAACTGAACCTTGCCGGAAGCTAGCACTTCTGACCATTT
TGATGAAAACAGAGCCGGTTACCTGGAAGAAATATAGGCATGAACATGCATTTACTTGTC
AATAGTTTGAAAAGAATTATTTAAGTAAAATCAAAATTTGTCTCAATAATATACAAATAT
ACTCCAACTGAACATCTCTAAAAATTCTAACTGAACAAAAGATAAGATGAACCCTTTCTG
ACTAAAAGCATGCGACATTGTCTCAATCACATATTCAGGACTTTGCGACAAACTTGGATA
CTCTGAATAGGCCTGAATATGTGATGTGTAACACATATCCAAACTCCAGATCAGAGTTAC
CGCCTTTTTCATCACAAGAAAGGGGAAAACTTTTATGACCTTCAGGCCTCAGGCTTGTTA
TTTTAATTTTGAACATGGCATCATCAAACAACAGAACTACAGAAGGGATGAATTATCCGC
ATTTTCAGTAATAGCAGGTAGGGGCAATATCATTGTGACAGATATAAGTGAATACCACCT
TGCTTTTCAGTACGAAGTTTCAAGTGTACCGTATCAATTGTCAGCTGAAATTCTCAGAAG
GCTGGTACTTTACCGGAAGCAATTGTATGTGCTCTCTTAATTTCCCTTTCCCTGAGAAGA
GAGACACAATTAACGAAATCGTGGAAACATCAAGTGACAGCTGTTTTGCATCAACTATAG
ACAGATAAGTTGCAGCCTCTACAACTGCACCTTTTTCCAGCAACACCCTGACTGCTTGAT
TTAGTAGTCTGGGACTTGTGTTTTGATCCTGTCTCTTGAGCAACAACGGACGGCCCACAT
TTTCCTGGAATCTAGTAGCACACAAGATCTCTCGTCTGTGAGACTCATGTGCCAAGCAAT
TTTGTTTCCCTTTGATTGCTCAAAACTGGAAGAGTTTTAAGCTTTTTGGCTCCAGAACAC
TGTCAAAATTCCTCCTGTTGGTGTGGAGCATTTTCAGAACATGCTCGCCAATGGCATGTC
TTCTCACTTCCAGTAAATCTTTGGCACCTCTTCATGTCTTCACACCACTGAGAACAAACA
TCGGTTGCTCAGGCAAATAGTGTCTGAAACTTCACTCTTCTCTTGATGCTGCCAGATCTT
TCATACCCAATGCCTATCTTACTATGCACCAGCTTGACAGCTAGATCAGTATTCCCAGCT
TTCCTGAGTGCGTTGATCATCATCGTTCGAACCCTGCCAGGTATCTCACGGCCCTTCTGT
ACGATGCCATCTGCCAATTTGCAGGCCTGCTTGAATCTGCCGGCCCTGCACAGAGCATTG
ATCATGTCCTCGTGTGCCGTCTCAGGAATCACACCCATTGGAGCCAGTTCATCCAATATC
CTGCATGCCCGGCTGAATTTGCCAGAAAGACATAGGCCGTTGGCAAGGGCTCTGAAGGCT
GCAGCTGTGGGGGTGATTCCCTTATCGATCATCGCATCCCAAAGCTTCAATGCCTCCTCA
TTCTTGTGCTCCTTGAACAACCCATCAATTAGTATGGTATACGTGTAAACAGTCTGATCG
CAGCCATCAGCTTCCATTCTCTTGTACAAGGCGCAGGCATCATCCGTCCTTCCAGCTTTA
GCCAACCCATCTATCAGCACGTTGTAGCAGTATGAGTCAGGCACAAAACCTTTAACTTTC
ATCTCCTCGAAGAGCTCCTGTGCTTGGTCGACCATTCCAGCTTTCCCAAAGCCATCAATC
AGGCTTGTATAGAAGATAGGGTTCACTGCAATACCTTTCGCCACACAACTCCTGAAACAT
GAAATGGCCTCATCCAGCTTCCCAAACCGGCACAAGCAGTTAACAACCACTCCATATGTG
ACGGTATCGAGCTCAAGCCCACTACTCTTCATCCTCTCAAAGAGTGACATTGCCTCGGTC
TCCCTACCAAATTTGCCCATCGAATCGATGAGCGCAGTGTACATGGCTGCTTTGGCTGGG
CAACCACGCTTGAGCATTCTCTCGAACACGGCCATTCCCTCAAATGGCTTCCCATCCTTG
CAGAGCGCGCCAATCACCAGCACATATGCATGCTGCGGAATCTCCTTCCCCATTCCTCTC
TCTTCCATCTCTTGGAACAATGCCACACACTGTGAAAACGTGCCCTCGCTGTAATGGCAC
TGCATCAGTGTAAGGTATGTTATCTTGTCGGGCGAGAGCTCCGCCTGTTCCCTCATGTGA
TCGAGTCTTGCCATCGCATCCTGCACCCTCCCGGCACGGCAGTACCCCTTGATGAGAATG
TTGTAGGAGACCACGTCAGGGCGAACTGGGTCTTCCGTGGACATTGCGTCGAACACGTTG
ATGGCGGTGTCGAGGAGGCCCGCGTTGACGAGGCCGTCGAGGAGGCAGTTGTAGGTGACC
CTGGACGGGTCCACACCGGCGAGGCGCATGCCGTTCCACGCCCACAGCAGCTCGTCGGCG
AGGCCGAGGGCCGCCAGGCTGCGGACGAGCGACGCGGACGACGGCGGCGTGAGGTGCCCC
AGCAGGCCGTCCCCGCGGGCGCGCAGCTCGGCGACGAGCTTCCGCGCATGGCCGGCGGCG
TCGGGGGTGGCCTCCCTGGCGTGCGCGAAGGAGTGCAGCAGCGAGACGTAACAGCCGAGG
AGGTGCTGCGGGTGGGCGGCGAGGTCGTCGGTGCCGTTGGGCAGGGCGCGGAAGAAGTGG
AGCGACGGGAGCGGGTGGGAGAGCAGCTGCGGGGAGCGGAGAGCGGCGGCGACGAAGGCC
GGGGAGAGGCGGAGTAGGAAGGTGCGGCAGAAGGCGCGGAGGTCGGCAGCGAGCGTGGCC
GGGGGCGCGCGGAGGACGAGGGAGACGACCCGCGGCAGCCATGGCGACGGGGTGGGCGGG
GCCGCCGCGGCGGCCGTGTACGGGCTCGGATCGGCGAGGTCGGTGTACGGCTCGATCCAC
TCCGGCGGCGGGTGGCCCGCGCCGTGGGGGGTCGACGGCAGGCGCCCGCGCGGGATGCTG
CAGAACCGCCGCATCGGGGAGGCGTGCGCACAAGGTGTTCGACGGAATGAGTTGAGGTGG
AAGCAAACGTTTGTTGGGCGCATACACCTTGGCTTTAGTTTACCAGACGAAAATAAATCC
ATGACTACATTGTATACTCCCTCCGTTTCTAAATATTTTTTTAAAGATTCCAGTACGTAC
TAGATACGGTATATAGACTTATTTTATATTTTCTCTGTCCCAAACTAAGTAATGTAAATT
TAATATTAAATTAATATAAATTTTGTATTAAAGCAGCCACACTTATTTTGAGACGAGGGA
TAGTATATAATCATTCATTTTGCTCTGTATTTAGTCTTTAGTAGAATCTTAAGAAAAATT
ATATCTATGAACGAAGGGAGTATATGACCGGTCCATACTCTAAAATATATAGACATTTGA
TTACATTGTAACATTGATATCTCACTAAAAAATAGGATCACTCATTGTTTGATTTTAGTG
TTAATTTTTTTTACTTTTAGTAGAATTCTCCCGAGTTGTTCGATTGAAACTCTCTCTCTC
TCTTGGGTTGCTTGATGTTTAGCAAATGTGAACTAAAATATAGCTTTGACTATATTGTAC
TCCCTCTGTGAACTTTTATAAGATGAGTAACATTCATCTTTCTCTAACAAAAAATATATG
ACATTGACTACAGATTTGAGCATGGCACATCTGGAAACTCGCAAAAAACCGTGTTTGTGT
TTGTGTTTGTCTTGCCCTGGGCGTTGTAACGTGCTGATGAACTGACAGATGGGTTGAGCT
AGCAACAAGCTCTAATAACAAATTAGTACTAAGATGAGAATGAGACGGTTGGAATTCAAT
TTAGATGGGCGGTGGGTCGTCCCACTGCAGGACGGCGGTGCCGAGGTTCTGCTCCTGCTT
GAGCTTGTCCTTGAGGAACCAGTCGCACACCCGCCCGGCGTTGAGCTCCTCGATCGCCAC
CCCCTCCTGCTCCGATATCACCCGCAGCAGGTTCAGCGACGATATCTGACGAATCCAAGA
ACAAGACAGATTATTAACATTTCAACAATGGCCCAAGCAATCGCACAGCTGACTGAGATT
ACGGCGGCGAACGACTCACGGTGAGGCGGCAGAGGAAGCGCTCGTGGGTGCTGAGCCCGG
ACATCTCCACCAGCCCGGCCTCCTCCAGGCTAAGGAACGTCCGCTTCTCCTGCTGCTGCT
GCTTCTTCTTCTCGCCGCCGTCGCCGCCGTCACCGCTCTGCTGCTGCTGCTGCTTCTCTT
CCTGGCACCTCCTCCTGACCGCCATTCGCGACGCCGGTCCCGAGCACACAGTTACTAATC
ACGAGTGCTGGCAGTGATTAGCTAGCTGCATCTAGGTCGACGCAGATGGCAGATGCGGCG
AGCAGTGGGTCAACTAGGTACCTGGGTTGCGGAGGAAAGCTGGCCGGAGCGAAGACCTGG
GCGGCGAGGGCGCCGCCGGCTGCGCCTGCACGGCGTGGGGCTTGCACGCCGTCGTCATGT
GCTGCTGCGTGGCTCAGATGAATTCGGGCGCGCGAGCAGATAACGTTTCCATCGCCACGT
CTTGATTTGATGATTTCCCCTCTGAATGGGAATGCTTCATCCGTAACACAAGGCTAGCAG
CCAGCCAGCCGGAGACCTCCTCCCCACCAAATGAAAAAGTTGATGCATCTATACTACTAA
TAAAAGATCCAACGAAAACTTATCTAAGTACACACAACTATTACCCACACAAAAACAAAC
ACCAATCACCACCACTCAATTAGTCAACAAATTACAATCTAA
