morexGenes - Barley RNA-seq Database

Contig contig_139046

Source Contig contig_139046

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_139046 (4355 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_139046

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7341	1	187 bp	AK373742	Not available	Available	None
MLOC_7342	1	436 bp	AK374121	Available	Available	None

CDS Structure of MLOC_7341

CDS Structure of MLOC_7342

Contig Sequence (4355 bp)

>contig_139046 4355 assembly3_WGSMorex_rbca.fasta
AGCGCCCGATGCGGCCGACGGGGAACTGGAGCCCGGCCTTGACGGACCTGGTCACCGCCT
TCTTCCTGTCGCCGCCCTTCCTTCCGGCCATCTTGCTTGCTTGCTGCTACTCCGGCGAAG
AAGAAACCGGTCGGGATGCGTGGGCGGCGGTGCGGGTTCGGAATGCGCTCTGCTCTGAGT
TTGTGGGTTGGGATGCCGGCGAGGGCGCGGCTTTTATTGGGGAGGTGCACGCATCGTGGG
GGAGCGATCCGCGTGACGCGGTGTGCGTGCCGTTGGATCTGTGGGGAGTGGGCGGTGTGG
ATTTGCTTGGGGCTGCGATCCGTGAGAGGGTCCGAACGGCCAATCAGAGCGCAGGGATTT
GCATCATGACGGGGTTCGGTTTTAATTAACGCCTGGTTTCCTTTCGTGCATCATTTAGGC
ATTTTTTGTTCACTCTTAGTATCTTGCATCTGATTGGTTTTTGAACGTGTGTTTGCTTAT
ACATGTATGCATATCGTTGCGTTTGGATGCGTGTACAAAGAGCCCAAGTTGGATTCAGCA
TTTTTCAAATTCCAATCCGGTTGTTTGGGATCGTGGAAAAGTTGTGTGAAATAGAATGAA
TACATGCGAGGAAATAGTGATCCTACGTTTTCGAACCCTTCCGCCTTAATTTGCGTGAAA
AACATCCATCATGCAAAGGATAGCAATTTGTTTCTTTTTTAGAAAAAAACCTAATTTAAA
GCGTGTGCACGTGTGTGTTCCCGTGCGGTGGGGCTCGTGGGCCAGGATTCCCGCTTCCTT
CGCTATCCCGCTACATCAAAAGTACTTGCTACAGTATGCTACAATGTTATAGTACGTCAC
AGTGCTTTTGCAACTAGCACACATCTTCTATTTACAGAATAATGTTGATTGCATTGTTAT
GTTATTAAAAAATCAGCTGGGTATAAACAACAAGGCAAGTTTCATGACAACTTAACACAA
TTAATCTGGTAGGCAAGTACAATATATAATTATGCCAATTGGGTGTAATTTTTTGACAAC
TAGTAAATATTAAAATGACAATTACAATAAAGTGGGTGTGACAAGTGGATATTATAAGCA
ATGAAAAGTTTTATATGACAACATGGCAACTCGGTAGCATTAAAATGACAAGCACATAAA
AAAGATTGTCGCAAGTGGATTTATAAGCATTAGCAAGCTTTATAAGACTACATGGCAACT
AGATAGCACTAAAAATGACAAGCATAATTTTTTTTTGCAACTGGATTTAAAAACACCAAC
AAGCATTGTACGAAACAACATTGAAATATGGTAATTAAGTTACTTCTCTCAAGCAAGTAA
ATGATTAATAACATGGCAAGTGTGTTAAACAATGTGGCCGGACATAAAAAAAGTTGTCGA
AACATATTGATATGGGGTCTAGTTTTGAAGAGCTCGTCGCGAGAAAATCAACAGTGAAAA
CGGTTAATCAATCGAATTAATGATTTTGTAGATAAAACTTTTTAAATTTCAAATACTAAA
GAGAATCATGATGCATGCATGCATGATGAAGTTAGGAAAAATTAGGGTCACCATAGCAAT
ACATTAGTCAGAATACAAGCGTGGTGGGCCATCGGACAAGATGCTTTGTGTGTGTTCCAG
CTTGATTAGCCCAATATGCAGCTCATTATGCGACGTGAAGGAGGATTAGCGAACGGTACA
TGCATTAGCGTTACTATTAGCGGGCGCCGCACAGGAAGCCTCTGGTGCGGCGCTGCTACC
TAGCGACGTCCTTCTTTTTTCCCACCAACAGCGGCACCCACGTAACCTCCTCCTCCTACT
CCGGGACGTGAATCCTCGATGTCGCGGGTCATTCCCCTCCTCCAATGCCCCCCATCTCCT
CCTCACATGGCCTCCACACCCTGGGCCTAGTGTATGTCACCACTTCTCCTCCAGTATTAT
GCATATGACACACTCTTAATGATGCATCCTGAGTATTAAAACTTGTTGAAACTCAAAGGT
ATTTTGACCAAACTTGTTGAAACTCGTTGACACGATAGCACCCAAGTAACCTCCTGTGCT
CCAACCCCTCCTCTTACTACTGCGGGACCTGAATCCCGACCTTCACGGAGCGGGTCACCG
CCTTCTTCATGTCGCCTCCCTTCCTTCCGGCCATCTTCTTGCTTCCTACTTCTCCGGCGA
ACTTGAAACCACTCGAGATGCGTGGGCATCGAATTTGTCCGTTGCCTTCGCCCCGCCGCG
TCCCGCCCCGAGCTCGCCTCGACGTCAGCCGGTGTAGAACGACATGCACGCGACCTGGTC
GACATCGTTCCCGCGGCGCAATAGCCTCGTTGGCGGCGACGCATCGACCGAAGCAGTCGA
CGGTTGCGTCGGGCACGGGGCGGCTCCCTGCGGGCACGACGAGGAAGAGCGCGTTGACGA
GGTATGACGAGGTAGTCCGGTCCATGGCGGGACAACAACCCGTGCTCCATCTCGCTTGGA
CACACGCGAGGTGATCGAGCGGGGAGACGGTCGCATCGGAGCCTGAGGTGGTCGAGCTGG
GCGACGAGCGCGTCGGCTCAAAGGCGGACGAGGTCGACTCGTAGAGCTCATGCTCTCGTG
CCATATAGGGACGAACTCCTGTACATGCAGAGCCGTGTGCAACTACATGTGAAGGAGCTC
GTGTACACGCTTCATGCGAAGGAGCTTCCGTGCCTGCCACAGTGAGCTCCATGCCCTGCA
CGACCCGCGCGGAGTCTTGCGGGAGTCGTCGGAGCCTTGGCCGGCGCCAGTTAGTGGCAG
GAGAAGGAGGAGGAGAGAAGTGGGGGTGGGAGATTGTGGTCTTGCAAATATAATAAGAAG
GACAAAGAGATGGGTGGGTGAGAGATGGGCCACGCCGGAAACATACGAACAACGCAGGTA
CAAAACCAAATGCAACCCAAAATTAAGACGAAAATGTGTCCAAACTAATCCAAAACGGAC
GCAAATTAAAAACGGATTGATGCGTTGGCCACTCATCTCTGTCCCGGCGGACCCAAAAGA
CATGGATGGACGAAATGGATCACCCGATCAGAGTTGCTTTCGTACAAGACGTGAAGTGGC
CCTCTCGTTTGGACAAGAATTGCCCCACTGTGTTTCTCGCTCTATCACAACACGTGGGTG
CGTGCTGGTGTGCTCCCGTGAGCAGCCGAGGGCTACTTCCGTCCAAAACAGCCTCACAAT
GCTTATGCGCACTACACTTTGAAATCTAGGCAAAAAAAAAAAAACGCACTAGAATATGAT
ATTTCGAAATCTAGGCAACGCGCTAGGATATGGAATAGAGGGGTATGATGATATACATTA
TTTTATTTTGAAAGCAAAGTTACATTCGGCGCTAAATGTAAAAATAAATAAAAAAGGGCC
AAGAATGAAACCTGTGACCATTCACCGTAGATTACATTTTGTAGCCTTCTTTTTTAATCT
GAAAATCGTGTTTTTTCTATTGATGAGCATGAAGTGCGGTATCATCAACTTACTTATGTA
CCCAGCAATCTTGGCCCTCCTCGGGCAAACATTATTCTACTGGATAATTTGTCATTTGAA
GGGCCTGACTACTCCTATCTCTGCCCAGTCCCAATATCTGATTCTGTTTTCGGTCGGTCC
GAAAGCCTAAAGAACATCTCATAAATCAGAGCCTTCACGAATCTAGTTTGTAATCTAGCA
GGCTAGTTTTTCAAACCTGTGATTTGTTATGTATGTCTGGCCATCCAAGGTTCAGTATGG
GAGCTCAACTCAAACCGGAAGAATTTTTGCTTTATGACCGGCCCAGCTACAAGGGCAAAT
TACAGAGTTCAATTCTTCCGAATGATGTTTCTTTGACATCCAATTTGACAATTACTAGCA
TATGTTTAAGCATCGTCAAGCCTTAATTAGCCATGTTCGCCTGCAAGATATCCAATTTAG
CACTGTCATCGTTTTAAACTGAGAGAGGCAACGTTCAGAAGATCAATTGAACACCAAATA
TTTCAGAAGCAAAGGCAGGTAACGAACAATCACACGATTGATCACGGGTAAACAAGCGAA
CATGATTGAAAGTGTGGCATCTTCAGTCATTGATCAAATACTAAATCACAGGTAAAATAC
AGTCCTGACTGGCCTGTTCATCGAACAAATGAAAGAGCAAATACACACTGGCATTTACAT
ACATGATCCAATCAACCAAAAGTCTGCTCATCTTCTCCCTGATACCGAACTAAGTGTCAG
CTAGGCTACTCCTTGGCGGCGGCCTTCTTCTTGGGGGACTTGGTAGCGGTCTTCTTCTTG
GGCGACTTGGTGGCCTCCTTCTCGGCGGCGGCGGCGGACTTCTTGGGGAGCAGCACGGAG
TTGATGTTGGGGATCACGCCGCCGTGGGCGATGGT