morexGenes - Barley RNA-seq Database

Contig contig_139042
Source Contig contig_139042
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_139042 (6234 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_139042

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7337	2	1270 bp	MLOC_7337.1	Available	Available	LOC_Os07g42300.2, FRAME:-1, EVALUE:1e-85, 13107.m04415 protein elongation factor protein, putative, expressed
CDS Structure of MLOC_7337

Contig Sequence (6234 bp)

>contig_139042 6234 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCCGGTCAACCATATCGATTCTTTCACCTTTGCTGCTTTCTTAGC
TCTCCGTGTCAACATCTTGGGAACTTCAATTCCAAATTTTCGCTTTGTCTTGTCTACCAA
TGTTGTAACAGTAGTGTTTGGGTGAGATCTAATTGTCTCCAAGAAGTTCTGTCCTAGCCA
CTTTGAGCTAACTTTAGTATGCTTGTCACTGGTTGGGCGAGTATGATGTCCTCTAAACTT
CTTTGATACAGAAGGTTTTCTCATGCTTGATTTGAGAAGCAACAACGTAAAAAAGGACAT
CCATTGTCATTATGCTCACAACACGCACTAACCTTGTCTTTGAAGTTCATGTGATATCTA
AAATACCTTAGTTGTTTGATATGAAAGTTAACAAGAGCACTCCTAAACTAGTACACATCT
TTGAAACGTAGCTTTAAACAAAATTGTTGTTCTGGATTAAGTTTGGTTTCATCATACCAA
TTTCTTTCCTTTCTGTTATTTGCTCTTGTTATCCTTCGTGAGGAAATAATGAAGGGAACC
AGTCATGCTCAATGGGATCATTTGCTCATGAGTGTGATCTTCTTGTTAGCCCTACTCTCT
TTCCAGTCTTGAACACATGGTGTAGTTTTTCCTCTCCCTCTTCACTGTCGTGTACATGTT
CCTCTTCATTTCCAGCTTGCTCAATGTGGTCTTCCTCTTCCTGATCCACAGGAACATCAT
AAATGTCCTGTGGTTCAGTGTCACCCTTACAGTACATTGGTGCATCGGGAGGTGCCATTG
TTTGGATGTGCTCACAGTTCACACTCTTCTGTGTGAGCATGAGTAAGCAATCGTATGTAC
CTAACAAACAAATCCAACACACTCTTCATATGTCTTATGGGCCACACCTTGTTCATTGAC
CGTAAACACCAAAGAGGGATCAATTGTGTTTTCTCCATCAGATATGTCAATCACTATTGC
CTTCCTATTGCCCTTCTTTGCTGGAGAGACAACTATTGCTTGCTCCCTCTTGCCCTTAGT
AACTAACAATCATATCCATCAGATGTCCCCATAGTGCCTTAGCATTTCATCAACCTTCAT
TTGATTGTCCAGAAGCTTAAAACCATCCAGTCATATCCCTTTATTTTTCATATAATACAT
GCACTTTGAAAACTATAACCATTCTCAAGCACTAGTGGCATGAGATAGAAATATCTTATG
TCCTTCCTAAACATCTTAGTTTTGATTAATTGTGTCCCTTCAAAGTCAATGTGAATAACC
CACTACTCATAGTTCAATCTACAGTACAAATTAAATATACATGTAAATACAAAGAAAGAC
ACAACCTAATATACTTGTAAAACCATACACTAAATCACAATGAGCACTGAAGAGAATGAG
GAGACAAGAACCCTATCGCAAGATAAATCACACACGTGACAAGAAGGATGACGTACACAT
GGGGGTTGTCGACGGTGACAGTAGGGAGGACTCCAACGGCCCACGTCGTCGCCTCTACAA
ACGGCTTCACATGGGAGGGAGATTGTGATTCACCATCATCGGATCTAGAGCCGCTCGTAC
CATTCACCGCCACCTCAACTGGCCTGTGAGGGGGGGGGGGTCCTCCTCCTGCGACAACAC
ATACTCCAAGCCAAGAAGGTTTAGCCGACGGCCAGATCTAGAACCACCGTCGTCATCGCC
ACGAGTCACCATTCACGCCTGAACAGGAAAGGTGAGATTGTGGGAGGGGAAATGCAAATG
AGGGTTTCAAGGGGAGAAGACAGGCTTAAACAACGAGTGTGGGCGCACCGTCTGTCCGAG
CACACGTGGCTCCAACAGGTGGGCCCGCATTATCAGTTTTAGTGTTGATGTGGCTAGTCG
CTGGTTTAATGTTTTTTTGTTACTCACTTGCCACAAAAATGATTTTCAATGGAAGTGTTG
AAGTAAACATAGAACTGTGCATGGATATGGAATGAAAAAGGACCTATTGTTTTGAGGTAA
AAAGCATTTAAAATATTCAGAATGCATTATGTTGTAGAGTAGATTTTTGTGTAGTTTGAA
CATTGAGCTCGCTGCAAAAAAGACAATTCAAATGTGTGAGAAACATTTGCAAAGCACACT
ATTTATGCCTTTTGTCTATTTGCCACAGGCTCCACGAATGTGCAAACATCATAAAATTTA
GCAAGTTCATACATAAGAGCATCTTGCACCACAAAAAAATTTGGATCTTTTGGAACACTT
ATTGTAGTCCAAAACGCGGTACTGTTCACCAGATTCATATGAGCCCAGGCTCAAAATGAA
TTACCGCTTACTTTGACCCAAACCAAAGACAGCTTAAATGCCGTTTGGCAGGCAACTGAC
TATATTTTCCTCCTGGGATTGGTGGAGTCAACGGTTGTGAAACAAGTTAAGACGATCAAC
AAAGAGAAAAGTAGGCAGGCCAGACACAAGAAAATAGCAACAGGAATCCAACCACATTGT
CTCATTTCATACGATGCAAACAACACTCAGTAGTAATACTACGACAAAACTCAACCTAAG
GTCCAAAAACCTCACAGGGCAGAATATGTTATGCTGCTTTAGCTACGACACCATCATGGC
AACGGGAAACTGTAGACATATTGTTTGTGCTGCTGCATTGTCCACCGACCGCAATCACGA
ACCTCGGGAAGATTTCTGCAGTAAAACAGGTTTACCAAAGTTAGAGCTGATGAATCTAAC
TAATCAAAAGGTCCAAACCAGAACTAGAAATGGATAGTGTCGATAAAAGGAGACAAGAAC
TAGACATAGACACAGTGCTGGTGTGGTACGACTTTAAGGAGAATGGACAACATAACATAG
CATCTTAGATCAGCTGATTACAGCCAATGCAACTAGGATAGGAAATTAAACTAGCTGGAG
AAACTTACAGATTTTGTTGAAGGCAACAATGTCACAGCTCTGGATGTACTCGTTCGCTGG
TTCGACGCACAGATGGTCTTCAATCAGAGTGTCAACAGAGACAAGGTCATCAATGATGGT
CATCATAATCTGGAGCTTCTTGATGCCATATCCAACTGGCATGAGCTTGGCTGCAAGCAA
TGGCAAACCATCAACGTTACAAAACACAAGTATAATTATGCAGACAGAAAAATAATATGC
ATCACCAAAATTGAAGTACAAAGACAGTTAAGAGTAAGTGACATACAAGCACCCCACAGA
AGGCCCTCCATCTTGATGCTTCGGACAGCTTCCTCTAGCTTGACCATGTCAGTCTCATCA
TCCCATGGCTTAACATCAAGCAAAACTGATGACTTGCCAGCTGACAACAGCAAAAGTACA
AAGTTAGTAGAAATACTGGGTTTTGAAGTTTAACAGCACAAACAGTAGCTTAAAACAATG
TTCATAAATAAGTACGACATAGCATATATTCTTCACTGATACTTGGTTATGAATTTTGAG
GGTACAAAATAATTGATTCAGCCATACAATATTAGAACTATTAAAATACAGAGAATGCAG
GATAACATACATTCTTTCTTCTTGGTAGATGCCTTCGCTTTGGCAGCACGCTCTTCAGCT
GCCTTCTTCTCCTCTTCGGTTTCCTCTCCAAAAAGGTCAACATCGCTGTCATCGTCATCA
TCAGCTGCAGGAGCCTGCAAAGTAGAGGATACATGATGTTATACTGTTATACTGGAAGAT
TTAAACCACATAAATGCCCAACAACCAGCCACATGAACCAGTTCAGCAGGTGGCACGCTT
ATGCAAAAGAAATTATTAGAATAGTCCAGAGCAGATGGTTTATGAATGTAACCTCAGCAA
CATCAGTAGTTGAGGTTTCAGGGACAATTGATGACAGAACCTTCACACCTTGACCAGGGG
CAGTAACTCCACTGAGCATGAATAGATTGTTTACATAAATTAGCATCACTTACAGGGACA
GCAGAAAATGAAAGGCCGTTTGGAATTTAAATTAGCTTGAGAGCATACCTCAGCTTCAGG
AGCGCATCAATGTGATTGTACCACCTTGCAACATTGGTGCAAGTCGATGGTGGAGCAACT
GAGAATTCAGAATACACAGCCAAGTCATCCTTGGAAGCTTGGTATCTACAGAAGATAATT
TTACAGAGTAAGTCTGATGAAACAAATACAACCATTTAGTAAACAACTATGGCATTAAAC
ACATACCCAGAGATGTAGCTGCGGGACAGAAGGTAGCCATCAAGCTTTTTAAGGCCTGCC
TCAGCGTTAACATTGAAGGTAGCCGCCATCTTGCCTCAAAAGGATGGAAAACAGCTGATC
TACAGGCAAAGAAGAGAACGATGTAAGAACAGTGGATATTGGCACACAAACTGTGGAATA
TAACTTGGAAACCACAAACCAGTTTACACTAATGGCATCCTAATTCTATCTATGTAACAG
TACTCCCAGTAACTCAAGCAGCAATCAAGCAAATGATTTCAATAGCAAACAAGGGAGATT
TGTAGGGAACTAGCGAATCAAATTGACACGCAAGAGCAGCTACACAATTAGACAGAAGAG
GAACACCTAAGAACGAGCAGGGGGTTATCATATGCCTACACAAGATGCATCAACACTACA
AATCTTTGTTTGAAATGACATAAAGCGTAAATTCGGATGCAAGAAATTGACATGGTACAC
ACACCGATAGATAACTGACTGACATAACATAACTCGTTTCCAGATAAATCACGCACAGGG
ATGTAGTGCATTCAAAACTAGGTAGATAGGGGTAAGAATCATGCAAACAGACAAGCAACC
CAGGCCAAATCCATTTACTGATACTGCACCTTCACTGAAGCATGCGACGCGTGACCAAAT
TTGACGAACAGAACACACAACGCATCGGATCTAACCCCCCTAAACAGCATCAATAACCAA
CAAATCCTCCGCGGCCAATAACCGAGATCTGCTCTAACACGCGCCAACTGACCACGTACA
AGCGCCTCCAGATCGAAGACCAAAGCTGACACATCCACAGGATAATTAAGAAGCGGAACT
AAAATCATCACGCGATTCACCGCGAAGAGATCGAAGATGCAACATAGAACCAAAAGATCC
GGAGCAGCTACGAGCGGATCTACGGAACTGGTGGAAGGGGAGGGGTCGGTGAGGATGGAC
CGGTTACCTCGAGGGAGCGAGTCGAGGTGTGGCTGCTGGGAGGCGAGGAGGAGGACGACG
GCGCAGGAGAGGGGCGGATTCGAGAGGGTTTGGGGCCTTAAAACGGGGGGATGTGTGGTG
GCGTGCCTACGGTTTGATCTGCATCTCACGGTCGCCGTTTGCTTCGTCGCAGTTTTGCCC
TAGATCTGCGTCTGGCGTGTGGGCCTGCTAGGCTGTCTTAGCGAGAACCCGACCAGGCCG
GCCCATATATACGCGCCTAAATGCGTGTAATGAAGGTGGACGCGGAAAACCCTATTTGCC
GCGCGTTGCGATAAATTCTCGGGGTTTCGCACACAGAAACCCTAGCGATCGATGATCTGG
ATCAACCCATTATCGGTTGCGGGATTATAGTTTTCTAAATCTCCTACACTTTCCTAACTG
GAAACTTTATAAAAGGTTCTCCGAACCGTTTTCCTTTTTTTTCGTTTCTTTTTTTCTTTA
TTCGTTTCTGTTTTTTCGAAAATGTTCTGAATTTTATAAAATGTTTCGAATTTTTACAAA
ATGTTAGGGATTTTCAAACATTGTTCTTCAAATTGTAAAAATGTTTCGAATTTTCAAAAA
ATGATAAGAATTATTGTCCGTTTCAAAATTTTGTGCTCAAGATTCTAAAAATGTTTGTCC
ATTAAAAAAATGTTCACGCTTCCAAATTTGTTCATGATTTTTCAAAATTGTTCTCGGTAC
GAAAATTTGTTCTCAAGATTATAAAAATGTTCATGCTTTGAAAAATTGTTCGTGATTTCA
AATTTGTTCTCTGTTTCAAAAAATATTCAAAATTGTTTGTACTTTGTTTTGGGTTTTTTC
AAAATTATTCTCCGTTTCAAAATTTTGTTCTCAAGATTTAAAAAATGTTTGTGCTTTCAA
AAATTGTCCGCGCTTCCAAATTTGTTTTGGATTTTTCTAAAAATTTCACTATCTCAAAAT
TGGTTCTCAAGGTTCAAAAAATGTTTGTGCTTAAAAAATCGTCCGCCCTCCCAAATTTGT
TTGGTTTCTTTTAATTGTTCTTCGTTTCAAAATTTTGTTCTCAANNNNNNAAAAATGTCC
GTGCTTTAAAAAATTAGTAAGCATGGTGGAAAACTCAACCTCAGGTATCCTCCT