morexGenes - Barley RNA-seq Database

Contig contig_138884
Source Contig contig_138884
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_138884 (8430 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_138884

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7262	1	1264 bp	MLOC_7262.1	Available	Available	None
MLOC_7263	1	672 bp	MLOC_7263.1	Available	Available	LOC_Os03g44800.1, FRAME:-1, EVALUE:7e-22, 13103.m04826 protein DUF593 domain containing protein, expressed
CDS Structure of MLOC_7262

CDS Structure of MLOC_7263

Contig Sequence (8430 bp)

>contig_138884 8430 assembly3_WGSMorex_rbca.fasta
CCCCTTGTGGGTGGAGCCCTCCGTACACTCTCGGAGTCGTTGCCCTACATGGGTTTAAGT
CTCCACTAACATGNNNNNNNNNNNNNNNNACCTATCAGAACCATGCCAAAAATTGCCATG
TCAACCTCTTGTGTTTGATCTCCCTACCTTACTCCTTTACTTCACACTTGCATGTTTTAG
ATTCCACTGCTATACTCTTAGATATGCATGTGTAGGGTGTACTTGACTAGCCATAATTCC
TATAACTTGCCCACAACTAAAATTGGGAAAAGGTTAAGTTTTTATTGGTCAATTAGTCTA
ATCACCCCCCTCTAGACATACTTTTGGCCCTACAGTATTTTCCTGACCAATCTTAGTAGA
TGCAATCCTTTTAAATTATGGAAAGAGTTTGAGAACACTTTTCCACCAAAAGGAGCCCAC
TAATATGTTTGTGAGATCACCCTCAGGGTAGTAAGAGTCCCAAATAAGTGTCACCCAAGG
AAGATTCTCATGATTTAAAAACTTATGCACATGTTTCATGGGCAGGCACTTTTTATGGAT
TGCTATATTAAGGACCGCCAATCCTCCTTGGTTTTTAGGCTTACAAACTTTGTCCCAGGA
GACGAGAGCAAAACCATTATCCTCCATGCCATATTTTCTCCAGAAGTAATGCCTGAGGTA
CTTGGTAATTTTCTCAATGATTCCAGCAGGTAATTCGAGGGATTGTAAGAAGAAAGTTAT
AGGCTGGTGGAAACAGATTTGATGAGAGTAAGTTTATCCCCATAATATAACAAAGTTGAG
CAATCAAAAAGCCTCCTATCAACTCTTTTGAGAAGAGGAGATTAGTCATCAAGCTTTGGC
TTAGAAGTAGCTAGAGGAAGGCCAAGGTATGTGAAGGGGGAAACTGTCAATAGTGCATCC
CAATCTGACAGCCAGTCTCCGCAACTTGTCAACACTAATGTTAATTGGCTCCATAGCAGA
TCTATGAAATTTCACTCTTAATCATGTAAACATAGTGAAGTGCAACAGCAAATTCTTCAG
TTGTTCCACTTGAGCTTCTAAGGCACGCATAATAAGGATAGTATCATGAGCATATTTGTA
TTACTAGGAGTCGAGGCAAGGGTGATTTGGAAGAGGTTTACTCGTGAGATTGTTGTTCAT
GGTTGCATTCAAAATGGAATGAAGAATATCTCCTACCAGGACAAATAATAAAGGGGAAAT
AGGGTCTCCTTGTCTAACACCTCTTTTGCACTCGAATTATTTTCCACGTAGTCCATTGAG
TAACACCGAGGAGAATTCAGAGGAGAAGATCATATCCATCCACATAATCCACCTATTTCC
AAATCCTTTTGCAAGCAGAATCTGTCTAATAGATTAGTGCTCAATGAGATCAAAAGCCTT
CTCAAAATCCAGCTTCAGAATAATTATTTCCTGACCACAAGATTTGCATTGGTGAATGAA
TTCATATGTCCAGGCTAAACAATCCTGAATTGATCTTGATTTGAGAAAGCCATACTCATT
TGAATGGACGAGTTACAAGATCACTTTTTGGAGTCTATTGGCCTACAGCTTAGTAATGAT
TTTAATAGAGCAACTAAGCACGGAGATAGGTCTAAAATCATTTGGGGTAGTGGGACCATC
CTTCTTGGGTATTAGAGTAATGAAAGAGGAGTTAATACTTTGCAAATTTATTCTACCATG
GTAGAAGTCCTCAATGAGATCATAAAAGTCCTCAGCAATAATATCCCAACAGGCTTTTAC
AAAATTGGTGTTAAAACCACAGGTCCTCGAGCTTTTTCACACGGTAATTCATGCACCACT
TTATCAATTTATGCTTTTGAGAATGACACTTCTAAATCCTGTAAATCCATGTTGGAATTA
AGCAAATCCTCCAATTTTAGAGGGTTAAAAGTTGGGATAGAATTGCACAGACTTTTCTTG
AAAGCATTGTAAAGGAGGTTTGCTTTGGAGTTGTGATCTCTAGATGAATTTCCCAAATCA
TCTTGCAAACAAAAATAGAATTAATTCTATATTTGATGGTGGCCTTGGCTTGGAAATATT
CGGAATTAACCTCCCCAAACTTAACCCATATCATTGTTGCTCTCTGCTACCAATAGATCT
TCTGCCATTCCAAATGATTTACAACATGATGCTTGAGAAAATTTCTGCCACTGAACTCAA
TATCAGAAAGCTGCCTGAAATCTTGTATGGTGTCAAAAAACCGAATAACCTCATTAGTGG
CTTTGATTGAGTTGATTAATTGCGATATATTTTTAGACCATACTTTCAGACATTTTCTTC
ACTTATTGAACTTAGCAGTAATCCTCTTAGCATTATTTTTAATATGCAACTCCTCATCCC
AACTGTGCTTAACAACCTCCTTGAAACCCTTAGTTTGCAACCAGAAGTTCTCAAAACCTG
AATATCTTTGCCTTAGGGATATTAGTGCCAATTTGAATCAAGCAGGGATTGTGGTTTGAA
ATAGGTTTAGCAAGGGGAAGCACCAATGTGTTTGGATAATGAGTTATCCATGCTTGAGAA
GTAAAAAACTCAGTCAAGCTTTTCAAGGAGAGGTGTGGATTGCATGTTACTACAAGTAAA
ACACCTACCTTTCAATGGAGTTTCCACTAGGGCCAGTGAGTGAATTGCCTCATTAAATTT
TAGCATATCAGAGAAATTGCCACCAGTTATGTTTCTATTGTTGGGATATATGATATAATT
GAAGTCTCCCATAATTATCCACTTTGTATCATCGGGCATTTGGATGTGTTTGAACCAATC
AATAAAAACATCTCTACCAATCCCCTCGCAAGGCCCACAGATATTAGAAAGAACCCAGTT
CTCACCTGACATATTGGAGGTAAACCTGATGGAAATAGAGAAATCATTGGAGAAAGGAGT
TTCCCCCTCAAACAAAGCATTGTTCCACACAATTATAAGACCCCCAGAGGCCCCAATAGA
AGGAAGAAATTCAAAACAGTCTAATCTCCTAGGGCAGAAGTTCTTTAAGTATCTATAATC
AAAAGATTCCCTCTTGGTTTCTTGGAGACGAATGATGTCTGCATTAGTTTCATCAATCTT
GTTCTTGACAGCTGACCATTTAGCGTTATCATTGATGCCCCTCACATTCCAATTTAAAAT
GTTCCAATTTCTATTCATGATTAATAGAACAAAGTGAAATGTCAAGAGCCAGAGATGTGA
AAAGATGTGTTGGGAAGCATAGCTCCCTGTCAAGTTAGCTTGCAAGGACCCAATCCAATC
AAAAAAGGAGACCATGAGCCAAACAATTAGAGAGAAAAGTAATAGAACAAGCTATCCAGA
CCTTCATTATATTATACTCCCTCTGTCCGGAAATACTTGTCCAAAAGATTGGTATAATGG
ATGTATCTATAACTAAAATAAGTCTAGATACATTCATCTCTAGGAGGGAGTAGCAAAGTA
GTATCACCAAGGACTGCCTCCACATGGTCCAGATGGACATTACAGCCCATAGATTATTAC
AAGAACCAAAGTTTAACAAGTTCATTGACACAAAAGTTGGGCTAGGACTACTAGAGTTCA
CCGACTAGAACTAGAACTTGAAGACTAGAGCTCTCTCGCTATAACTAGTGCTTGAAGACA
GGGTTCTTCTTAGGTGGCCCTTTGGCAGCTTGGTTGGCCTCCTTCTTCCTTTTATTCTGC
TGCAGAAATTCCTTTGTGTTGTCCTTGGCAGCAACCTTGCAAAATGAAACAGATAGGTTT
TTAACAATTCTGCTTGAGAGAGCAGGAGGACTAGGTGAGCAAGGAGGAAAATTTCTATCA
TGACATGTCTTCCTTTTGAAAACAATAGTTGAAAACCTTACAATCTACAACTTCTTCTTA
CCTCAGTTTCAACCATGGGGGCTTTGTCTTTTGTCTTTCTTTGAGAATGAGCAGTTGAGG
TACTCACAACCAATGCAGGAGGGGTAGGGTCTACTTCCATAGTTACCGGAGTTGATGAGG
ACATCTCCTGATCAGAATTAGCATGGGAACAAATAAGCATATGCCGAGAAGGACAACTGT
TAGGAAGAGCAAAAGCTAGAACATATTTGCTATCAGATCCTTCAACAATATAAGTCCACA
ACAGAGAAGATAGAAGAGCCTTTCCCAATCAAAGTTTGCTCGTGTTAAGAGAGCCACAAT
GATGAATTTACATCAGACAAAAGGTACGTGAGTGGTTTAACAAGCAGTTTCTCATGGAGC
AAAATGCTTTTCCAAAGCTCCATCCCTTCCTTAGATAGGAAATTGCCTCCATAAGACCCT
CCCTAAGACATGTGTAGGGATTTCTTCTGTTCTAAAATTCTAAGTCTCATATCTATATTG
TGGGTCATATGCCTATGGACTATGGTAGTGTGGTGTGTTTGTATCTAGAAATCTGATCGA
TTTATAGTGAACCTCGAAAGAGGAACATGGGAGGCAAAAGAAATTGTGATTTATTTTTGG
GTCGCGATAACGTCCACACGTGTGGTGGGAGCAACATCCGTCCACACGTCTATAAGACAA
AGATTGCATCACGTCACCGCATGCATGCTTGTGGGGATTTTTTTTATTTCCAATTTTGAA
AAAGTTTTATCTCTTAAATGAAAAATCCGATTGGAGATCCGTTTTCATCATTAAATCCAT
TGCGACGAGATCTTCGAAACTTGACCACATATCAGTATGTTTCGACGACTTTTTGGGAGG
TTAAAAGTTGCCATGTCTATTGCACATGAATTGCCATGGTGTTTACAGTGAAGTTGCCAT
GATATATTTTAGGTATTTTTTTCTTCTACCTTTAAAAGTAAATTTTCAATGATTGCTAAG
AATTGCCATGATCCATGCATTAAATTTGCCGTGGTTAATTACTAAAAATTGCCATGGTCA
ATTAATAAAAATTGCCGTAAAAAGTAGTTGAAAATATAACTGTAGCTTTAAATCTAGAAG
AAAAAATAGATAAGAACATGTCATGGCAAATTTAGTGTAAACACTATGGCAACTACAGTA
TAAACATCACGGCAACTTTTGGCAGAAAAAAAATCATCGAAACATATCAACATAGGATCT
AGTTTTGAGGATCTCGTCGAGACGGATTTAATGATGAAAATGAATTTTTAATTTGATTTC
TTAATTAGGAGATAAAACATTTTGAAACCAAAAAACAAAAAAGATTCCAGCTGATGTCAT
CTGTTTTGACGTGGCAAAATACATGATAATGGAGGCGTTTGAGCGAGTTGTAAAACGCCC
ACACGTATGGGCGTTAGCTTTTTCCTTTTTTTGTTTTTGAATGTTAACAAAAATCACAAA
TTTGCATGGAAGTTAACTTGCACAATAAGATTATGTGTTTAAAAAAATTTGTTTTGAAGC
ACCAAGTTGAGAAAAACAAAGAGATCAGGCGAGTGTTCACCCTCGTCGACTGAACTCAAG
TAAGTTGATCTAATCTGCTCATTATCCGCAGCGAGCAGACAGGATCAGATGAAACATCAG
ATCATGAGAGCAGCACCTGTCTTTACGTGGAGCACATAGCCTAGGCTTGGCAACCACCAG
TCCACCATGGCCGTGGCTGGTACGTACTCCCCCCAGCCACAGCCAGCACCCCATGTTTCA
TCTCCGGCACTTTTGACCACGGAGCCACGTCCCAAAGCCTTTCGCAGCTCCCACAGCATC
TTTGCGACGGGAAAGAGACCCAATCAGCCAGCCCAGCAAACCGGCGAGGAGTAGTGAATC
ATTGCCGTCGCATGTGGGTAGCATCTTTGCGTGTCTCCCTTTTCCTGATCAGCCCAGATT
TATCAAAGCCAACTGTAGCTGCACGGTGTTGACTTTTGCTTGTACAAAGCTGTGGGCACC
TCCATGAGTCATTGCCATCATTTGGAATCTTGCATAGCAGATACGATTGATCGATGCCAT
GAGCTTGGACTCCGTGAGGAAACAGAACATCTGGTTGCTCTCTTGGACTCGGGGAAGACA
AGGTAGGAGTAACTCCTAATCTGAAGGCTAGTAGGACGGCATGGATTCAGAGGGAGGCTT
GAGACAGGGGTCGTCATGGTCTCACAGGAAGGAAGACAGAGCAAGACGACAGACATACGG
ACAGGCAGACATGCAGCAGAAAACAAATCAAAGTGCGTATGCAGACACAAGTACGTACCA
CTCTTTCTTTTAAACACGATATAACAAGCAGAAGTACGGATACGCGCTTGTTCACTCAAT
CACAGCTTCACATCATGCCATGCCAATCAATCATCAACACTAATAAAGTACTCTCTCTAC
TAAACAATCCTAAACTAGTCAGGAACTAAACCAGCCTTGCGTTGCATGCTGCTGCAAGCT
AGTTAGCTAGAGCTAGTAGATCACCGTCAGGTTACTACATGAAGTCCGAACACTACTAGG
AGCCAGCGACCAGCAAGCCAGCAACAAAGAAAACAAACATAGTTGAAGAAGACAACCATA
CTTGCGAGTACAGCACCAATATACTAGTATTAGACTATTAGCGAGCGAGCGATCGATCGA
TGTACAAAGGACGATGTGACTACAGACCCACGCACATACGCATAGATGCACGGGCCACGG
CACGGTGGATGTAGCCAAAACAGCAGCAGGTAGATCGATAAGATATGATTAAAATCATCA
TGATCGTCGTCAGATGATTCCTTGTGTCAACTTAATGTCCAGCATCGTCTACTCGACGGA
AGAGCTAGCCCATGCTCATGGCCTGCCCTTGTGCTGCGTGTAGATGTAGTCCAGGTGCGC
GTCGTGGAGCAGCCTCCTCTGCATGCACTCCTCCCCCTCCTCCCCCTCCTCGCACGCCTC
CTCCTCCGCCTCCGCCTCCTCTGTCGTGTCGCCTTCCGCCGTCGCCTCAGACGGTGACAC
CACCTCGCCGCCATTGCCGGCCTTGCCACCTTCCTCCTTGAGCGCCGCTGGGCCGTCCGT
TGTTGCAGCATCTACCGACTTGGCTCTCGCCATGCCGATACCTGCAAATATACAGCCCCG
TAAGGTTAACAATCTAAGCAACCAGAGCAGAGACCGAGGTGTACGCAAGCATGCAGATGC
AACACGAGAAAAGGTATTGGTGGTGCTACCTTGGTGAGCAGCGGTGTTGGCCGAGAGGAG
GCGAGCGGCGGCCGCGCTGTAGGAGAAGCAGAGGAGGAGAAGCAGGGCAAGAGCAGGCAG
CGGCGGGGAGGAGATACCGCAGCGTCCCGTCATTTTGATCTCGACTTCCTGCTTAAACTA
CACACACTGGGTTGGGCTGTCCGAGGAAGAGAGGAGAAGAGAGCTAGTGTGCTAGTGGCT
TCGGGAGCTAATGGCGAATGGGTGCGGCTGCTGGTGTTTGTGGTGGCGAGAGGAGGTATT
TATAATGCGGCAAGTGGAGCTTGTGATGGATGGAGCTCGCAACTTGCAAGTTGCAAGCAA
ACACAACAGTGAGGAACACACATACGCACACACGGCTAATATTTTAGGGTTTTTTACAGG
ATGGAACGAACAGGCACACGCACGCGCGTATAACACACGAGTTGATTAAGACTGGTTAAT
GGACCACGGGCGATGCTAAGCTTTCGATGTTTATCATCCCGGTTGTAGCTAGCTAGGGTA
ACTGCCGATACCCTCTTTGTTGTTTCGGTGCCAAACAAATCACAAATGTACGTACACACG
TTCGTTCATTGCCAAAGTCAGCTTCTTTCCCTCCCGTTGGCTCCTCAACTCTGAAAATGG
AAAACTTCAGTGATTTCTCGATCGATCCAGGTGACAAGATGCACACTAGGCGACTATATA
TGTGGTTCTTCTGTTGGGAGTTAATTACATAAAACCATCATATTAAAGCGAAGGATTGCA
GAAAATACTCTTCAAAACATTCGTTTTGGAAAAAACAATAACCCATCTTTAGAGTGTTTT
AAGCACGATTATGACATGTAGGGTCTATTTTTAGTGAAGTGACCCGTCACCTCGTGGCGC
TCTCTTCTTCCTTCAAGGACGATTGACCTAGTATATCCCCATCCTGACTGTGCTCGAGGA
GGCAGATCCAACGCTCCAGATCCGCGACTACGGCGTCCTCCTCGCTCCCTTCCTGGTCGT
CGTCGTGGCCCTGCCCCTCAAAGTCGTCGGCGTCGGGCAGCGGGATGCTGAGGCGGAGGC
ATGTTTGCACGGAGACTGGAGCGGGCGGGCGCGAGGCAGCGCGCGGCCGGCGACGAGGGC
GCGGAGGTGGTCGATCTCGACGGCGTCGAGGGCTATCTTCTCGTCAGTGAAGCGGCGGAA
CTGGTGCAGCTCCATCTGCACCTTGGCCTTCTCCCGCTGCAGGCGCATCATCATAACCAT
GGCCTCGCTCGCGATGCCGACCTCGACGAGGCCTCCTCCTCCACCTCGCCCCGCAGCGGC
GCCGCTGTGTCCTGCGCCACCTCCAGCACAACGGTCTCCTCCTCCGCCTCCACCCACACT
ACAACCCCCTCCCCGTCCCTATCCCCGCCC