morexGenes - Barley RNA-seq Database

Contig contig_138846
Source Contig contig_138846
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_138846 (6969 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_138846

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7234	2	988 bp	MLOC_7234.1	Available	Available	LOC_Os02g47000.1, FRAME:-1, EVALUE:1e-79, 13102.m05285 protein expressed protein
MLOC_7233	1	1486 bp	AK367055	Available	Available	None
CDS Structure of MLOC_7234

CDS Structure of MLOC_7233

Contig Sequence (6969 bp)

>contig_138846 6969 assembly3_WGSMorex_rbca.fasta
CCTCCCCTCTCACCCCCACCCCCCCACCCAATGTACCGGTTCTGTGATGTCCTTGGAAGG
TGTATCCAACATGGTGGCAAGGCGAACTGTGTTATAATATGCTCATATCATGATATATCT
GCAGTGCTATAGGAAAATCCGGTCTAACATTTTTCTTTTGACATTTTAGGTGGTCTCCGG
ACGATATTAACTGATCAGAATAAGCTAGTAGTAGCAGTTGTAGGCACAACTGCACTTGCA
GCTGGGATTTACACAACAAGGTAAAAATCATAGTACTCTCTATGTTTGAACTTTGGACAT
AGCGATTGGTAAATGACCATAAATTGAAAAGAATCCTCCAAGTGTATCTTGACCTTGTAA
AACTAAAGAATTAATTGCTTGAAACTGCTGTTGTGCATCCACTTGATGGCAAGTTGCAAC
TTCTAAAATGTACTCCCTCTGCAAAGAAGGAATTACTGTCATTCATGAATCAAATTGATA
TTGATACATGAGATGCTTATGTGAGGCAACCTAGTTGCGTATATTGAAGACAAAATGACT
CACATTGTGAATCTATGAGACCAATTTGTGCTACAATTATACTGGAAGCTATTATTTTGG
TTGGATTCTTGTAAACAATTATAAAGCAGTATTACTGAATACTGATTGCTCTTCTACCGT
TAATCCACTGTTCTTCATTTCATCTGCCTTAGCCCTTCTGGTGAAGACTGTTTTTTGTCA
AAATAAACATAGTTCTTGACCTTCTTATCCTTTATTGCTGAAACCCAATCTTGCTTTCTT
TAGCCCCAATAACGCAAATGATATTTTGTAGTTATATTTGTATTTTTCATTTGTGCATGT
GATGTTCTTATACAATTAACACATTTGCCTCCAGGGAAGGTGCAAGAGTAGTCTGGGGTT
ATGTTGACCGTATTCTGGGCCAGCCATCACTGATCAGAGAGTCATCGCGAGGGAAGTACC
CTTGGTCCGGTATCCCCTCACGTGCTATGAGTACTGTGACTAGCAAATTGAAAAATGGGA
GCAATCTGGGGAAGGATGGGAAAGGTTTTGGTGATGTTATTCTAAATCCATCTCTTCAGA
AGAGAGTGAACCAACTAGCTAATGCCACCGCAAACACGAAGCTTCACCAAGCCCCCTTTA
GGAACATGCTTTTCTATGGGCCTCCTGGCACAGGGAAAACAATGGCAGCAAGAGAACTAG
CTCGTGAATCTGTAAGTTACACAAGCCAATTCCCTGTGAGCACTAATGCAACAATTTGAA
ATATTATTAGTTCACTAACATTATGACCATTTACAGGGACTAGATTATGCACTGATGACT
GGTGGAGATGTTGCACCATTAGGATCACAGGCAGTCACCAAGATTCATCAGTTGTTTGAC
TGGGCAAAGAAATCTAATAGAGGTTTACTCCTCTTCATTGATGAAGCTGACGCTTTCCTG
TGCGAGTAAGTGATAGTCAGATCTTCAGAATACTTTTTGTTAACAAGATTCCGTGGTATC
ATGTGATTTTGCAGTATTTGATATTTCAGAAAGCATTTGAAATTGTCGTGTAATTGCTAT
ACATCAGCAGTAGAAGGGGTAGCAATGTGGTGGCTATTTGTATGCTCTAGAATTGTCATG
TCGCTTCTTCCTATGTCCGATACCACTGAGATATTGCTGCTCTCAAGTCCTGTACTTGTT
GGTAATATGTTTTGCCTTTACCCTACTGCATTGTTTGACATTTCTTTAATTCTGCAGACG
GAACAAGACGTACATGAGTGAAGCTCAAAGGAGTGCTCTGAATGCTCTCCTTTTCCGGAC
AGGTGACCAGTCCAAGGACATTGTGCTTGCACTCGCGACCAACAGGCCTGGTGACCTTGA
CTCCGCTGTTGCTGACCGTATCGATGAGGTTCTTGAATTCCCCCTGCCTGGGGAAGAAGA
GAGGTCTAAGCTTCTCAAGCTATACCTCGACAAGTACATAGTGAAGGCTGGCGAAAAGCA
AGGAAAGGGCTTGTTCAGCTTCTTCCGCCGCCAGCCTCAGAAGATAGCGGTGAAGGGGAT
CACCGACGAGTTGATCCGGGAGGCTGCTGCCAAGACCGACGGCTTTTCTGGAAGAGAGAT
TGCAAAGCTGATGGCGAGCGTGCAGGCTGCCGTGTACGGAAGCACGGAATGTGAGCTCAC
CCCGGGCCTGTTCCGCGAGGTCGTAGATTACAAGGCCGCCGAGCACCAGCAGAGGCGAAA
GATAGCTGGTCATGCCTAGGAGTAGATTGTTACAATGTTCATTTCTGGAGAGGGAGAGAG
TGCCTGGACTGGGGCCGGGTGATTCACCTGCCTCGTCTTGGCTGATTCTTTTTTGCTTGC
TATGTCCTGACACCTGGGCGGAATTTTGGAGGCTTGCATGTATCAACAACGTCAACATGG
CGCAGTTCACTTCAACAAGCTCGGCAATTTTCTGTTCTATTTGTCCACATGTACGCTAGC
CTTTGGTGGCGTGATTTGATTTATCATAATAATCTAGCCGTTGACAGTCGCTGTAACTTG
TGATTGGCCTTTTTGCATCTATCGTGTAGTATGAATGATGCGTCGTCGACCATCAGTGGG
GTCGATCGTCGGTATCCCGTAGGTTGCCTCAAACCCGCATAGTTTTCTCTCTGCTGCAAA
CTCTACTCGACCTATGGAAGACATCCTGAGTTTGCATACTCGAAAGTAACAATATCATAT
TGGTGACTTCCTGATGTTTGGTCCTACAAATGCACCATCTGGACAAACGAGGATCTAGAT
ATACTTAACCAGCTCTTTGAAAGGCCTTCAGGTACCTGCGCGTGTCTACCACGTTGGTAT
TATCCGGCAATGAATACTCCACACAGCCTATTATATGATGAGCAATGCTACACATACGCA
GAGTTACGTTTAGTTTTACGTAAATGGCCATTTGGCAATCTGTGATTGGAAGTAGGGGGA
AGGAGGGGCCCACCCTCGCTGCAATTCAGGGGGCCGAGAGAATGGATGAAGGAAGGTTAC
TTAACTCTGCAAGTAGCTGTTCATAGATGTAGTATTATTGTTATATGATCCACCCTCACA
TCGTAGGCCATTTTAGAACATCAAACGATTTTGTGTTATGCAAAGTCTATCCTTCTTGGT
TAGATATAAGAAAGGATACTCAAATGTAGAACCAAATCAGTACTGCAAGTTACTCATAGC
AGCAGTGCCGCTCAAAATGAATCCAACTATCCAAGAAACCCAATTTCATCTTCAACAAAT
AAATGTGATGGATGCAACTGCAGATTTCCTTTCACTCGTATATAAAGTGTGTACACATAT
ATAGAAACAATCCACACAAAAGCCTGTTGCTACACTTGCGACCGGAGATTCAACACGGCT
CCATTCAGCTCATAGCGGCGGTGATGGAAGATACAGCAATGTACAGATACAGTAATGTCC
GAGACGGTGCCCAGGCTCATTCAGCAGGGCGCTGGCTCTCAGGCATGTCACACTCGTCAA
GCAGCGCCAGGATGTTATGCTCAGGGGCGCTCACCGAGGGCAGTATGGCGCGCCTCCGGA
CCGCAGACCGTGACCTTGTGGCGCTGCTGTCGGGCTCCAGCTGTGACCCTTCCTTCACTA
CCGGGAGGTCTGTCCTCGGCCTCCCGCCCGCTGTAGACATCCTCTCTTGCCATATCCTCC
CATCCTGGAAACCATGAATCAGTGAAACCAGTAAGGGACCGATAATAGGCTCAAACTTTC
AAGTACTCCCTCCGGTCCTTTTTAGTCTGCATATTAGCTTTGTCCGAAGTCAAAGTATCG
CTACTTTGACCAAATTTAAAGTGTCGCTACTTTGTCCGGAGTATATGTAAGAGCCAGCAT
GTCATCATAGCTGTATTTCTGCTACACACGTCCGCTACCATGGTTGTTTTTTGTGTTAGC
CATATCACCCTCTGGCTGTTCTTGCTACTTGGCAGCGGACTACATGCATAGCACATACTT
ACAAACATGCAATCATTCATAAACAAGACAGAGGATGGCTTACATGCAGTATTGATGGCT
CAGGAAGCGGGCATTTCACTGGTTGGTCAAGGTTGACAGGCTCCACAGGGTGCTCCACCG
GCTTGAACTCGATGCCGACCTCAATGCCGTGTGGGCTATCTCCAGGATCAGCTGCCGGGT
CAGACTCCCCAGTCTCCATGTTGGGCGCCAATGTCTCCACAACCTCCTGCTCCATCATAA
CAAATTCGTTAAATTAGTATCAATTTCAGTTCCCAAAACTGTTACTAGCTCACTAGAGCA
GTTGGGCAAGACAGCCAAGAGGTAACTGAGTAGTACAAAAATTCCCACAAAAAAGAACTG
CTCTTGGACATGCAAAATCGATCAAGAACACTAACCGAGTAATACAAAAATTCCCACAAA
TTTGGCTGAGAAGGTTGGATTACAATTAGTATACCTAAAAATATCGAAGCTTTCCCTAAG
ATAACAAAGAATGTTCTTTTTTGTCTGAGGAATCAACAAAGAATGTTATGCTATGAAGTT
CTCGACTTCCTATTCTTCTCCCATACTGCACCCACATCATGGTGAGATTGTGAAATCGAA
ACCCGACGCCGGTTCTTGGCTGAATAATCCATGCAAACAAGCAGAGCAAGCATACAGTAG
GTTCAAATCTATCTCGAATCCTACCAAACAAACTAAGCTAAAAGCATAAATCATCCCCAA
AGGAATCCTAATTTGAAGAACTGGATGAGGAAAGGGGAGGAGCTACCGTGTGTTGGAGAC
CGCACCATCCACCCATCATGGGACGAATACGAGATCAATCGAAATACTAGCTCGAATCTG
AAACTTCCGCGACCTCGTAGAGCTAAAACAACGCAGCCTTTACATATCGTATATATACAG
GCAGATCTCTCCTCTGGGCAGGTAAACTAGGGAGCAAGTAGGAATAGAGAAAGGACGGGC
ACGATAGACAGGAGACAAGAAAGCAGGAGAAGGGGGAGCTCACGACGGCGCTCTTGGCGC
GGCGGTGGCCGGCGCCGGAGGAGAACCTGGAGAAGATTCCGACCATCGTCCCCGCGGCTG
CCGCCAACCGCCCTGGCTCGAAGCTTCCGAGCTTTTCTTGTCCAGGGGAGCGCTGATCGA
TCGAGTGATTGACCTGTCGGAGTGGCTTTAGCCACCTCCTTTTTTCCCCATCTGGCTTAA
ATCGCCGAACTGCACACGAATGCGACGGATTGGTGATATTGGGAAAGTGGGGTACTCTCG
TTCCTCTCAGACTTCATTAATTAATTGAAGTACGTATTAATTAATTACGCATAGTACATC
AAATCGAAGAAACCTAACAAAGCAGCACAAATCAAGCTGTATAAAACCTCTTATAAAATC
CAACGGATGGAGTAATAAATATCTTCGATAAATCTAAATGTTATCATCTGATTTTGAGAA
AAGCAATATTTTTTGACGATTTTGCACGGAAGTAAGGCCCAGAGGATAGGACTAACGTTT
AGATTTATCAAATCTGTACACTTCGCTCCTCTGATGAGACACTTTAGTAAGCTAAATGAT
GGCCCACGCTTGGTGCGGAAAATATGATGGACATATGCATAAATAGATGCTAAAGAATAA
ACCTATTGCAGAAACAAATTTAGGATTGCTCACAGTTCATATTATAAAACAATAAATCAT
ATAAAGCATTTGACAAAATGATGTATAAGAAACTATTGGATTAAAGTAAACGGGATGCTA
TTTTAATAAAAAAATGTGTAACATGATCTACATAAATATGTTCTAAGTGTCCAATGTATA
TACTGTTTATTCCCATACAAAAAATATTGAAATGTTTGGTAGATTAGTGCACAAGTTGTA
ACTTATGACCACATGCATGATTTTTATTAACACATGATCACATGCATGACTGAAGCAAAT
GAAAGAATAGAAGAAAAACAAGAAATGAAAAAACTCCCAATAAACAAAAAATAGGAAATA
TTTTTAGTTTTTCTTTTAATACTACAAACTAGATCAACAAAAAAGCAAAACCGAAAGAAC
GTGAAATATTTTTAGATTTAAAAAGAAATTCAAACACACAAGGAGAAAGGAAAATAAATA
CTGAACATGGATATACGATGAAAACGATGAACACCGGCAATTGGAATGAATGTGTGATAC
ATGAATGCAAATTCGATGATAATACGTATTCTCCCAAGCTTAGGATTTTGACCTAACTTG
GTCTAGGGCCATGGTTGGCATGGGTAGAACTGGTAATGGTAGTTGGGGTTGTACTTGAGG
GCGACATCTATCGTTTGATGAGCAGCTTCACTCCGTCGAGCGGCCTCTCCTGCTTCTTTG
TATGCCTCAGCATCCTCTTCGTGTATAGAATATCTTTGTTTTCCTAAAAGATAAAGAGGA
AAGGAGGAGACAAAGTAACATGGACTAAGCGGATCTTATCAAAGATTAGCCACTAACAAA
ATTTCAGGTCTTCCTTTTTTTTAAAACCTATGACGTACCATGGCATCATAATCAAGATAA
CTCAAGGGAAACTCTGATCATTTTCCTTAATAGCTATTCCAAGACAAGTAGCTATGCGTG
TGGCATAAATTCCCTCGAAAAGATCTCCATCGAAAGAATTCTTGTTTAAACGACGCGCAA
TTATAGCCCTAAGATTAAATTTTGTATCCCTTAGTATAACACTTCTAAGAATACTTACAT
GAGGGGCACAAGTGGTACTAAGGTCATGCTTGCCAATTATGCATCTTCCTATGATCAGAG
AGAAATAATGGATAACAGGAAAATGAATGCTCTCAATTCTAGCTTGTGTTACACCTCTAG
TTTTCCCACGAGTAATGCTCAAAAGGAAATGAATGCAATATGATTTATGTGGTTTAAGAT
AAATCCCCCAGTCGGGAATTTTTCAAGCAATGCAAAAATACGTAATGCTCATGCGGAGAG
ATTTGTTGCAGAAGTTGAAAACAACATCATGAGAAGAGCGATGAGCTACTGATGTCAGCT
GTGCTTCCC