morexGenes - Barley RNA-seq Database

Contig contig_138749
Source Contig contig_138749
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_138749 (6971 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_138749

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7174	3	1428 bp	AK356073	Available	Available	None
CDS Structure of MLOC_7174

Contig Sequence (6971 bp)

>contig_138749 6971 assembly3_WGSMorex_rbca.fasta
CGACATATTGTTAAGGCGAGTGATACGCGCCGAGCCGGTCACGCGTGAGCCCTCTGATTT
GGATTCGTGCAGCCGTCGAATCAGTGGCGGAGCTAACGACAAAAAATTGGGCGGGCTAGT
AATACTCCGTCCGTTTCTAAATATAAGTCTTTCTATAGATTCCACTAACAGACTGCATAC
GGATATATATAGACATATTTTAAAATATAGATTCACTCATTTTTGCTCCATATGTGAAAT
CTCGGAGGGAGTACTTTACAAGCATAGATATACTTTTTTTTGCTTCTTCAAGCACAAATA
TTGAGGTCGTCACTCGTTGCTGTTGGTCGCACCTCCTGTTGTAGCAATTATATTTGCCGG
TTGTAGCAAAATAGAACGGTTGCAACATAATTGTCGCCACCTAGTCACGGTTCACATTAT
CAACGTGAATGGTTGTAGCAATTCTCGTTGCTGGTTGTAGCAAAATTCCATGAAGGTTGA
AGAAAAATCATTATTGTCGTTGTTGCGGGTCACATCATGAACGTGAATAGTTGTAGCAAT
TATTTTGCTAATTGTAACAAAAGCCGACAAAGGTTGAAGCAAAATCGTCGTTGTTGTCAT
CATGAGTCGTATGTCGCAACAACATGAATGGTAGTAGCAATTCCCATCACATGGTGTAGC
AAAGACCGATGACGGTGGAAGAAAAAATTGTCATTGTCGCTACCGACATGAATAATTGCA
ACAATTTTCATCGTCGATCGTAACAAAGGGTGAAAACAATTTACATTTATTTAATAAGGC
GAGCGAGCAAGCAAGCAAGCGAGGAATGACCGGCCGAGCGAGTACTGGGGGTCGGTGCAC
CGGCCCAATAGTTGGGTCGGTCGCGTACCAGATGAAGCGAGACGCTAAATAAGCCGCCGA
TCTTCCTCATCCTTCAGCTGCTACCGCGTGCATGGTCGTGCTGCTCCTCACGTGAGCACC
TGCCTAGAAAAAATGAGAAGTCATTCAGCATCATGTGAATCGCCCGAAGGCATCCCCTAC
CGGCCACCTTAGAGTAGTCGCTGGCCGCAGCCGTGGCGACGTCTCATATGAATTCATCTA
GACCGTTGCAGCTTATGTGGAAACGGGAGCCCTCATAAAGCGTTTTCATCATCGATCACT
GGTTGAACCTTTTTAAATCTATGGTTGAAGCATTTGTCACAACGTTTTTAGCTTCTTTCA
TTACATAGTTCCTACTTGAAGCTTTTTTAATTTCCGGTTGAAGCTTTTTGAATCTGTGGT
TGAAGCTTTTTTTGAACGGTTGCAACTTTTCCTGTTACATTGTGCCTGCTTGAAGCTTTT
TTAATCTCCGGTTAAAGCTTTTTAGTGCCCGGTTGTATCTTCCTCGGGTGCCGGTTGCAA
CTTCGTAGTTGCACATAACTAGTTGTAGCACCCTCACTGATAATTGGTTTGTCGCACCTG
GTCGAGAACTGGTTGTAGCAACGAGGTGAACTGGTAGTAGCTTCTACGAACCGTGGTTGT
AGAAATCACTCGCAGCGCCAACGTCCACCCAACCGACGCGAGGGTTGTAGCTACCGCGGT
GCCGACCTTAAGCTCCAGCAAAACCTGTCGCGGTCGTCAAAGCCTGCAAAATCCCCGGCC
TAGTTGAAGCTTTTTGGAATGTCAGTTGAAGCTTTTTGCGACGCCGGTTGTAGCTTTTTG
CCGTGACAGTGGTTGGTCCCAGCATTTGTCGTCATTGGTTGAAGCTTTTTACGGGGACGG
TTGTAGCTTCCTCGAATGTCAGTTGCAACATTCAAGGTGTCGCCTTGGTGCCCGCTGCTC
CGATGAGATACTCCCCGTAGGAAATGCGCGACGGTGTCACCCATGGTAGCTCGAAGTCTC
CCCGATCGTCGTCCGCCCCGAGCTCACAGGACATGTTCACCCTGGCCTCTGAGTTCGTAG
GCCATGGCTCCTAAGCATCTCGTAGTCACCCCCCGTCACCATCAGCCCCGAGTTCGTAAG
CCATGACCGCCTTGACCTGTGAGCTCGCATGCCATGGCCCCTATTGTAGCAGTGCCGAAA
GAAATCTTGAGGGCTCGGGGTGACAAAGCATGGGAGCAACGCGCCATGGAGGAGGTGCAA
TGTGAGCCTGGGGGAGGAGTGCCTGAAGCTTCTGGGGCTATGGCGCAGGAGGCGAGGCGG
GGTGCTACAGAGGGGATAAGGTTGAGAGGAGGAAAACGATGTGTGGCTGAGGAGATAACG
TGTGTGGTCAATTGGATCTTATTTAATCCAACGATCGGGGTAAGACCGGCCCAATAAATC
GGCCGGCGTGTCGTACACAAGCATTATCCTATTGTTAACTGGGAACGATGTAAATTTGTT
GACACGGAGAAAGGATTTCACTGAAAAGAGTTTCCCGTTCAAGGACTTGGGCTAGGCATT
AAACGTAGTCTTGGGCATAAAATTAAATCTATAAAGATAAAGATACCCAATAGATCTAAC
CCAAAATATATATTGACAAGATACAAAAGTAGTTTATTATGAAAAATGCTAAGAAGAGGT
TCTTGCCGACATCACATGGAAATAATGTTAGCAAGATTCCATGTCCTAGGACACTGATGA
CAAGTGTTTGGGTTAATCATGTACTCCAACCTCACGGAGTAGGAAAGGGATGAGGACGAG
ATCCCCCAATCCCGGCCCGCCACTCCACCATGAACCGTCACGCCTAGACTTGTCACGTAT
GCATGTGCCCCATGCATGCATATCATTCATCATCCAAGTTGGGGGCTCAAAATCATCCGA
GTTGCTGAAAAGCGGCCAATTTTTCTTATTTATGTTTTGCCTATGTACCTAAATCAGGCG
CCTGCCCTATACACGGCGGGGTTTCGGTATAAACCGAAAATTCAGATTGTACCATTCGGT
TTTCGAATTTACTAACCGAAAAAGTCAACCCAAAAGAGGTAACCAAATCTTCGGCGACTC
GCCTGCCTACACACACTCGCATACGGGCTGATTTCCACAGCCCACGGAAGTGGCGTCCGT
AATCTCTTTGCTGATTGTACACGGGGTGGATTGTCAAGCTTTGTTTAGGTAGTACTGTAC
AACATCCAGGCCTAGTTTGCGTACAGTTTTCTTAAAACAAAACAAAATACTTAACGTACA
CAAGTGGCTGGCTGCATGTGTACGGCAAAATGAGAAGCGCTCTTCGTCCAGTTTTCGGTT
TCACTTTCGGTCCGGTGTTCGGTTTTTATGCCCACCCCTACCTATAGGTGCTCCTATATA
GCTTTGTTAATTTGTATTCACATATTCCAGGCGCGTCGAATTTTCCGACTCCAACGACGA
CGAGAATGAGGTTGAAGAAGGCCTAATCAGCCATGCATGTGTACCACCAACTTTGTTATT
TTTTGCAACCAATGCAAGAGAATGCTGTTTTGGCAAAGAGGTGTAGATACATGAGAATCT
ATTATAAAGAAGACATCAAAAAAATACACTTTAAAATGTTAAAAAATTCCCAAACACTAA
TTTCACGTGTACATTCGAACATTCTATGTTTGCTCACAAAATTTAGCATAGATAAAATTG
GACATAATGAAACAACATCAGTAGTAAGGTTGAGAAGACGATTTGTTTTGTGTTGGCCGT
AGAGACCAAAAACAGAGCATGTCCCGGCACCCGATCATCACAACTTTAATACCAGTAGCA
GTAATGACTGTGATTCAGTTCCAACAACAATAAAGCCTTTTGTCCCAAACAAGTTGACCG
AGAATCAGTTTCGACATACTCGCAAAAAAATAAAGAGGATCAGTTCCAAGATTCATACCC
CAAGGATTCAGATGGAGAACTGAAACTGATTATTCCAACTTATTAGCAGCTAGTTAACAT
CTGACCAAATAAGCTCAGGCAGGGCACATGAAAAGACAAACAGCGAATCTGCACACGATG
TAGTTCAGATACATGGTGACACAATTCTGAATTCAAGCCCATATATAGGAGCAGTTATTT
AGTTTGCTACTGTATACATTATACAGATGGCCAATAAATGTGATCACCATGGTTTCACAA
AGTAGAAATATATAAACCTGAGCTGCGACAAAGAACGTCCAATGTGATAAACTGGTAAGA
CAGTAGCTACATGCCCACCTAACAGGCAACAGTAGAGCCGAATAAAAGGACAGTTTTGGA
TTTCCTCTAAGGCAGCCTACTATTGAAATAACAGTAGAACCTAAATACATGCTCAACTAT
TGAAATCAAACAATCCATAAAAATCCCTTAAACTGAGCAATGCAAGGGGAACATACAGGA
CTTTTGCATAGCGCTTGGATTGTTCAGATCTACAAGTCCAAAAGAGGTGCTCACTGCCCC
CAAAGTAATCCATTAGTCGAAATGCAAATACCTTACATGGGAAAAGAACCATCCTAGCAA
TGCGCTGAACCAAAATGTCATACATACTTGATAAGAACACTGGTGAGAGCTGAATCATAA
ATATTGGCAATAATAAATACTTGGTAGGAGGACTGCTCCAGCTCGTAAATTCAGTGCTGC
CATCTAAACCAACAACGATAAATTATGAAAGAGCAGTATCGGGTTTTCGTCTCAGACGAC
AGCCTACATACTGAGTTATGAAATCAAACAATCCACTCAAGCCCTTAAATGAGCAGTGCA
AAGGCTTCGTATAAAGGTACCCACTGTGTCTGTAGCGCTTGGATTGTTCAGACCTACAAG
TTCAGAAGGTGGCCACTGCCCCCAAAGTTACGCAGAGCACAATATATGAAGCACCAAGAG
ATGGATTACGATAAATAAGTGGTACAGATTGCATCTATTAACTAATGTTTTAATGCCACC
TACAGGCGATGGTAGACCTCCCTGTAGTTTCAAATGCAAATACCTTAATTTGCAGTTTTG
CACCCAGTGCAACTTGGTCCTTGCCAGCCTGCCGTGGAAGTCTTCTTCATAGCGTGTCCC
TGCTAAAGCATTGCCAAGGAATTGTTGAAATAGCACCTAAACAAAGCAATATTGCCCAGA
TCGGCAGATCCACAGGATGAACACGTCAAAAACAAGATCTATTTCGTGTACAGACGAAAG
CAGGGCACACAACAGGTCCCGGCCATACCAGTAAAGAGACTGAGAACCAGTTCTGACCTA
TATAAATTTCCCAAAGGATTCAAGCAGAGAACTGAAACTGGTTATTCCCACTTGGCAGTA
TCTAATTAGCCACAGCAAAATATACTTAGCCAGGGTTACGAAAACAACAGATGATGCAAT
GATTCCTGCTCAGCACAGAATTCACATATAGAACATAATTCTGAATTCAAGCACATATAT
GCCTGCAGCAGACTATGTTCATATAGCCAGACAGCAACAAAGAACAAGGAAGAGTTGCAT
CACCCGATGTGATAAAATGGCAACTCAGATTTACATGCCCACCTATGGCTATGGGCGCAT
CCAATTAGTCACAATGCAAATACCTTATCATGTGAAAAAAGAACTATCCATGCACTGAGC
CACTGAACCAAAATGTCATATATGTGAGAAAAATAATTGGTTGGAAGAAAGGCAAGAGTT
GAATCATAAATATCTGCAATCTCCTTTGCAAAATACCGGGTAAAAGGACTGCTCACGTTC
ATAACTTAATACTAATGAAATATGAAAGAACAGGATTGAGTTTTCCTCTCACTAGGCCTA
CAAGCTGAATTATGAAATCAAACAATCGATTGATTCAATCCTTTAAATGAGCAGTACAAA
GGCAACATACAGGACTTCTCTATAGTGCTTGGATCGTTCAAATCTACGGGTTCAAAAGGT
GCCACAGTGCTCCAAAGTTACACAGAGAAACAATATCTAAAGCACCAAGAGATGAATTGT
GAAAATAAAGAAGTGGTACAAACTGCATCTAGTAACTGAAGTTTAAAGCCCACCTACAGG
CGAGGCGACAGCAGAGCTCCCAGTAGTTCGAAATGCAAATACCTTATATGAGAAAAGATC
TATCTTGTGTCCTGAACCGAAGGAACTGCTAGAGTCAGGCGGCCACAAGCACATGAAGTA
ACACGGATGTCTAATACATTTCAAGTGAAAGAAGAAAACAATAACTTATCACCCGCTTAC
AGGCGACAACATACTGTCCCAAGCGGAAAGTGAGTTACGCTTTCATCTCGGCGAGCGCGA
GCTGGAAGGCATCCGCCTCGACCTTCTCCCACTCCTCCTTGGCATCACCCTTGGCAGCCT
TCTTCATCGCCATGCCGAGCTCCTTGGCATGCTTCACCTTCCTGCTCTTGACCAGCCCTT
GGATCAGACCCTTGACAGCCTGGAACGGCGGCGCCCACTTGTTGGCCAGGCACTCCTTGC
ACACCTCCAGCGCAGGGACGAACGCGTTGTTTTCGACCAGCGCCTCGATCAGCATGATGT
AGGTCTCGAAGTTGGGCGACACGCCTTTGCCATTGGGCCTGGGCACCTCCGGCATCCTCT
TGAACAGCGCCACGGCAGCGCCCACCTCCCCCTCCTTGCAGAGCCCGCCGATGACGGTGT
TGAAGCACTCCCGGTTAGGCGGGACGCCGTTGGCGCCCATGGCCTCCAGCAGTTCCTCTG
CCTCGAAGCTCCTGCCCTTGGCGCACAGGCCGGACATCCGGAGCTTGTAGGTTGTGACGT
TGGGCTTGAGCCGCCTCTTGCCGCCGGTGACCTCCTTGAGCAGCAGGTCGAACGCGGCGT
AGTCTCCCGTCTTGAGGTACCCCTTGAGCATCTCGTTGCAGGAGACTATGTCCGGCTGCA
GCCCGGCCTTGTCGGGCATTCCATCGAACACCTGGCGAGCGCCGGCGACGTCCCCCGTGG
CAACCATGCACTTGAGGAGCACGTTGTGGGATACGACTCCCGGCGCGATGGAGAGCTCCG
CTGAGAGGTCGCGGAAGGCCTGGATGGCGCGGGCGGGCTGGCCGGCGTCGTGGTAGGCGG
CGAGGAGCGCGGAGAGGGCGCGGTCGGAGGGGGGCACGACGAGGCGGAAGGTGGAGAGGG
AGTGGGTGGGC