morexGenes - Barley RNA-seq Database

Contig contig_138647
Source Contig contig_138647
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_138647 (6618 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_138647

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7101	1	736 bp	None	Available	Available	None
MLOC_7100	6	2400 bp	MLOC_7100.3	Available	Available	LOC_Os08g41390.1, FRAME:+3, EVALUE:0.0, 13108.m04442 protein peptidyl-prolyl isomerase, putative, expressed
CDS Structure of MLOC_7101

CDS Structure of MLOC_7100

Contig Sequence (6618 bp)

>contig_138647 6618 assembly3_WGSMorex_rbca.fasta
GTCGGTCTCGGGCTGTCACAATATGAATCATGAGGAACATAATGATCCCACTCAAGTAAC
ACAAAGATCGAATTTACTCCAAGTAATGTATTACAAATGGATGGGGATGAGATAGTGGTG
ATGATGGCGACGGTGACGATGATGACGACGAGGTGTTCTTGATGCAAAGTAGCGGTTAAG
AAGCCCTCGATAGGTCCTTCTCTTGAAGGCTAGGGTTCTCCTGTGTGGATGTGTTTTCGT
CCTCCTCCGTGACTCTCATCTTCGATTTGATCTCACGGGGGTGAAAAATAGTGGACGAGG
CAGCGGCCATGCCGCATCATACGACCACACATATGAGTCGGAGCGCTCGTATGGCTGGCC
ATCTTTTTCGATGGTGCTCCTCCTTTGGCCCCTTTGCCTTATTCTTTGAGGGTAATGGTT
TATCACATTAAATAACGCTATTTCACCACGATTGTATGGGATTCCTTCCATATAACATTA
TTTGCTCCAAACTGTGTTACATACGGAGTACACACAAAAAGTAGTGCAGGAACGCAGTAA
AATTCCACACGGCCTACCGTGTAGGCACAATATAACCATCAAAATCATCACATAATTTGG
ACTCATCACAACTCTGTCGAAGCGAAGTCGAGGGATGGCAGGCGACCGTGGAGCGTGAGG
CCAACGATACTAGAGTTGGCGAAAAGAGGAGACCGTGGTTTCTCATGCACCGACGGCAGC
AAGAAGAGGCCACCAACACGGGTAAGAGCTACTTCCAATGCTACAACGAGATGGTGGGAG
TGTGTGGATGTAGGAGGTGGCCTGGACGACATCCAAAATGCCGAAAAGTGGGCTGCGAGG
ATAAGGAGGCAAGTGTGGAGGGTGTCGCGCGTGGATGTGAAGGGGAGGGGGAGAATGGCC
TACGTTCCACCGACGAGCGGGCGAGGGGGAGGACGGTGAGAGCGCCCACACACGTCTACT
TCATATCCGCGCTGACGCAAACCATGTCCAAATTTGGGTCTTAAATGAGTCGTGGACGGA
TGAAAAACGGACGCATGTCCGTTTGCATCGCCGCGTTGCGCTGCGATTAGTGTACGTTTC
GACCAAACGGATGCGAGCAGATCAAATGGAGTCGTGGAGTTGCCCTAAAATGTCTTTTGA
TTCAACTTTCTCCAAAATTAACAAAAAATCAGAGGTTCTGAAAGACAAACTTCAAACGCA
TGGCCGGTGCGTGGGGATTTGAACTCGATGAAATGTGACACGTGATCACACAGGGAAGAT
TACGAATTTACGATGGTACCCACCAAATCTGGAAGCATCCGCTGCCGTTCACTTTCCATT
TCCAATTTCCCCAGGAACACTCTAGAAGCCCAGTTTGGCTCTCTCCCTCTTTAAACCCCC
ACCCTCATCATACCCCCTCGTGCTCTCTCTCTCTCTCTCTCTCGCTCCCGAACCTTCCGA
AGTCCAAACCCTAGCGAGCTCCGTTCGGCCTCCCTCCCAAACCCCAGATCTCACCATCCC
ACGCCATGGACGACGACTTCGACATCCCCGCGGGCGACGACATGATGATGGGAGACGGGA
CGGGTGACTTCGGCGGCGCCGATGGGCCGGGGATGAAGGTGGGCGAGGAGAAGGAGATCG
GGAAGCAGGGGCTCAAGAAGAAGCTGCTCAAGGAGGGCGAAGGGTGGGACACCCCCGAGG
TCGGCGACGAGGTCGAAGGTATCCGCGCTACTACTGCTGCAGTTTTCCTCCCAAATCTCA
GATGACATGCCACAGTTTGATCCAGTCCTTGCCCCGCTTTAGGATTCAGAGTGTTGTGAG
GTGCGGAGCTACTGGTCAAATTAGGAGAAATTTGTAGACAACTTGTTTAACGCTGTAGTC
TGTGAATTTGGAATCGTTGCTCTGCGATGCTGTGATGCGTGAAAGGCCTCTGGAATCAGT
GAGGTGTTTTTTTGGTGGGATGCTTAGTTCCGTGGTGAAACTAGGAATAAATTGCAGACG
GCTTCGCTCATGCTGTCATCTGTGGAGCCTGAATCGTTTCTGTGACATTGTCCGAAGTTC
CAACCATTTATGTGACATTATGCTAGTCTGGTCCTTGAGGTGGTCAAGCATCGTTCATTG
TTGCTAGTTCTACCGCATGGTTACGACCTGCTGTGGAAAGCGTATATGTGACTACCTTCT
TGTTGGCGGATGGCGCCTGATAATGAGATAATGAGTTTTTTTAATGAAAGTTCCCATTAG
GGGAACTTATTGTTGTTGTTGTTACTGCTGTGTTACTTTTTGTTCCATGCCTGAACAGAT
TATGTATACTAGCAAATTGCCAGTGCGTTATGCCGGATCCAAAATAGACTGGTACATGTT
CACAAATTTGAAACAAAAAAACATTACTATTTTTGGTATATACTCCTATCACTTAAAATA
TGTTAGGTTTTACCAAAATCTATACATTGGATGCAGATTGGATGGTCCAAAAGAGCCAAT
GACAGAAACACCATCATCACCAAGTTTTGTATGAGTGTATATTCATATTTATGTATTTAT
AGAGGTGTATAAATCGCTTAATCCTGTTGGCTGAGGATTTGGATAAGTAAATTTTGGCTG
ATGTACCATTGCTTTGATATTTCAGTCCATTACACTGGCACCCTCCTTGATGGTAAAAAG
TTTGACTCCAGCCGTGATCGTGATGACACATTCAAGTTCAAGCTGGGACAAGGTTCATTT
CTTCCTCCCTTTATTTGTATTATACATAAGGGTCTTGTAAACGATTTGATTGTGAACAGT
GCGCTGCACATGTTTACCTGTGGCTGGTGCGGTACATAACAGAATTGTGGGGTTTCTTGT
AGTTGGTTAAACTGGGTAATTATTAAATGATCCTTTATTTAACAGGCAAGCTTGTTTTTG
GCCTTTAGTGTGCTTGTGTACATAACAGGATTATGGGGTTTCTTGTAGTTGGTTAAACCG
GGTAATTATTAAATGACCCTTCATTTGACAGGCAACTTTGTTTTGGGCCTTTAGTGTGCT
TGTGTGCTAAACAGCTTCCCGTGAGCATTTGAGCTTTGGTAATATGTGCACATGCCATCA
CCATTCATGAACAGATAGTGGACTGTAGTTGCTTGACAAAAGTTGCTGATGACTGACTAA
ATGCTAGTTCAGCAAATTTCGGTGACAATCAGGAGTAATCTTGTTCTGTCTTTAGTTTAG
TCATGCTCATCATTTATTATAACAAGTTAATTGCTGCAAGTTTGTTTGTATATGCTCCAT
GATGTTGGGATTGCATGTTCGTTACTCAGTTGCTACTTTGTTGCCAACTTATGTCCAGGT
CAAGTAATAAAGGGATGGGATGAAGGCATCAAGACCATGAAGAAAGGGGAAAATGCCCTT
TTCACCATTCCTCCTGAATTGGCTTATGGTGAATCTGGTTCACCTCCAACTATTCCGGCC
AATGCCACGCTGCAGTTCGATGTTGAGCTGCTTTCTTGGACCAGTGTCAGGGACATTTGC
AAAGATGGTGGCATATTCAAGAAGATATTGAAGGAGGGAGATAAATGGGAGACCCCAAAG
GATCCTGATGAAGTCTTTGGTAATCTTTGCTAATTGAAACACCTTCCTATCGCATGTATT
CCCCTTCTTATTTGTGTAACTGACCTTTCTTGTGTTGTAGTCAAATATGAGGCCCGGCTC
GAGGATGGTACTGTTGTGTCCAAGTCTGAGGGGGTTGAATTTACTGTTAAAGATGGTGAT
GCTCTCTCTCTCTCCCGCTCTTCTCTACACATCTGCATCCTGCTGAGAGTGTTGGTGCTC
AATCCTCTGCTTGCTAACAAATTGGAATTTGGTTACAGGACACCTCTGCCCTGCATTGGC
GAAAGCTGTTAAAACCATGAAAAAAGGAGAGAAGGTGCTCCTCGCGGTCAAGCCACAGTG
TAAGCTTATTTGACGCTACCTTCCTTTGCATTTTTTCCCTTTTCCCTGGCAGTTTTTTGA
ACTTTTGAAATGGCAGATGGATTTGGTGAGATGGGTAGACCAGCAGCTGGCGAGGGAGGT
GCTGTGCCACCAAATGCTAGTCTTATTATTGACCTTGAGCTGGTTTCATGGAAGACTGTC
ACAGAAATAGGGGATGATAAGAAGATCCTCAAAAAAGTTCTCAAGGAGGGCGAAGGATAT
GAACGTCCCAATGAGGGTGCAGTTGTTACAGGTATATAAGCTTAACCATGACGGTTATTG
TTTTAGCTTACATGTGGCACTGCTATTTGAGTATCAATGAACTAATTATTCTGTAATAAG
TCATAACTGAATTGTATTTTGTCATTGTCAGTCAAAATAACTGGAAAACTTCAAGATGGC
ACAGTCTTCTTAAAGAAGGGGCATGATGAACAAGAGCCATTTGAATTTAAGACTGATGAA
GGTACCTTTTCTCTTTGCTTTTGTTTGTGCGGTTTTGGTCACATTAAGTAATCCATTGAA
CTCCACTGGTATACTGTGCCGTTTGAATAATATGTTTGTTCCTTTTGGTTTATACTCTAT
TTCCAGATGCGGTTATTGAGGGTCTTGATCGTGCTGTGCTAAACATGAAGAAGGGCGAGG
TTGCTCTTGTCACTATTCCCCCTGAATATGCTTATGGCTCGACGGAGTCAAAGCAGGATG
CTATAGTTCCACCTAACAGTACTGTGATTTACGAAGTGGAGCTTGTATCATTTGTAAAGG
TGTGCTTCTCTTTGAAATATTCCTGTGCATTCTTCTGATTGAACATTCTGCGTACAGTCA
TAATTATGAGCATCTTCTTGATACATAGGATAAGGAGTCTTGGGACATGGACAACTCAGA
GAAGATTGAGGCCGCTGGGACCAAGAAAGAAGAGGGGAATGCCTTGTTCAAATTGGGCAA
ATATGCCAGAGCTTCCAAGCGGTATGAGAAGGTCTGAGGTCTTCCTTCTTTTGTACATCT
GTAAACATATCATTTGTGTTCTCACTTATCTTTGCTCGACTTCTCTATGGTGCCTGATTT
ACCATCTGATATCCATTTACTCCCAGGCTGCAAAGATCATTGAGTATGACACTTCGTTCA
GTGAGGATGAGAAAAAGCAATCCAAGCAACTGAAGATCACCTGCAACTTAAACAATGCTG
CCTGCAAGCTGAAGCTGAAAGACTATAAGCAAGCCGAAAAGCTTTGCACCAAGGTAAATT
TTACCACTGATCCTGCAATAGTGTATTTTGTATTCGTAACAAACCAACCAAGGTAACATA
TCTTGCGTTTCTTGACAGGTTCTGGAACTGGACAGCCGAAATGTCAAGGCTTTGTACAGA
AGGTCTCAAGCCTACACTCAGCTTGCGGACCTAGAGTTAGCAGAGGTTGACATTAAGAAG
GCACTGGAAATCGATCCTGAAAACAGGCAAGTTCCATGGAAGGGTCTATTATCTAAACCT
TTAGCAGATACTGAGAAGGTTACACCGTGTCTGATTTGATTTTTGACGACGTCGCTGCTA
CTGACAGGGATGTGAAGTTGACATACAAGACCCTGAAGGAAAAGATCAAAGAAATCAACA
AGAAGGACGCCAAATTCTACAGCAATATGTTTTCTAAGATGACCAGGCCTTCAGCAGAAG
AAAGCGTAAGCACATCTGCATCTCTCACTGTTTGATTTGAGTCCACTCAGCAGATCTAAT
TGCTTTCCCCAATAGCAGAAAGCTTGAACTGGAGCAATACCCAAAGCAAGGATCGGAGTC
CCGGAGTGTGCTGAAGGAAGGGCCAGCTTGTCTGCTTAGCTCTGGTTGGTTAGAAGACCC
ATATGCTTGGGAGTTGCTAAAAACTAGAGAAATTTCAGTTGAGGGTGCCAGGCGATAATT
TTTCTTGTTTAAAAGTTCATGTTTAGACCTTGCATATTATAGTTTGTGCGTTCCGGGCAA
TAGGTGGTCCTGCCTTGAGGATCTGTGTTGTGTGCTTTCCTAACGCGCCCTTGTGCAAGG
TATCGTTGCCCATTCGTAGTCGTTGAAACGTCTGACTTCAGAGTCCTGTTGAAGGCAGCG
TATGTGGAATCCTATATTTTTTTTTTGAAACGAGGCAAAATAGTTGCCCCCTTAATTAGA
GGAAAACTAAGTGAAAACCGAGATTACAAATCCCACATGGGGCATGCGGACGACCTGGTA
ATTAGAGGATAACCGAGCGAAAACCTTACATGGAGGCATGCGGACGACCTGGCTACAAAC
GAGCTTTACAACATTGCTGAGCATTGAGGACAAGACAACTTCGATTTTGACAATGAGCTT
TACAAAGAAAGTTGCAAGCCTCGCACTGACCTAGTCAAGCGCAACATCAAAAGAGCATAA
CCCGCTAAAAACCTTCCTCATGGAGTCATTGTTGCTGCAGTCCTGCATCGAGCACCTGCC
GACCGGGATGACGTGCACGTCCAGTCCCTGAGAAGCGCGAAGGAGACCATGAACTTGAAG
GCGCCGTTGCCGCCGACTCACACAGAGTCTTGAGCTTTTGCCCTAAGGACATGACTCGGG
ATGGAGGAGGGGGAGAGTCTTGAGCTTTCGCCCGAAGGACATGACTCAGGATGTAGAAGG
GGGGGGGGGGGGGCACACGCGGACACACCAGGGGGAGACGGGCGCGCGGGAGCCGCGGAC
GCACGGCACACACCACAC