morexGenes - Barley RNA-seq Database

Contig contig_138567

Source Contig contig_138567

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_138567 (5534 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_138567

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_7056	1	568 bp	AK376574	Available	Available	None
MLOC_7057	2	3172 bp	MLOC_7057.2	Available	Available	LOC_Os06g15370.1, FRAME:-3, EVALUE:0.0, 13106.m01700 protein peptide transporter PTR2, putative, expressed

CDS Structure of MLOC_7056

CDS Structure of MLOC_7057

Contig Sequence (5534 bp)

>contig_138567 5534 assembly3_WGSMorex_rbca.fasta
GTGCCGACCGGGATCACCACCCCCCTGGGGGCCATTCCCACCCCGCTTTTTCCCCTCTCC
CCCTAAAAACCTCCGTAAACCATACATTACACGAATTTAACCCCCCCCCCCCCCCCCGAC
CATGTCCACCTCCGCCGCCTCGTCGCCTTCCCCCGACCAACCTCCCGCGAACAAGGCGGT
CCGCGTGGTGGTCAAGGGCCGGGTCCAGGGCGTGGGCTTCCGCGACTGGACGGCCGAGAC
GGCGGAGTCCCTCGGCCTCGCCGGCTGGGTCCGCAATAACCGCCGCGACGGCACCGTGGA
GGCCCTCCTCTCTGGAGACCCTGCCAAGGTCGACGAGATGGTCACCCGCCGCCTCCCCAT
CGGCCCTCCTGCTGCCGCCGTCACGGCCGTCGTCACTTCCCCAGCCGACCACATCCACCC
CTCCCTCGGCTTCGAAATCAAGCTCACCGTCTGATCGGGTTACGCCGACGTTCGACCGAC
CACAACCAGCAGGTTCTGCTCGACTTGTGCTCAACTGCCGGTGGTTAGTACCACCAAACT
AATTCCATTTCTGACCTCCGGCATCTGCACTACTGCATTTCTTAGGCAAACCAGTTAGAA
GAGAACTGTTGCGGTCAATGCGCACAACAATTGCTCTATTCGATCAGTCCACATGTTGGC
TATTACTGTAGGATCAAAGGTCATGGCCTAGACTGTATTGCTATGTATTGTATCTCGGTA
TAGCTCTTGAATAATATAGCACTGCTGAGTTGTGATTTAAGAACTATGGTATCAAGATCA
GATTGTTTCGGTCATTGACAAATTTGCCACATAAATTTGCCATCAAACACTTCCAAATAA
CCGCGATCAACTACGAACATAACAAGCAGAGTTACACATTCGTAGAAACCTGGTATTAGC
TCAACTTGCCAGTGAGCTAGATACATTTCTCTGTTCCTGATCTCCATACAAACCCTGAAT
GGCATATACACATTCACATCCATCTTCACAACCTTCTTCTAGCTAGCTAGGCCAGTACCT
GCATACACTGATACATCACACTACATTGCATAGTGTTACTCGCTCAAACCTTCTGTTGCA
GCTGCACCATGGACTTGTCCTCCCCATCCTCTTCCTTGTAGAGCTGTACGGGCTTGTACG
TGTACTGCCTAGCACATATAAGGTAGTACACCAGGTTCATGACCTGCAGCAGCGTCACGA
CCCAGTAGAAGTAGTCCAGCTTGCCGCGGTTGATGTTGTCCGGGAGCCAGTTGGATCCGT
CGGAACCGGCGCTCCACCGGTGCACGATGGTGATGAGCAGCGTGCTCACGTAGCTGCCCA
GGGAGATGGACAGCCAGAAGAGCGCCGTCGCCGTGCTCCGCATGCTCTCGGGCGCCTGGT
CGTACATGAACTCCAGGTGCCCCACAGAGTTGAATGCCTCGGCCACCCCGTGCAGTGCGT
ACTGCGGCACCAGCCAGTACACGGACAGAGGGGCCGTCCCAGCGTCAGTGGTGCCCCCGG
CCGCCGCGGCCTCCCTACGGTGGCGCTCGACGAAGCCCGCGACGAGGGAGGCCGCCACGG
AGATGGTGAACCCGACGCCCATGCGGTGGAGGAAGGAGATGCCACGGTCCAGCCCCGTGC
GGCGGCGGGCCAGCGGGACGAGCGCGCGGTCGTAGACGAAGAGGGTGGCGAGCATGGCGA
GCATGGTGAAGACGGTCATGGAGCCTGCGGGGATCTCGAAGGACGAGTGCGGAGCGATGC
GGCGGTCCATGGTACTCGCCTGCTGCAGGGAGAAGGTGTGCTGCTGCGATGACGCCGTGA
TCACCAGGATGCCCGCCGCCCAGATCGGGCCCATGCGGACCACTGACTTGAGCTCCTCCA
CGCGGTGTACTGTGCTCAGCCGCCACAGGTTGGGGACTTGGGACGGTGGTTGCTTGCCGG
AGGATGCATCCGCCGTGAGTAGGTCACCATCGCTGACGATGGCAGCACGGTCAAAGAAGC
TGCAAGGCAGAGTGAAGAAACAGACCGATTAGGTCACCATAAGGCTTTTTCTCTGCGTGC
CTGGCGCATTTTCCGGGGACACCAAAGCTCGGATCACAGCGTCAGTTCCGTTTCTGAACA
GATATGTTGGTTTTATTTATTTATTTTGTGATGCTGGATATTCTGCTCCTACTAATGGTC
TGAAAGGAAAAGCAAAGATTTGCGGCTTTGGGCCTTGCTATTTCGTTGCCGACTGCCGTA
AATAATGTAGGCTGGTGGAAGGAGCAGATATCAGTACCTGTATCTGCGGCCTTTTGTCCC
GGCAACTAGAGACTGGTTGTCTACATCGTTTCTTATCTTAATCTACCTTGGACAGGTCGT
GGCGAGGGACTTGAAGATTGAAGCACTCTGGCATTGTTCAGTGTTTACCGGAGGTAAAGT
TCGCTAATAAGACCAGTCGGGAGTACGCGATAGCACAACTTCATGTGGAAGTCCGTAAAA
AGGAGAAGCGTGTTGATAGGAAACAAATTGCTGTGGTTCATCACTTCACCTATAAAGTGT
GGCTGTTTTCAGAATAAGGAAACAACGATGACAGAGATCAAGTAATGTTTGGTAAGGCAA
CTCTCTTGAGTGGTGCTCGAATCGAGCTCAAAGCAGGGTGGATTTTTGGTACGTACAAGC
GTGGGAAACATGATTCGAACATGACTTATTTTGAGCCAGAACTAGAACAGAGCTAAAACC
GAAAATGTGCCGCTGAAATCCAGCGGCGGCTGTCGTCTCAGCTCACCACATCACTGGCTA
GAGCACTCCTACACGGGAGGATTTTGGCCTCATTTGCCGACATCGACTTCTAATCTATTA
CTGTACTACGTCCTCTTGTCATAAACGTTGTTGGCCCATCTAAATTGCATATTTTTTTGG
CAACATAGATGGTACGCTAGTACTCTTCGCTGTATCTTATCGTCGTTGCCGACTTGCAAC
ATTCACGGCCTCACGGTGATTGCACGTTCTGACTTGTGGCACGATGCGGATTTTGATCAT
TTTTGTAAGGATGGCAAAACTTCAGAAATAAAGTTGCTACTTTTTGTGAGGAACTCTGGG
ATCCAATCCAAAGCACTCCCGGAAAAGAAAAGGGAGGAGGTGATGGATAGAATAGAAGGC
GCGGCACGCCACGCACGTGCACGTACGTACCTGAGCTGGGTGGTGTGCACGAGCTTGCCA
TACATGGAGATGGGCGCGTCCATGTCGTCGTTCTCGTACAGCCTCCCGGGGTCGTCCACC
CTGGGGACGCGGCGCTTCCGGACGGCCGCGGCGACCACCTGCGCGAGCCGCGTGAACGGG
CTGCCGGCCGGGTCGAGCCGGCGGTACATCGGGTACCCGCCGACGAAGGCGACGACGGAG
ACGCCCATGCAGAAGGCCGGCACGCCGAGGCCCCATCCCCACCCCACGTTGTCCTGCACG
TACACCACCGCCGTCACGGCCACCAGCTGCGACGCGCCGTTGCAGAAGTAGTACCAGTTG
AAGAAGCCCCACGTCCGCGCGCGCTCCGCCGTCTGCGACTCGTCGAACTGGTCGGCGCCG
AACGCCACGATGCACGGCCGGTACCCGCCGGCGCCCACCGCGTTCAGGAGCAGCGACACG
TAGAGCACGGCGAGCTGCCATGGCAGCGCCTGCTCGCACGCGCCCCCCGCCGCCTCCGCG
GCCTTGCACGGCGCCGGCCGGAACTGCGGCAGCGCGGCCGACACCGTCAGGAGGGCCATC
CCCTGCGAGGTCATGCAAGAAGAAAGCACCAGCGTCAGTCACGCACGCTTCAGCTCTGCT
TCATATGGGTGTCGGCACGGCATGTACGTGGTGTGCGGCGTGTACGTACGAATTGGTAGA
CGACGGAGGCGCCGGCGATGGTCCAGAAGCGGCCGATGCAGGCGTCGGCGAGGTAGGCGC
CGATGAGCGGGGTCATGGCGGAGGTACCGCCGAAGTTGGTGAGCGTGGTGGCCGCCTTGG
CCAGCGGCATGTGCATCTGCTGGGTGAGGTAGGTCAGCATGTTCGTCGAGAAGCCCACCA
CGGCAAGCTTCTCCGCCACCTCGTTGGCTGCAGGGCACGAGCCCACCGTCGACACACAGT
TTAATCTTAGGACAAGCAAGGCAGTCAAATTGGAATCTGTTTGCAAGAATTTGCTCACCA
AAGATGAAGGGCATTGTTCTTAGGCCGCCCTTCCTCTTGCTCTTCTTCCCATCCATGGCC
GCCTCAACCGCCATTGTTTGCGCCTGTGGTGGTAGCGGCGCGGTGGTGCACTCGGTTGTA
CTACATGCAGCCACTCCTCGCTGCATCGTGAATTTGTGGTGGTATACGTAGCAGCAGCTT
GGCTTCACATATTTATAGCTAAGCTAGCTGCCAGTGCCAGTGCCATGCCACTACCCACTA
GACTGCACTACTGCAAGCTCTGAGGCTAATTTACACGAAATAGGAAAAACTGCGGGACAA
CAATCTGAGGTTAATTTGCAGTATTTATTTATATGTGGTTTTTTGGGCACTTGGAATAGA
CGGCTGTTTCTGCTACTGGCTAACTGCCATTGCAAGTCCCCTTTCTTCTGGATTCCTTTT
CACATTTCCGAACTAGGGGCTAAGGACTTCACATGTGTGATGCGTCTATATCACAACGAG
ATCTTGGCAAATAGCTAGGCAGTGGCAGGACCAGTCCTAACTGAGATAGACTGGAACAGG
AACGTTAAGAGCATGTCTAGCAGACTATAAAGCCGACCCTATAAAGCCGACCCGCAAAAG
TGGTTTACAGTTCGCGAAAAACGTTTTTTGTGAGATGACGCGAGCGCAGACAGAAGCAGA
CACCCTTCCTTCAAAAAAATGGACCCGTATAAAATAATATTCGTAGAAGATGCTATTATA
CGGGTCGTTAATGCGGGGTCTGTTCGAGCGCCACCACGTCAACCCGCAAACAGAAAACCT
CCGAGTAAAACATAGTTGAAATTTGACAGCGATTCTGGCAAATGAGTTCGAATTTAAACA
ATAAAACATAGTTCGTGCGCGAAATGAAAGCATAGTTTTAAAAACAAACGCAAAAGGACT
TCATGCATCCTGGTCGCTCTTCAGTCTGCACCATTGAGGTCATCGCCGCCCCCGAATCCA
TCGCCTGCATTTGTTCCTACTCCGACACTTGTCCCTACTCCGGCATCGAAATTATCGGTT
CCGATTCCAGACAAGAAACCATCGCCGCCATTGTAACACGGAAGCATCCTCCTCTTCAAG
ATTTCTTTCCTTGTCATATTATGTCATTCTTTGCTGATGTCGTCCATTTCATTATGGTTC
AAAGTCATGATCCTATTCTCTTCAGCAAGAAGATTGGCCATGGTTTTGTTCTCAACGACA
CATGATTTTCTCTCCTCAACCTCCTTGAGCAATTTCCACCGCTAGCAATACCTCATTTGA
TTACAGCATGGCATCTATCTTGTCCCGCAAGGTCGATGCTTCGTGTTCCCTTTTGATCTT
CTCCTTTGTCTTTTTGTCACCATCGGGCTTGTTCAAGTTTCTTGGGCCATCCTCATCTTC
ATCTTCATCCATGT