Map Locations of contig_138517 (6198 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_138517

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_7022 5 4759 bp AK362485 Available Available None





CDS Structure of MLOC_7022






Contig Sequence (6198 bp)

>contig_138517 6198 assembly3_WGSMorex_rbca.fasta
AAGTCTTGGGTAATCGAAATATTGATCAACCTGTTTGTCAAGCCAAGTGCCACCACTGAC
ATGAAAGATCATTCCCTTCAGGAATAGTTGCACTTGCATGTAGCTTCATTATCAGCAATT
TATAGCATAATTCTGTAATAGTTGTTTGAGGACTTCTGCACTTTTCTGGTAAACTTAAAA
ACATTAACAAATATGACAGGGATATGAAACATCAAGTCCAAAACAGTCTGAAACTATTGC
CGGCTGAATAATAATTTCTATTGGTCCTATGTTCTGCTGTGTTCTCATGCTATAGATCTA
TTTTTGTCCTGAATATTTCTGTACTTACAGTTACATGTTTGTTTTCCTGAATCTAGGACT
TGCCCTATTGATCTGAAGGAGGCAGTAGCGAGTGTTATATTTGCATCAATGAGATGTTCA
GATGTCACAGAACTAGCAGATGTTCGGAAGAATTTCACAAGCAAGTACGGGAAAGAGTTT
GCCGCATCAGCTCTTGAAGTGCGGCCTGACAGCGGCGTAAACCGTCTGGTATTTTTCTGC
TTTTCAGTTTTTGAATTGGACGAAGGTTTTGCAGCTGTATACTTTTCAAAACAATTATTG
TGCATACAGGTAATCGAGAAGCTCTCAGCAGGAGCACCGGATGTACAGACTAAAACCAAA
ACCTTGAGCTCAATCGCGGCAGAGCACAACATAAAATGGGAACCAAAAGCATTTGAGGAG
CAGAAGCAAAATGAGGATCGGATGGTAACTAACTGACCTGAAGTGATTTTGGGGTTAAGC
TTTTTGGCTCTAACCTGATATATTATCTATCTTGTAGTATGGATCAACATATTCTGGAGG
AAACGTTCCAACTCCGGGATCATCAGCTTCTAGTGTGCCAACTCCTCAACCTGCAGCAGC
TCCCTATTCATCTGTTCAATCAGCCACTTCTCGTGTGCCTGCAGGACCTTCTTATGAATC
TTCTGAAGCTCCAGCAAATAGAAACCCACATGGCACTGCCAACTCTAATGCTTCCACACA
GGAAAATAGAAGGGAGTCAGATGCTTCAGTGCCTCCTACCTCCCAACATGGTGCAACTAC
TTCCTCAGCCGATATTCCTGGATCTAACAGCTTTTCTCATGTAAATACTGGGAGTTCAAG
TGTTTCTAGACCTTACTCTCAATTTGGCACAACAGTTCCAGGTACGATTGAAGGTTATAC
TATTTTATTATCCTCACATTTTAGAGATCGCAACCAACTATTGAGGTTGATTTTGCATAG
AAAACCTACTCTCCAGGTTTATTGCACAAAGCACCACCTGGTGTAACCCGTTGCAGTAAG
CTCTAATACATTGTTTGATTACGTCGACATGATTCTTGATGAGTGGATTCGTCTTGTAAG
TGCACACGTGGCAAAATCAATCTTATGAAATCAGTCGGCAATAAAAACTAACAATATTTG
CAGTTTTAGTTGCTCATTACCATTTTGTTTAGAACTTAACATTTATAAGAATCCAAAAAT
CAGTAAATCGTATATATACATACCCAGTACTGATTTGAGAACTTTTTAGCTTATTTGTAC
AAGTTTTCAAGATATTGGCATTCTGTTCGCTCAGTTGAATTTTTTCCTCCAAAATTCAAC
GTTTTCAAGAAACAAAAAAAAACAGTAAATCATATATGTGCCAAGTATTGATCTGTTTTT
TTTTACTCATTTTGACCATAAGTTTGAGAGACAATGGAAATTTTAGTTACTCCGAGCGAT
TTTCGAATTTACTTTATTTTACCTAATTCTATCTACGCCCCAGGTGCTAGGAACAAAACA
GTTCTTTCCTTTTTCTGATCATAAAGAAGCCATATGAAGCTAAGGTTTCATGGCTAATGT
GCCATGTTTTTTTGCTGCATGTACACTTATCTGCAAGTATTACACCAATAAGGTGGTGTT
TTGTGCGACAAACCCGAAGAATAGGTGTTCTGTGCAAATTCAGCCCCAATAGTTGGTTCT
TTGTGCATTTTCCTCTGTTCTTCTTAGTTAATAGTTTATTTTATTTTTGCAGACCCAGTA
TCCAGGACTGAGGAGATCAACCGTCCCAGGGAAAGGAAGTCTTCAGCTAGTGGTTCCAAT
TGGAATGTGGAATTCAAGGATGCAGCATCTGCAGCACAGGCAGCCGCAGATTCTGCAGAG
ATGGCAAGCATTGCTGCCAGAGCTGCTTGCCAACTTGCTAGCCGTGGAAACTTCTATGCA
GAGCAAGATACCGGTGCTTATGAATCAGCTACTTATACAAATGATACAACACCCAGGAAG
CAACAAGCTGAACGTTTGATGAAGAATGATAAGAGTTTTAATGAGCAGAGTTCAGGTGTT
AATGATCCGACGATGATCTCAAGCAATACAAGAAAAGATGAAGAAAGAGCAGAAACAAAC
CGTGTGAGTAGCCAGAATATGTCAACTCCTTACTCATCTCAGTTCCACTCTTATGCTCCT
GAAAATCATACTGATATGTATGACATGCCAACCGAACCACATCGTGCTCATTCATCTGGG
CCTCCATATTTTGATGATTCATCTGAGGCTCCATATTTTGATGATCCGTCTGAGAAAGAA
AGCAATATCGGAAGACCTGAAGATCATCCGTTTGATTTGCATGAGGAAAGGTTGCCAGAT
GCTGGATTTGATGGGCACCGCACCAAGGATATAGGAAGCAGGCAAGGTAGCTTTGATCAA
GAGAGCAGGAATGACCACTATAATAATTTTGGTGCTTCCCACGGTGGCAGCAGTACGACT
TGGGACAACCAGAATGATAAAGCTGGAGCTGATTCTTCAGCTGTTATTTTCGATCACTAT
GACTATGATGTTCAAGAAGAGAACTTGTTTGATCGTTTCTCTTCAAAACATACTGAAGAG
TTACCAGCTATCCAAGACCACAAGGGATTCTCAAGTGCAGATTGGAGTCAGCAGCATAGA
AGTGAATCTCCAGTTGATCGTAGCACTTCAACTCTCTTCTCAAGAACAGAAACACAGCCG
CCTTATGATTTAGGAGCAAACAAAGAGGATATTCCCTTGAACGATACCAAACCACCTACT
TTTGATTCAGATGGTGTTAGTTCTGACGAGGAAACAAGTACAGACATGCAGATATTGTCT
TTAAGGACCAATTCAAGAGGATCTGATTACTCTGAGAACAGAATGTTCAATAAGAATTCT
GGAAAATTTGTCCCTGATGTTAATGATAGTATTGAAGACCATGAATCTAGGCCCAGGAAG
CAATACCAGAATCCACCAGGTTCTGATGTATTCCGCAAGGAGCAAAACAGTGACGGTTCA
CCTAAATATGACTATTCAGGGGCACAGGGGAACTTGGGTCGTGTGGAAAGTAGAGATTAT
GATCTTTCAGAAGAAGAAACAGAAGCACATAAATTGAAAGGCACGTCCTCAGGGATAACA
GGAGCTAATGAGAATCGGCCCTCGCCTTTTCGCATGCAAACTTCAGCGCCATCTGATGAC
AGTGATGATGGTGATCTCGGCCTGAATTATGGAAGGTTAACTCCTGGACTAAGAAACAAA
CTCAGGCAACATCCACAATACAAAATTCCTGGGGATAGCTTGCCATGTAAACAGTCCTTA
GAAGGAGCTCCTGCCAGCATTGAAGAATCAGTGCATTTCAAAGAGAATGGCACATCATCT
GAACAGACTGGTGATACTCATAAAGGTTCACGCACAGCCAAGAATTCTTTTGGTGCAAAT
TACCAGAGTGAACATCTTGATGGGAGACATACTGTTGGCAAACCTGTGGAATCAAGATCA
CCCATGACGAGGAATGACTTCTATTCAGGTGAATCAAGATCATCGTTGACGAGGAATGAC
TTCTATTCAGGTGAATCAAGATCATCCTTGACGAGGAATGACTTCTATTCAGGTGATACA
GGGAAGTTATCTGAACGATCTGGTAGTTCTCCAATACGTAGCCCAACCAAGACTTCTGTT
AAGGAAAATTCTATTCAAGAGCCACATCATGAAAGACCGGGTAGTGGGGTGCGCAGGGAA
AGTAGATCAAGAACTGCCAGAACTTTCTTTGATTCAGATGAGAGCGAAGAGGAATTAGAA
CGACGACAGTCTGGCCAGACAAAGTTGTCTAAAGAGCAGATACGATCACGCAGGACCCCC
CGGGAGGTAGCACCCGATACAAAGCGAGATGGCAGAGCCCGGACTGGAGCACAGTTTGCT
GTTGAAACTGAAAGCCCAAAAAGCCCTGCTAAAGCATTCTCCAGCTCAAGTACTGAAGAA
AGAAAAGTGGCACCTGTGTACTCCAGGGTTTCAGTACAGCAATCTTCGCCAAATCCTGTG
CGCATTGAACCTCCCATGGCTAGAGGCAAGTGGCAAGAAGATGAGCCGGAGGGAAGTTCT
TCTCCAGAAAACGAGGCAAACACACAGACCTCAGCAGATACACTGAAAGTAAGCACCCCA
ACATCTGGTCCTGCCCACGTTCACCCCAAGCTTCCAACAGACTATGATTCTTTTGCTGCA
CATTTTAAGTCGCTCCGAACCAATCGCCGTTAGGGTTACACATACACACACAGTTTGAGA
AGCTTTTATTGGGATGTCAGATGTGTACAGTATAGAAACACAATGGCTGGAGAGACTTAT
TGTGCCCTGGTATTTTTGTAAGGACACCATTCTTTCATTCTCTTTTGGTCTCAGATATAC
AGCGTCTTTGATAGGTGATGTTTTCCTTGTAGTGTTGTAATAAGCACATTATGCGCACAG
ATGTACAGAACTTCGGGGTTTCGTTCAATTTGTTTGTTTGACTCCAGTGTGGCTCAAGCT
CAAATCTTGTTTGTATGGAGGGGAATTGATGGCCTGCACTTTACTAGTTTTCCTTGAGAG
CAATGTCCCTTTCACTTCAAATTTGTGTTTAATTACTTCGGACAAACTTGGGAATTGTGA
CCCGTTCACCCTGCGTGAAGGTTTGCTTGGCTGTACTGGTACAATTGGAGATGGATATCA
CTCTAATCACTGAGCATGATGTGTTGTTGCCGGGCCTGTTCATCTCGACGAAAGGATGCT
GTAAATAATAATAAAGTGTTAATATCCTAGAAAATTTTAATTGCAATGTCTTAATTTGCA
GCATGGGCTATAATTTGTGTACAATACAAGAGGCGCTACAATCAACATAGTATATCTTTG
TGTAAGACAGTTTGGAGGAAATTTTGCAAATCTTTTACGGATCCATAAGATAGAAGGCAG
ATGAAGGAAAACATTAAAAATGTGATGGTGTGACAATTCAGCACATTAGCAACACTACAC
GTGACGATATTCTATGTCAAATCAACTTTGTACTTCCAAATATTGTTGAAAATATGAGCG
ATTTACCATGTGGTTTTACTAGCAAAAGTAGTAGATAAATCATGATTACCATGGCAATTA
TAAGACAAGTCATGTGATCATAAAGAGAGTATGCAAGTAGCATCTGAAGTAGTTAGTGGG
AACGGAACGTATCTAGAACAGAAACTAGAATAAAGAAGTTGCGGCAGGAACTCAAATAAG
AACACAAACACGTACTGAGTTGCAGAAGCAACAACAACAATGGGATTAACGTTGACGTCG
TCACCGGTCATGTTGTTAAAGAGGTTGTCGACGTCAGGGAAGAAGTCGTCGTCCGGAAAG
TGGTCGTGAACGTCCGTGGCATCCGTGATGAAGAAGCTAGTAGTCGCGTTGAGCGCTTCC
CAAAAACCTTATCACCCTTTTCCCATGCATGACTCAAAGAGGCGGGGTTTTGGTGACTTA
CTGTCCCGACCCGCGGTGCACGCCGCAAGCCGAGATGGGGAAGAACCTAGCAACAGGTCA
GAGGTTGGAACTCGATGGCGTGAGGAATCTCGTGTGTTTCTCTGGAGAGGAGCGACCTCT
CTTTTATAGGCACAGGAGAGGGGGTGAACATGCAACAACGGGAGGCGAAGCAAAAGAGGA
AGATGAAACGAACCGACAAAAGCTGAAGGGTGCAATGTTCGTATTTAATCTCCAATACCG
CAAAACTTTTCAGATCCCGAGCGACCTTTCGTATATCAGTTGTGCGTGGCAAAAATTTAG
TCATCGGCACGTTCCCGCGACCCGCAGCGCGTCGTGACGAGGTGGGCGGCGGTGGAGGAG
GAGGAACGCACATGTATGTCTCTCTTGTACTCATGTTCATACATGTGGAGAAACATCCTC
CCTTATAAGGAGGTCCAA