| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_138500
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_7011 |
3 |
1666 bp |
MLOC_7011.1 |
Available |
Available |
LOC_Os02g49150.3, FRAME:-3, EVALUE:8e-72, 13102.m05562 protein RNA polymerase Rpb4, putative, expressed |
| MLOC_7010 |
1 |
581 bp |
MLOC_7010.1 |
Available |
Available |
LOC_Os02g49140.1, FRAME:+1, EVALUE:4e-40, 13102.m05561 protein glycosyltransferase, putative, expressed |
CDS Structure of MLOC_7011
CDS Structure of MLOC_7010
Contig Sequence (7860 bp)
>contig_138500 7860 assembly3_WGSMorex_rbca.fasta
GCGGGGCTCGCGGAGAGCGGCGTCAAGGGGTGGAGGCGGCCGTTCGTGACGCACTTCACG
GGGTGCCAGCCATGCAGCGGCGACCGGAACCGGGACTACTCCGGGGACAGCTGCGACGAC
GGCATCCGGCGCGCGCTCAACTTCGCCGACGACCAGGTGCTCAGGGACTACGGGTTCCGG
CACGCCGGCCCGCTCAGCGACGACGTGCGGCCGCTGCCGTTCGATTACCCCGCGGCGGCC
GGGAGGCGCTGACAACGGAACCGGCGAGTCATCATCGATCTTTTTTTTTTCCTTTTTGAG
AAGAGTCATCGTCGACCTGACGAGTGGCGAGTTTTGTCTTCGTGCTGTTGTTGTTCAGTA
CACACTGGATGTCCGCCGTTTTCCATTTTCTCCTACTAATAAAAAGTTGCCCAGTACTAC
TATACACCACGCCGTTTTTTAGTCTTCGAGGGTTTATGCAGTGCTAGTACTAGTAAGCTA
GCAAAGCAGTCTCCCTCCAGAAGAAAGAGAAGAATTTCAAAAATAATAACAGAGATATTG
GATAGTTTGGAATCAGAAGATTGTTTCAGCTTTAGGCAGCAGATTCTCGTACAAAATAAA
TAAATAAATAAACAGCTACTCGTAATTAAAATCAGCTTTGGGAGCTGAATAGGGATTCTA
TCCATTTTCAGTGCAATTGGTTGAAGCACGCCCAGGCGCGCTTCAATAGCAAACAAGTGA
AGCCAATCCATTGGGTGATTCAAAGCCAACTGAAGCTGAAACAAAACAAGGCAAAGAAAG
GACTCAAAAGCAGAACTGGGAAAACATGGATGTCCTCAAAGGGGAATCTGGTTAGCGGTT
CAAATGGCCCTATGCGCGCACAAGCAAACTTTGATCGTCTATCAATCCGATCAAGCAGCA
GTCATATCTAAACGCGTCCAAAAAAAATAGCAAGTGAAAGTTGAAAAAAAAAACGCTGTA
CCAAATAAAATAGGTTTTATTTTCAATTCCTAAGAACAATTTGCTTAGCTAAGAGTTTCT
TTGATTTATAGAATTCTCAAAACAAAGGAATATAATAACACAAGATCAGGGGCATGCCCT
ATCTATCTCAAATCACTAAACTACAGGAATAACAACATGCAGGGTTTTCCTAAGGATCTA
TAAATCCTCAAAATCTCCTGTTAATTTCCTTTAAATCAAAGGAGCCCTAAGACTAAATTA
GATTTTATGTTGGTTTACTAGTCATCATTCTAGCTAAAACCATTGAACCTACAAATTCAA
TCTGCCCTACCAGAGACGTCGCCTACAGAAAACAAAATCATTTTCAAACTGCTCTACGAA
ATATACGACTCAAACTAGAAGTAAAAAACTGCACGAAGAGATACTACTCACAGAGAAGTA
AACAGACAAGCAGAGATGCATAAAAACACAGGCCACAACAACAGTTTTCATCGTTCAGGC
GAGCCAGGCCATCGGGTAAACCAGCAGCTAGACAAGCTAGTTTCCAAAAGTCAAGGTTCA
ACCAGCCAGACCTAGAGCTGGCACACGGGTGCATGGTGCGGCTTCTACATACAGACAACT
TGATTTCGGCTCTCAAAGAAAGAAGTCGATTTCAATGAACATCCATCCATACACCAGAGA
GACCCCCGTTCCAGATTCTTCATTGCTCGATCAGCTGCATATATGTTTAAGATTAATACC
CATTCAGAAATTTAGATCGTTAAGAAAGGCGGGTGATCAGGAAGTGGTGTGGTTCAAAGA
TTAATACCCATATACTTATCACAGCTGAGGTTCACTTGGAGGCTTTTATTTTAGCAAGGG
CAGTAAGGGCCTCCGCGATCTTGCCTTCATTGATCGACCTAGTGGCCTGTGCAAAGAAAT
TTGGATTTTGCAGGACTGAGTTCCTATTCCTGGTAATATATAAAATGGCATGTATCCCAA
ATGTCAGCAAAAGACACTGACCTTGAGAGACGGTATGAGTGCATAAACCTCTTCAATGGT
CTCAGGCCCAATGTTTGCTATCATGCATATCTGTTACAGATACAACAAGCCATTTCATGT
CGAGATGAGGGAAGTGAGATAAAAGGTGAGAGGAAAAGAAGGGTTACGAACCTCGCCATC
ATTAACACCATAGTCTTTAAGGGGTCTGCAGTTACGAGTCAAGGAAATTAACTACAAAGT
GGTTGCTTGGCGAAACAATTTAACTGCGTAACCACATGCAATATCTAATACTAGTCCTTA
ATCAAAACAAAGGATACTCCAGGATTTCTTTCACCAACTTCGCAGAGGTGAAGTGATTCC
CTTCTTTTGCATATAGAAAGGCCTTGTCGAACGACCTGCCGGTGCAAGAAGAAAAGAGTA
AACATGAAGTCACACAAGCTAACAGACTGGAACACCACATAAACAATTGTTAGCGGAACA
TAACAGAATTAAAACAAAAGATGTTACTTACTCGGGAATTTTTATCTTTGGATCCTCTGA
TAAGATAGCCATATGTTCGTGAATTTTCTGCAACATTTCTGCTACTTCACAGTTCGTTAA
CAGTTTAGAATTTGGAGACATATCTGCAACCAATTGTTATGCGGGAATCAGCTTGCCTAA
TTTTTGTTTAGACAGAAGGGGCGTTTGAAAATCATAATATAAGATGTGCGCCCGTTTCAA
ATGATGTAAAACTAACAATTTCATTATACAGAACTTCTCAAGTAAAGAGCCTACTGAAAT
TCCATAAACTACCAAACTTTAACTACTATTAAGGTTACTATGACAAAAATGAGTTTCTAG
AAAAATAGAGGATATTTCAATGGAAGGAACTGACCAAGCTGAAGCTTTAGTTCTGCATCA
GACATTGCAGGCTTTGCATTTGATGCGGAGGCCTTCCCACCTTTCCCAGCACTAAATGCC
TTCCCTCCTTTGCTACCTTCCCCTATGAGAACATAATACATGAATTTAAGATATGCAAGA
CACAGAAAGGTAATCTATTGTATAACAAGAATTTTCAGTTTTATCAGCAACTCTTGAATG
GATGAATGTATAGCAAAGGTACAAAATGATGCATCCATACCATTAGAAAAGGATGAACCC
TTTCCACCAGTTTTTAGGCTATCAGATGAAGCTTTCCCATTTGACTTGGAGTGTGTGGGG
GGAGCCTCTTCTTCGAAAAAATCTAAATACAGGCAGTGATATATGAGGTTCTTGTATATT
TCAACTATATATCAATATATTATTCACACTGACTTATTCAGCTTCATTCAACTATCCAGT
AAATTTTAGTGCTTATTTATATACTGTGATCAAATACTGCAACAGTTACAATGTAAGCAG
CTCAATGATTACCATTTGTTATGCACAGCCATAAATTGGTGAAACAAAAGAACAATGTCT
TGCCTTCAACTACAAACGATATGAAGTGTCCTTTCACACTCAATGTAATGGTAAATAACA
TCAACTATGAACAAATAGTCAACGAATCATCTGCAAATAAAAGTTATAAAACCAAAGGGG
AACCACAAACATGGTATATAATTCTCTTCCGACATTTGTTCTGTAGTATTTGATCAATCT
TACGAAGGCTGCCAAGATAAGCATTCTGCGAGCATAGAAGGTTGTGGGACTCTTCTAGTC
AAATGATTCTTTACTGAAACAGAAAGAATCATTTCATGTTTTCAAACATAAAAGTTTACA
ACCTTCTTGCTAAAGATGCCCTAAGCCCTAGGGTAGCAGGGTACAACCGTACAAATGATT
TGTTCTTGACAGTGATAAATGAAACACAACGGATGCTGATCATGTCAGACAGATAGCTCG
TAGCGTGCTAGCAGACAAGTGATATTCTTATAACAAAAGCAAATACCAAAGGATTTTCTC
ATGGAGCAGAGCTGTGATAAGTGTAGTAAAACTAGATTTAAATAGAACAGCAGCGAACAC
ATGTGACTTGGCATGCCCAGAATGCCAAGTAGCCAGACAGACATAAAACATATCATAAGA
AGTATAATGTGAGTTGAAAATAAAAAAAGAATTAGTCCAATAAATAAACTGTTGCCTGGA
AAATGTTTAACGACAAGATTGGGCAGTATTATTACCATCAGAATCAGAATCAGAATCAGA
AAGGTCAATAACATCTTTAGAATGGTTCTGCCTTCCGTTCGGTGCTCCTGTAAGAATGAA
CCAATTAAGAAATCTGTCAAACTCTAAACTTGCCTTCGAAAGCTCACCTTCTAAAAAAAC
ACAGCATTCATTTTGATTAAGCTGTAAAATCATCAACCATCATATAGCAGGATCATACAA
CTGAATAACAAAAAAATGTACCATAAAAGACTCAGATTAAAAAACTTCCCTCTCAGACAT
AAATACCTTTATTATGTTCGGGTTTGGCACCTGAGGCAGTACAGGGGTTGTCATTCCGGT
TTGGTATGGCAGAGGATATTACTGTGCGGGGCATGGGATGTCGAGTATCGTGCGTGTTTT
GAAGGTAGTAGCCGTGCAAGGCGGCGCTGGGGTTGGCGCTCAGGTTCAGATTTGCGTTTG
GGTTCAGTGTGTAGATGGAGTTGCCTGAGCTGGCCATGGGAGATTGGCGATCCTGCAGGC
GGCCCACGGCGGCTCTGAGGTTAACACTCAGGTTCCGGTTTCGGATGTAGGAGTTGACTG
AGTGTATGGGGTATCGGAGATCCTGTGGGTGAAGGTAACGGCCGCGCAAGGCGGCGCTAG
GGTTTGCATTTAGGTTTGGAATGGGGAAGGAGATGGCTGGGTGGGGCATGGCGAAGGAGA
TGGCTGGGTGAGGCATAGAGGGATGAAGATCCTGTGTGTGGTGGAGGTAGGGGTCGCCGT
GAAAGGGAGAGGTGGATGAGGGGTGGGAGTAAAGGTTGAACGGCGGCGGCGGCGGACCGG
TAGCGACAGGGAACATGGGCGCAGCGGTAGGCGCAGGGTTAGGAGGCGACCCGAAGAGAA
TACCCATGTCGAAGGGAGGATCGGAGTTGTTAGTGCTCGGATTAGGGTTAAGGTTTCTGG
CTGGAGACGCCATGGGGGGCGGCAATGGAGTAGATCTGGAGAAGAGGGGAAGAGGAGGAA
AGTTGGAGGTGGGATGAAGCAGAAATGGAGGTCAATAACTCAAGATATAGGCGGTGGTTG
TTTTGTTGCTGTTGTGCCCCACAATTTTACTTTATTTGCACCCCGCAATTTAACTTTATT
TGCGCCCCGCAATTTCACTTTATTTTGACTTAAAGCCTCTCAATTCCAAACAAGTTGCGG
TAGGCTAGAGTTGAAACCCATAAGATCTCGAAACCAAGTCATGGTTCCGCCACGTAGATA
GCTAACTTCCATGCACCCATGCCCACGGCTAGTTCTTTGGTGATAGTGCTGCTAAATATT
GTTATTTTAAATTAATTCCAAAACCACCCAGTACAATATGCAGACTTGATGCATGTACAT
CACTCCATTCCACGCATTTCAACAAGACAACAAGGTTATAGTGTGTGTTTCTAAGATGCT
GTGAAATAGATAACCTATTGCTGGTAAACATCCAAGCATATTGGTGAGGCACGAAGACTC
ATTGACCCTTACCCCGCAAAGGAAGTTACAGCCAATCCTCCGTTGGCCGAGTGAGTAGTG
CTCGGACCACTTCAAATATGCAAGGGATAAATCATCATGCTTGGCATGTCATAAGCCGTT
CTAACACAGGTACGAAAAAACGCTAACTATCACAGAACCACGAGCATATCACACATGTGA
TATTTCAGAAAAGGCATATACCTCAATTTCTAGTTTAGTTCTACATTTGATCCAAGGATT
TTTCCTTTACCAAAATAGTGAAGGTTGGATTAACTATGGCGGTGGTGCTTGGTTCCTAGC
CATACTTTGCCACGTATCAAGCTAGGCAAGTTTGACCAAGTTAGGTGGGTCCACATGTCA
TACACATAAAAAGTGTTGCAAAATTCCCTCGGGCAACCCAAAGTGAGGCTAAAAATGTGA
GCACCTAAGCTAAGGCAAGTGTGGCAAAATTAGTCAGCAGCCAAACATGCCCAACATTAA
CAGGCGATCTTCCTCAGCAGAGCAGAAAAAAACAAACACATACACATACACACCAAGATG
CTCAAGCATGGAATTTAAATACACAGACCAAGCTTATGTGCTTAACTGCACCAAAATCAA
CAAAACTTCTTCCAAGGAACGCATGCACAACACATCCACGGATATTCGCTCTCTTGTTGA
AGGGAAGGACCATTCGTTAGACTAAAACCCTTAGGAATCGCTAAATTTAGCCATGCACTT
GTGCATAAACACAAATGATGCATTTAGAGTTACCTTATTCACAGGCAAACAGACGCAAAA
CCTAATAGTCTGCTAGTGATTCCACAATGCCCAGCAACGTTTAATGCATTGTCATTTTGA
GCAAGCTGTGTCACGATCAACTAAATCATCTACTTTTCCAGTTTTCCTTGAGACACCAAA
TTATAAGAAGCCACCCACATATGAGTGTGACGCAACCAGTAGCAAAGTTGTTAAGATTAA
TTTCGTAACAAATATTAGCCAGGTGTATTTCTATAAGCGCACATAAACAGATAATCCAAT
CCAATTCCACTATCCAAAGGGCATTGTGCTAGGAAAAAATCTGAAGGACTTGAACCCTCC
AAAAGTCCTACAGTCTGAAAGAAGTCCTGAACAAACAGTTCTGTTTTGTCATGGATATGT
CACACACTGACACACCCATAACAAAATCCGACCAAAACCATATAATAAACAACCAAAGCA
TAGGCCCTCGCACCGATCAAACTGGATCTAAACCTTCTCCAGTAGCCAAAATTCATATCC
TTTCGATGCCGACCCGCCAGGGCACCAGTACCGTGACAACAAAACCCTCGGCGTTCTGCA
AACCCTAATCCCTAGCCATTCGCATCGGATCCTACCCGATAGACGCCGAAGAGCCCGACA
CCCACCGGGTTTCATCCGGTGAAGGTCGCGTTGGTCGACGGTTGAGACATCGACGCAAAA
AAGAAAGGGGGGGAAAGGGGGGATAAGACGAAAGGGGGGTGAACGGAGATCACCTGACTT
GGACGGGGGATACGACCCTTTCCCTCCCCTGTTCGCCATTGCCGCTGCCCGCGGAGGAGA
AGGCGGTGGTGATCGGGAGGCGCCTGCCGGAGTCGGTCAGGTCGCTCTCCGCACCGACGC
CGCACGCGCCCCGCTGCTCACTGTTGGCTGTCGCTGGGCGAGGAGACGGAGAGTGGGAGT
GCCGCTTGCCTCTGCCCGGATGTATTGACGGATTTATAAAGTTGGGTGTGGTCGGGCTCT
GGGCTCGGATCGATTATGGGCCCATACATAAGATACAACCATGCTTGCTCGGATACAAAC
AGGAGAAGAATTACTAATTGAGGAATACTTTTTTAAAACATCATCCTCAATTTCCAAATT
GTGATAAATAACGCACTGTATGTATGCCACTTGTCATAACTTGAATTTTTTTCGGAAATC
CGTATGTTTTATCTTTTGAATCGTGTGCTTAAATTTTGAATCATTTTCACCGTTGAATTC
CTCGCTCAAGATCTTCAAAACTAGATCTCATGTTGGTAGGTTTTGACGAACTTTTTTTCG
TAAAAAAACAGACGAAAAAATCATATCTCTCGCGGAAGAAAAAATATGATTCCGAGAGGC
ACGGTCATGCCTTTCGCGAAAGCAAACATGTGCCTCCCGCGAAAGCAAAACCGTGTGTCT
CGTGAAAAAAAACATTTCTTTTCCGTTCCGGAGAGACACGGCTGTGCGTCTCGCGAAAGT
AATTCGTGTCTCTCGCGAAAACAAAATCGTGCCTCTCGCAAAAGAAAAATAATATTTTCT
GTGCCTCTCGCAAATGAAAAAAAGAGCTTTTCTTCCAATGCACAACCCCCCCCCCCCCCC
