| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_138482
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_7003 |
2 |
847 bp |
MLOC_7003.1 |
Available |
Available |
LOC_Os03g56540.1, FRAME:-1, EVALUE:5e-65, 13103.m06170 protein heat shock protein DnaJ, putative, expressed |
| MLOC_70077 |
5 |
2063 bp |
MLOC_70077.2 |
Available |
Available |
LOC_Os10g09850.1, FRAME:+3, EVALUE:1e-177, 13110.m00868 protein EF hand family protein, putative, expressed |
CDS Structure of MLOC_7003
CDS Structure of MLOC_70077
Contig Sequence (7283 bp)
>contig_138482 7283 assembly3_WGSMorex_rbca.fasta
TTCAGTGATGTTTCGGTATAGTTAAGTTATAGGTGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNACGGACGTCCCGAGGGTTTTCGGAATGGTTCGAAAACGAAGATTGA
TATATAAGATTGTTTCATTTGGCCTCGAAAAAGATTTCACGGGTCCGTTGAAAGTTCATC
TGCGCCCGAGGCCGCCTGAGGCGCCATGCCGCCGCGTCGTATGCGCGGGCGGTCTCGAAC
GTGCCAAGCCCGAGGCACGTGTTGCTGGAGCGGATATCCGCGTAAAACATGCCGAACGGA
CGGGGGCGAACACCGCGGAACCCCGAGCTGCTCCGGGGCGCGGCGGCGACGAGGCGCTGT
AAAAGCGGGGGAGAAGGATTGGCGACGGCGCACCGTGGGCAGAAAGCGCGAGAGGGAATG
GGGCGGTTGAAAAGAGCGGGATTTATAATGTGCACTTGCCGACGCGCGCCAAAAAAATGA
CGCACGGGTTGCCGCTTTTCTCCGTACGTGGGATTTTTTTTCAACGCGCCACCGTTTCAC
GGGTCCGTTGGAATGTGTCGTGGTGCATGAAAACAATGGTTCTTATCGCCCATTTCATCT
TTGACGTCTGTGTTTAAGATCAGGGATGGACCCAGGATTAGGTCAAGCCCAGGCCCTAGG
CTGGCTACAACAGCACTAAAAGTCCATGCTATTGTTAATTAAATACAATATTAATCTCCA
CGCCTAGGGCCCAGGACCCCGCCTGGGTCCGGGATCTGTTAGTGTTGAAGATGCTATAAG
AAATGTAGCGCCATGTCCGGTGCGGTGCAGTTGGTCTGTAGCAAAACAAAATACAGTTTG
ACTTCCATGGTCACGCATGCATGAAGACAACATCCACATGAAGGTGACCACATGAATCCG
ATTCGTTTCTTCTCGGAAGGTGCGGTTAACCAACCGAAACTTTGGAAGCTTTTGGAACCT
CGACCGTTTCGGCGTTTCCCATGGACATACACATCACCACCCACGCGTACGTACGTCCAC
CAGTAACAAAAACACCTATGCCGCACCAACAACAGCAAAGAATACTTCTCCCTCCCTCTG
CTCTGATGTTTGATCATCCACTTTTCCATGCACTTGCGCCCAGAAGCCCCATGTCACCCT
TGTGAAGCTTCGAGGGAGAGAAAGAAAAACGGCGCCTTTGAACGGTTCTTGTATACCCAT
TGTGAGACGACGTCGGATCGATGATCCACTTCTCAACACAGAAAAAGGTCATGTATACCC
ATTGTGAGCTTTTTACTGGTGTGCTGCAGATTAGTCACACGACGATGCAAGTCTGTATAG
ACACATTTAAGCAAAGTCAGTGGATGTGTTTATTTTTTTAAGTTTGAGATGACTGAGTAG
TAGTAACTAGCTAGTGTGAATTCTAGCTCAAGCAGCATATTGCCGCTTCGTTTTTCATAA
GATAAGCGACACTTGTCGCCCTTTTTAGGTTAACCATGGCTCGGGAGAAGCGACTGGTGG
GTTTGTTGACAGGATATGTCGGCCGTGACAGTAGATTAGCTTAATCCGTCCGTGCTAATC
CATACTTAATTAACGTGTTAGAGTTCGATTGCACTTGGGAACCAAGACTAGGTAAGAATA
AAAGATGCATATCTTTTGTTTCTATCACGTAGCACTGACCAGAGACAAGTGTCAGCTATT
TCCCGGGACGCCGATAGAAGAATCTGGGACGTGAATATTGAGGCTCTAGAATTGTCATGC
TTTTCAGACTGAAACCATACAAACAAAAAACATGTAATCAACTAAGGAGATAAGTTTTCC
TAAGCACGCTGATTATTAGGCCCTGTTTGATTTCAAATAAGTCACCAACTTATAAGTTGA
AAAGTACAAAAAGTGACTTATTTTGCCAAACAGACCTAACTTATAAGTCATCCCAACTTA
TAAGTCATAAGTTGCTCCATCCCAATTTAAAATTTATAAGTCACCCACTTTTACATGAGA
AGGTGATTTATAAGTCACCTGATCGACTTATAAGTCACCTGACTTATTGAAACCAAACAG
GGTCTTACATTAGCCTGGCCACAGATGTCTGGTGAGCTTTGAAATTTATCTCTTCTTTCT
TCAGAGATTTAGACTGATGGACATATACAAAGCATCATAAACTGTACGAAAATTATATCC
CAGCCTAGCACTCCCTCTGTATCACAATACTTATTGTTGAAGAGAACTAATCTAGCTCTC
TTTAACAACAAATATTTAGGAATATTTAGACGACTGCCGAGTAGTAAAATCACAAATGTA
TATTAGATATATGGCTACTATTTCTGACGTGTGGCTTCAGATTTTTTTATTATTATTATT
TTCTGATGCCTTGTGGAATTCTTTGTCACCTATCTTGTCAAAAAGATGGGCATATTATGG
CCCCTCTGAACCATACGTATACACCAGTAGAAGTTGAGTTGCTCACTTATTTTTCTTTCT
GCGAAACAGTTGCTCACTTCTTTCGGTACAGCAGTTTCTTGTGTTTTGTCATGAAACAGT
GGAGTGGGTCAACCTTTAGGTCCTTTCTGTCCACCCAACTTATTGGAGAAATACTCAACA
TCAATAGGCGAAAATCTAGTTTTGCGCCTAATAGTTCATTCAAGACTGTAGTTCTTAGCA
ACATAACTTCGTGGATAAGAGACTCACAAATGCTGCACAGTGATGCTGCTGATACTGTCA
AATGTGGCAACAGGCCTACATCTCATGACCCCTGCCCTGACTCACTACAATTGATATGAC
CTTGAGTGGTTCAGTGCAGTTATGCTTGTTCTCTCCTGCTTGTAGCCCAAATCCTACTGT
TAAGTCAGAAGAGCAACTGCTGCAAAATTATAGCAGCAGCATAAGGATAGTGTGATACGG
TACTATGTAACTAACAATTGCACCTAGTCCTGGGCAGAAGGAATAGCCGGGAAGCCAGCG
CAAATTCGATATGATGGAAAGGGCCAAGCAGCCACAATCCATTCCAGCCATCGCGTTCGA
TGTCCGGTGACTGAATTGTTCCTTTCAGGTTCAGCTGTATCTTTCCATGAGCCAAGGGAA
ATGTGAGATAACTATGTGACTGTTTTCAGGTCTGCTCAAGCTACATAAATCCTCGTCGCT
GTCAGTCGTTTTATGCATGCATGTGATGTTTCTTGTTTCTTGCGAATTCTTCGCCGCCGT
CGATCCCCGAGTACAGCGGGAGGAACTAGGCTGGAAGCAAAGAGACCAAGATGAGGGGCC
CCATTCTTTTGGAAGTTCTTTTGCTGATCCCACGGACAAGATGATGGCTAAGTATTCAGG
ACTCAGGAGGAGCAAATGCAGATGACCACCCAACAGTTCTACTTTTGACTGGACAAATAG
GCAAAGGGTTGAATATTTTGTACTACTATAAGACCCTTTGTGTTGTCAAATTTGTAAGTA
CTTGACACAGAAGATAATATTTCATATAGTGACTTCTAGGTGTCCTCAGAGAGATCTATG
ATTTGGTCAAGAAAATCGACCCCGCCAGTCACATGATGTGGTCATCTACTTGAACTAATA
GTTAATTACTTAAGCCGGCTGCATGTTAATCACATGCTGATTTACTCCCAGGATAATGTC
AAGGCCATGATTCAGGGTTCTTTTATCACAGAAATTTTACCCCAAAAGTGAGAAGTTAAG
ATAACAGTTCTATCTTAGGATTTCGGACTGCCTTGATGCATGTGCCTGAACAGTGAGCTG
CGTTGTTCATCATCTTCGTCAGGTATTATTACAAAATTACACTGTTACCACAATGTTTTG
CAGATTGCAGTCTATCCGTCGTCAGAAAGTTCGACGAACTTCAAACATTATCAGTGACTG
GTTGAATGTTCGACGAACTTCAAACATTACCAGTTTACCACAATGGTTTGCGGTCTTTCT
AGGTTCATGATGAGCATGCTCTTAATGAAGAGTTGAACAGAGTTGATGCAAGCTGCATTG
TATGAAGAATGTCTGCTACTACATGGTGATGACTCATACACTAGATTTTGACACTGCAAC
AATGTCAATTATGAATAGGTCTGGACCATTTCTGCAGTCATGGACTAACTGATCAACAAA
ATTAGTTGGAATACTGCTCGAGAGCTCCCAACTGAACATTCTTTATTTTCTAGAACAGCG
TAAGTGCCCATAAAGAAAAAAGAGTAGACGTTATGAATTGCATGAATCCTTCCAAAGGAA
GGCGGGAATCTGTCCCGATTCCCACGGAATTGAATTGTTCTCTAAAGCTTCAAACTTCCT
GCTTTCACATCAGTTATTTTCGCCAGGCTGATGACAAGAGTTGAATTTTTGGGTAGAAAC
TTGGTGTCAGCAATTGCGCAAACAGGATTTCGGCCAATGAATTCTTCAGCGTGCCGAAAA
AGGTAAGCCAGTAAATATGAATTGCATTAATTATTTCGACAGAATGCAACAGTCCTTTTT
GATGCCCACGTAATTGAATTATTCTTTGGAAATTTCAAACTTCCTGCATCCACAGAAGGT
ATTTCTGCCAGATTGATGACAAGAGTTGATTTTTGGGCACAGAATCTGGGTTATCAATCT
GTAGTGTGAGCAGGAGTTGATAGATTTATGATAATACATAAGTTAGTTCGAGATAGTGAA
ACAGTGCATATTTAACTGTTACAAGTCGCGCTATGGATGAATATTTGACAAACGGCGGTC
ATTTTGGTAAGATATAACCTGAACTCTCCCGCCCAGAAAAGCTATAGCCTAGTGAGGCTT
ACAATATCAGAGCACTGCAAATTAATCTCCAATGAAGCTTCCAACTGGAGCTTAAATGTT
TGATGCGGATTGTCCAGCAAAGAGATTCAGTGCAGACTTTTCGACATTTCGACAAAGAAT
GTCCACTGCACCTCTCCATGCTATGCATTTATTGGTAGCTTTGACACTGCAACAATATAA
TCATCACTGCGTGCTGAATTGGACGTTTTGGAGGAGATTTATGGTCTTCTATGAATTATT
AGTCCAAGAAGAAACCGAAGGCTGGACAATTGTTACAACAGAGAAAAGATTATCCTGATG
TTTGAAACATCTTCTGACGATACAATCATAAAAAGTTAATACTTTTATCGGCGATGACAT
TGAACAATGGGAATAATCAGAAACAAACTGCTAACACATCAGTAAGGAACAAGCCCCAAA
TATACAATATTTCAAGTAAGACAGCCCAATTGTCACAACAGAAGGTTATATTAGCATGAT
AACTGAAGCCTCTGGGTAAACTTACATCAGCCACATTACTCTGTTTCTTCCATAACGCGC
ATCTTTGTTCAGATGCACGGTATCAGCACAACGATGTTAATGATGTCAATGGAAAGCGAA
TCACTACCTCACCGGTCACTGCGAACAATGCAAAATAACTTCCATCTCGTATGCACCGGC
TAAAAAATGGACCTGGATTTCCCCTTCCCCATGAGCATGTCCTTGGCCTCGTTTATCTTG
GACGCAATGTAATGGCTGCCGCCACCATCAGGGTGATTGGCTACCATCACCCTCTTGTGC
GCCTCCTTTATCTTGTCCAGCGCAGCACGTTCTCTGAAACAACGACAGTTGCGTATTTTT
CAGCATATCTCAATATAACTCAAAAAACAGCTGCACATCATTTAGTCGCATAGGATTTCA
GCAGCGACATTTTCAAGAAGATACAGGTTAATTAGCAAGGACATGGACGGAGAAGAAACA
TCACCTTACGCCAAGGATCAACGCGGCTTCTCTTTTGCTCATCTCTGTCTCGAATCCGCC
GGGGTAGAATTTACGCACGCGTGGCATGGCCGCGCGGATTCGAAAGGCCTGCCATGCCTG
AATCATGTATCTGCTTCCCATCGCAGCCGCAGCTACCGACAGCCCAGCTACCAGCGGCGT
AGCCTGTGGTATCAGAGAATGTTGCAGCGCACTGATCAGACCGATGACGGTGCTAAAAAT
TCAGAATCATACTGTGAACATGACACGAGTAAGCTTGTGAACTGTGTACAGGTTCAATTA
TGCATTCCGAGTTACAGATACATAATAATACAAAAGAAATTCGTCTTCACACAACTGCAA
ATTGGACCCAAACAAATGATTTGGTCCAACCACAAGTTACTGAATCCATGTCAGGTACAT
GAACCCAGCCAGGCTAAGACTGATATCGCTGTCCGGCACTGTTCGTCAGGACCAGCGCGG
CGCGGGGGGTCAAGGCTGCTGCAGTGAGCGACTGCTGCCGCCTCCCCGGACCAGCGGACC
ACGCTCGCCGCCGGGCCCAGCCAGCGCCGACCCGGTCGGCGGAACAGGAAACCCCATCCC
GAATCGGGCAGACGGGCCGGCAGGAAGTTTCCCAGACACTGTCGCCGTCCCGCCGCACGT
TGCGCCCAGCCGGCGGGCCCGGCTCGGGAGGATTGTACCCGAGGAGACGGAGAATCGCGC
GACCGCCACCGCTGCCCCTGTTCTCTACACCCATCTATCTATCTAGCGACAGAGGCCGGA
GCCGCGGGGCACGCACGACAGCGACGTACGCCGGATCTTCCCTAGAACGATGCGAGAGCG
AAGGGCCGGGGCGGAAGGGGAACGTACCATGGCTCTAGCGAGACGGCGGCGAGCGAGGCG
AGGAGAGGGCGAAGCAGTCCCGTACGCCGACGAACTCGCGGAGGGAATCGGGGGAGAAGG
CGAGGTTTGGATGGCTGTGTGGGCGGGGGGTGGTTGCGGATTAAGGCGCGCTCTTCTTGT
GGAGCAAGAAAGAATCGAGTGGGAAAAGGAGGAGGAGGGGTCGGTTTCTTTTTTTAATTT
CTTCTGTTTGTTTTTCGTTACAAGGAAAAGGAGAAATTGGTTGGTTCAAGATATCTTGGG
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAATATTATGCGGCGGTGGAGGGGGAGGGGGAG
GGGGAGACGGTCACGGAGTTGGACTCGTCGAGGACACGCCAGACGCTTCTGGAGAAGGCT
GGAACCCAGCACGCCCACGAGCCATCGAAGGGATCCATCCAGCGCATATGGGCCGGCCCA
CTCTGCCGTTTATTAGTCGGGTTTTCACCCAAAAAACCGACTGTTGCTTTTTAGCCTATA
GATGTTTTTACTAAAAGCTTCAATATATATTTTTAGAAAAAAATGCAGTATGTGTTTTGT
TTTGCAGGGTGAAGGCAGTTTTTATTGCATGTCGTAGTGTTATAATCAAGAGGCCACAAA
TCTTTAATACAAGGTGGAACGGAGTGTACCAACATAATCAGACCTTGTTTGGTACTAGTG
TTTTTGAAGAGATTGGTGGGGAT
