| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_138414
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_6972 |
3 |
5328 bp |
MLOC_6972.1 |
Available |
Available |
LOC_Os01g65890.1, FRAME:-1, EVALUE:0.0, 13101.m07127 protein DNA repair metallo-beta-lactamase, putative, expressed |
| MLOC_69777 |
2 |
1208 bp |
MLOC_69777.2 |
Available |
Available |
LOC_Os05g31620.1, FRAME:-1, EVALUE:4e-78, 13105.m03246 protein OsCML15 - Calmodulin-related calcium sensor protein, expressed |
| MLOC_6971 |
2 |
5487 bp |
MLOC_6971.1 |
Available |
Available |
LOC_Os01g65900.1, FRAME:+2, EVALUE:0.0, 13101.m07128 protein chitin-inducible gibberellin-responsive protein, putative, expressed |
CDS Structure of MLOC_6972
CDS Structure of MLOC_69777
CDS Structure of MLOC_6971
Contig Sequence (9200 bp)
>contig_138414 9200 assembly3_WGSMorex_rbca.fasta
TGTGTGTGTGCGTCTCAATAGATTTGAGCAGCTTGCTGATTCAGGCTTCATCGAAGCTCG
AGCAGGAGTCGTGCAGATTTATCTTCTTCCTTTTCGGCGAGCATATATAGCATGTTATTT
AGGATTTTTCACGCCAAAAAAATGTTTGTGGTGCGAATGAGCTGTACTTGGTTGATATTT
TGTCTCCGCGTTTCTTGTGTATTACTCTAGTCTACAACTTATAGTAGTTAATTTGTAAAT
CAGCTACTTGTAGATGTGATTATTCCCGCCTAGTATTCTTTAAGACCTGGCAATCGGTGG
TCAAGTCTCCGTTGCAAGTTAGTGGCCTACCATGCCCTCCGAGCTAGTACTCCACTTTCT
ACTCTAGTTGCTAAATGTTTTATCAGAAATAGTTTGCAACATGCTATACAGTATTCGAGC
TCCATCAACTAACTAGCGATTCTGATTAGATTGCTTGTTAGGTACGAGACTGTGACCTTA
GTTCAACAAAGTTAGGTATGTGAACAGGAAATCCACAGGATGGGATTAAAAAACCCAACA
TATTAGCTGTTTGTACTCTTCTTTGTTTGCACTCTTCTTTGTTCGTATTAGCTCAATGCC
TACTCTTAGGGTTGGTGGTTTTGCAGCAAGATGGCACTGTTAGAGAATACTACTTTGCTT
TTTGCTATGAAAAGTAATATTTACTTTACATAAGATAGAATAATACCTTCACAATGTTCT
GCCAAGTTACAAGTAGCACTATGTATGTCAGCTCATTGTTATTTGAATAGGTTGCTGATA
CTTCCTTATCTTACTGTAGGCATCACAGAAATTGCATTGGGTTGGATTTAATCTGAAGAA
AGAAGGCCTCAGGATATTTAGCTTGGCAGGCCCAGAGGTGCTTGAGAAAAGCTATGTCTT
TTGTCGGGCGAGTGGACCCGTCAACGACATACGCAGATAATATTTATGTACATAAATTCG
GTGCACCAAACTCAAACTTTGCTGGAAGAAGATTTGGCTCTGATACGCAGTTGTTCCATT
ATGGCCCCGAACCATTCAATTCCGAGGACTATGGACATATGGGTTTCCCTGAAGCACCAT
CTGCTGCATTCCAGAACTCCTTCTACAATCAGCAGGCCTCACTGACGCCCTGCTCTGATG
CAGCAAAAGACTCACCGGTGTGCTCCAATATCTCTCAACAGAACTCCCAGTCTATATCAG
ATAATCAGAGTTCTGGACTTGAAGTAGAGTTCGATCCTGAGATCAGGCTGAAGCTTCAAG
AGCTGGAGCATGCTTTACTTGATGATGGAGATGACATCTTGTTCGAAGTTTCTCAGGCGG
GTTGCATCAGTGATGAATGGGCTGACCCCATGAAGGATGTCTTGCTTGCAAATTCTCCGA
AAGAATCGGAATCAAGCATTAGTTGTGCAGGTAGCAACAGCGGAGAAGCACGGACCCCAA
AGCAGTTGCTCTTTGACTGTGCTACGGCATTAGCTGAATATAACGTCGATGAAGCGCAGG
CAATCATAACGGACCTCCGGCAGATGGTCTCAATCCAAGGGGACCCTTCTCATAGGATTG
CAGCTTATCTAGTGGAGGGCCTTGCTGCAAGAATAGTAGCTTCAGGGACAGGCATCTACA
AGGCATTGACATGCAAGGATCCTCCAACTCTGTATCAGCTGTCAGCAATGCAAATCCTCT
TTGAAATCTGTCCATGCTATCGATTTGGTTTCATGGCTGCGAATTATGCCATACTTGAAG
CCTGCAAGGGTGAACAAAGGATGCATATTATAGACTTTGACATCAATCAAGGCAGCCAGT
ATATTACACTGATGCAGTTTATGAAAGATGATGCAAACAAACCACACCATTTGAGAATAA
CTGGTGTGGATGATCATGAGACAGTACAGAGGACTGTTGGAGGTCTGAAGGTCATTGGGC
AACGCCTGGAGCAGCTTGCAGAAGACTGTGGAATATCTTTTGAGTTCAGGGCAGTGGGTG
CTGACATCGGGGATGTTACACCTGCAATGCTAGATTGCCGTCCCGGGGAAGCACTAGTTG
TGAATTTTGCATTCCAGCTGCACCACCTTCCTGATGAAAGTGTTTCGATCATGAACGAAC
GGGACCAGCTCCTTCGTATGGTGAAGGGCCTTCAACCAAAGCTTGTGACCCTGGTTGAGC
AGGATGCCAATACTAATACTGCTCCATTTCAGACAAGGTTAGTTATCTGATTGCCCAATT
CTATTGCGGCAGTAGTTATGGTTCTTTGTGGATTGGGTAATTTTTCGAATCCTTTGTACT
ACCTCTGTTTCTAAATATAAGACGTTTTGGCAGTTTAAATTGAACTGACAAAACTTCTTA
TATTTAGGAACAGAGGGTTAGATAGTAACTATGTCTTCCGTAGATTCTGTGTATCGACTC
TTGTGTTCTCTTACCACTGCTGAGCCCCTAAAAATACCTGAAACGTCTGGCTTTCCCAGG
TTCCGTGAGGTCTATGACTACTACTCCGCCCTTTTCGATTCACTGGACGCAACACTTCCA
AGGGAAAGTCCAGATAGAATGAATGTGGAAAGACAATGCCTTGCACGAGAAATTGTGAAC
ATCTTGGCTTGTGAAGGCCCTGATCGCGTGGAGAGGTAATTCCCAGTGCTTCTCTCCACT
CTTAAGTCATGCAAATTATTTTTGTTCTTCTTGGAAACTATGCGTACCGCAAACTGAATG
TGGCTGACAGTGAAGTTGTTTATGCTCCAGGTATGAAGTTGCTGGGAAATGGAGGGCGAG
AATGACGATGGCTGGATTCGCGCCATGCCCATTTAGCAGCAACGTCATCGGAGGAATAAG
ATCGCTATTGAGCTCGTACTGCGACAGGTACAAGTTTGAGGAGGACCATGGGGGACTTCA
CTTCGGCTGGGGAGAGAAAACGCTCATCGTCGCCTCTGCGTGGCAATAGATCGAGCTCGC
TGACTTGGGTTGCATTAGCACTGCTGTATTTTAGGAGCTTCTGGTGCAGAGATTGTAAAA
AGGGTGTGAACCGCAGAGGAGTTCTTGGCTGATCTATCTAATTTTAGGAGTCTGCTTGTC
AGAATAATTGAGTTTGGCTGATCGCCCGGGTGAACCATGTTGTTCTGCTGTAGCAACTGG
TCACACGAATGTGTTGTTGTATTCTGGGATAGAATCATGACATGTCGACTCTGCTCCATG
TATAAATCTATTTATGTTGCTAGAACATAATGTTGTGTCTGTTTGGGAACTAGAACATGC
AGTAATATATGCACAGTTTGGCCACAGGTTTCTATGTCTATCGAAACAATCATGTAAATA
CTTGCAAAAGGTCCATCCAGATAGTTCTTATAACCAATGGAGTAGTTGGCAGCAGTTTGG
CCACAGTTTTCTATCAAAAATGGTAGAAGAAAGGCTTTTATTTACCTTACAGAGTAATCT
TGTGAAAATTACAACAGCTTGATGTACAACATTTCGAAAACCATACATACACACATATGC
CCTACAGATAAATTCGTTGAAGTAATTTAGCTGACAAGTGACAACACTATAATCTCAAGA
ACCTGAATTCTTCCTATATTTGTTGTATGTGCTATAAAATATATCTTATCTTGAAGGTAA
TATATAAGCTCAATCTTATCTTCAAGGTAGGCTGTGGCGTGAATTCAACGAGCTATAATC
AGATCTCAAGAACCTGAATTCTTCACGGTCTATATTTGTTGTATGTGCTATAAAATATAT
CTTATCTTGAAGGTAAAGTATAAGCTCAATCTTATCTTCAAGGTAGGCTGTGCCGTGAAT
TCAATGAGCTATAATCAGAGCTAGGTCGCCTTTTGACCCGTTTAGTTGATTCCAAAAGTC
CAACAAGAGACGGGAGAGGATGCGGGACAGGGACATTCCTCGATCTGTACAGCCTCTTCA
GACTTGCATGCAAAGATTTCGATGATCCAATGACACACAGGCGGTCCATTTGACAATCTG
TTATTTCTACATTTTTGAGGCTTGAACTTTCGGTGGTGCCCATAGATATTGGCTCTATTA
TAGTGACAGGCTTTTCTGGTTGATCAGGCGCTACTGATATATTGTGTTGAACAGTAGGCA
AAGGTTGAACTGCAAATGCTTCTGGTACTGGTAGGGTTGGGGATGCTTTACACTGACAGG
AGGGGGGCACATCTCTAGCTTCGGCACACTGACAGGAGGGGGACACATCTCCAGCTTCCA
CACAGTCTTGTTGGGAAGCTGGGGCTGGCTTTGTGATCAAATCCATACCAGTATATGTTT
CAACATTTCGGCTGCTATCATGAGGCAAATCTTCCGGTACACATAATTTGGTTTGTTCAG
CTGCAGCAATGTACTGGTGGCATAACTCTTCTTTCATTATGTCAATCACTTGAGAACCAA
ATCTTGCTCTTCCAAACAATGTAATATCTGGTTCTTCAACCGGAGGGGATGGCACAAATT
GCAGTTCAAGTGTGCTGACATCAAAATCTGTGCATTCTTCACTGACAGAAGTTGGATGAT
CATCCTCAACAAAAGTTGAGGGATCTTCATCTGGTGGCGTGCAAGAAGCAAGCACCGATG
AGGGCGAGGATACTGACTTTTGAAGAGGATCCCTGAATATCTTCCACAATGGATCATCAG
TTGTCAATCGAGTCTTGAAACAACATTTCTTCACATAGCTCAGCTCCATGGCAAAGCATG
GGGGAGTTGTTGAGATGACCCATTGAGGTTGGAGGAGTTGCATCGCCTGCTCTAACTCAT
CGCGGGAAGAGTGAATGGAGAAACAGACATGCCAGATCCCAAAATCATCCTGCTGGGCTT
CTGTTAGGCTGGGTTTCTGGTTTCGACCACAGGCATACCACTGCGTTGAGGGGCGGATAA
ATAAAGGCTCTGGCTGAAGACTAGCCCTTGCCCCTTCAAGCTTTTTACTTGCATTATCAT
ACAGATGGTGGAACCCTACTATCTGCAGAAATAAATGGTTAATGCCAAGATAATAGAAAG
AAAACAAGTCGCTACTTTACATGCAATACAGATCAGACGAATTGGTTGAATCCAACTATC
TGCAGAGTTAACAGAGTTAGAACCAACAAAGTAAAAAAGAAAGAAAAGAAAGAGTACTCT
GTGACAAAACTCATAAGAACTATGACACGAATTAAGACTTGTACAACTCAAAATTGGTTA
CAAATTTTGTATTATTGTTTTCAACAACAGCTTTAGCTCAAGATTTCGGTACTGGCATTT
ATTCAATCATGCAAGTGTTCAGCAGTCCCGACTGGTTAGCGGTATGTGAATTAAAACAGA
AAGAATGTTAACACACCTGAAAGCGACAAGATGGATCATCAGTGATGATCTCAGGGGCTG
TGAGTGACAGCGCTTTAAAACAATCTGAATTCCTTCGCACGTCAACATAAATTTTTGATC
CAAAAGTCCTGGACACCTCAACTAGGATCTCTTCGTGACCAAGAAGATCACAAGCAAGAT
ATACAAAAGGTGCATCCGGATGCTTCCATATACAAGCTATAACCTGCATTCACTGAATCG
TTTCAAAATGGTGACTTCCCCGTTGTCATATCTACAGCCCCCCAGGCAATGATAAGCACT
TTTTTTGTGTGGCAATGACAAGCACATTTAAAACCTCAGAACAGAGGATAACCTGCTGAA
TTGCCAACTCCTTGCTCGGTAGCTTGAGGAAGCATTTGGAAAATGTGCAGTCCAAGAACA
CGAAGTCTAAACGGCAAACGTTTTCTTTCCCTTTCTTTGCTATGTATTTCAATGGCAAGT
TCTGAGCACAGTCTGGTGTAAGTCGGCAGTCGCCCGTGTGCAGTATGCTACCGAATTCAC
CCTCAAACAAGAACATAACTGCCCCTGAAATCACAGGGAACGACAACAGTCAGTCATGCC
AAAGGACAAATTCCCAATTTCCAGGATGCATTTTATGATAACACTATTATATAGCAAAAC
ATATGCTAGAGCTTGTTATTAATAGGGTTAAAGAAACTTGATTAGATGTGTTGTGCCAAA
TCTGGTAACATGAGGTCTGGTCATGCTTCAATCTACTGATGACACAGTTTTTCTGTTTGA
GGTTGATTTATCTGGTTCGAAAATATTCTTTCACAAGAGTGAAATATGTTGTTTGGGAGA
AGCTAATGAGGACATGGAACAGTATATAGAATCTTTACTTGTGTGGCGGTGCTGCCTACG
AAATATCTAGGGGTCCCCTACTAAAGAAAATATCAACAATAAGTAAAAGGTAGAGGGTAA
ACTGGGCACATGGCAGAGGAAGTTTCTCTCCGATGAGGGGAAACTATAACTGCTTAGATC
AAGTCTATATTTGAATTATCTAATGTTTTTTTTTTCAGAAAGAAACTGTTGTGGCAAGAC
AGGAAGAGGGGACAGAAACATCAGCTGGTAAATTGTAATGTTGGAGATCATATCATATCA
TCTTTTTGTGCATTGTCCCATCGTTAGACATGCCTGGGGTGCACCAAAATGTGCTCTGGA
TATTGACATTGAGATAAGTTCAGTAGCAAATTTATATGGTTGGGTGCTAAATTTGCAAGG
GTCTCAAAGGGGTAGAAGGAAGGACGCATTTGGAGTAGAAGGAAGTTGAGTCATACCATA
CAGACCGACAAGCAGAGCAAACAAGGAGAAACAGAAGTTTACCAGGGCAGTGGTTGGCAT
CGTACGCGGTGACGGAGAAGGCGCCGGCGGGGTCATCCACCTCGATCGTCCTCCCCGCCT
CGACCTCCACGAACTCCCCCTGGTCCAGCTGCAACACCACACCCACGCCACCGCGCTCGA
AACCTCAGTTCACCGGAGCGGAAATCAGAAGCCACGGCTACCTGTCTCGGAGAGGGGATG
ACGCACCACAGCCCGTACCTGGGGAAAGTGGCGGAGGGCGAGGGAGAGGGTGAGGCGGGT
GGCGTAGACGGCGCCCCCTCCTCCGGGGCCGGCCCCGGCGGCGCCGACGAGGTGGTCCCG
GTGCGCGTGGGTGAGGAAGCGGTGGCGCCGGGGGCGGGAGGAGGGGCCCCACGTGTCCAC
GGCGAAGGGGAGCCCCCGCGGCATCTCTATCGGCATCCTCCCCGCAGCTTTGTGGAATTG
CAGCCGCTTCCTTCCTTCCTCGGGAGCGCGCCGCTTCGTTGGGTTGGGAGTTGGTTGCGT
CGGTTTTATATATTCCTTCCTCCAATGGGAAGGGTGGCTCCTTCCCCAGGAAGGAAGATG
AAATGGGTTCGTGGGTTCGGGTTCTGACTAACCAGACCTGAGCCCAGAACCCGCTAGCTT
GCCGCCTTTGGTAAGTTTGTATGTTGGTTGGCTGGCACTGACAGGTGGGCCCACATGTCA
GTGATCTCTCTTTTGCCCACCAGGGCTTTGGGCCTTCCCGTTCCACTTCCTCTGGGCCTA
ACAACAAACCATTCTCATTTCAGTGAGAGCTATCTGGCCAGCGCTCTTTCCGGATCCTCT
TAACAAGCATTTTCACACGCCATCACTTGACGTGTTCTCAGCCGCTGTCACGTGTCTATT
TTGAACGTTTATTTTGGATTTTGTATTATTATTTTTTCGCACGCGTTTTCAGTTTTTTAG
ATTATTTATTTATTTCTTTATTGATGTTTTGGTTTTTCATCGGTCTTTCTTAGCTTTTCG
ATAAAAAAATTTATGAAAAAAAACACATTTTTTGGTTTTCGTCAGAGGCACGGTTTTGCC
TTCGCGAGAGGCGCGGCCATGCGCCTCGGAAACGGAAAAAAACAACGTTTTCTGTTGTTT
TTTTTCAAGCGAAAGGGTTTTGCTTTCACGAGAGGCACGGTTTTGCCTTCGCGAGTCAGG
ATGAAAAAAAACGTTTTTTTCGTGAGAGGCACGGTTTTGCTTCCGCGAGAGGAACGATTT
TGCCTCCATGAGAGGTGTCATGGGAATGAACCTGATAGTAGAGGTGTAGGGTACGAATGG
AGAGGGCAGAGTCCTATCTACGGCAAGCTTGTACGCAAGATGGATGAGTTCAGGTCCCTC
TCGTAGAGGTAATAGTCCAACGTCTCAGTGCTGGGGAGCTCTTGCGGTGTGGAATGCATG
TTACAGAGGGTGCGAACCCTTGTGCCAGAGGGGAGGGGTGGCTTATAGAGAGTGCGCTAC
CCCTCATCAAGGCCTAACATCTAAGGGTTTGATCAATAAAGTTTAAAGGTGTACGTTACC
GATAACGTATGTATGTAATTAATGCTATTCATGATGATCAGCTGAACGCTCGCCTGTTGG
CCTCCCCGGAGTGACTTTTGGTCTTCTACGTCGACTGGTGCCTTTCGAGTGGAAGTTGGT
TGTTGAGTGAAGGGCAACATCTTTCGAGTGACTACTTACCGAGTGACTTTTTAGACGCCA
TGGCTTTTCGGTCGGAATCTTCTTCGTTCCAGTTAATAATGAGGTACCCTTGGGTAGGAC
ACTTAGGTCAGGCTTGTGACCCTATGCTAGATACATATCTCCATCAAGAGGCACCCTCGT
GGCTCTCGAAAGTGGAAAAAACGCGGTTTTTCTTGCGAGAGGGCATGGTTTTGTTTCCGC
AAGAGCCACGGTCGCGGCTCTCGAAAAAGAACACGGAAAAACATGTTTTCTGTTTTTTCC
CTATCGCGTGAGGTACAGTCTTTTTGGTCCGGTTTTTTCGTGAAAAAAATTCATTGAAAC
TCATCAATATGGAATCTAGTTTTGAAGATTTCGACCCAAAAAACTCAACGATGAAAACTG
TTTGAGATTTAGACGTACGGTTGAAAATACGAATATATGAATCTACGAAAAATAACACAC
ATGCGATGCGCCACTTATCGCAACCTGAGAAGATACTTATCGCAACCTGAGAAGATGAAA
GTGATCTTTAATCAAGTGAGAGTGATCTCTGATAGATGTACTCTTCAATTAGTGATTTCA
TATTTTAATTGTATTGTAGGATTCATATGTTCCTCAAAAACAAAAATTGTAGGATCCATA
TATAACTCAGCCTAGTGGAATGGTTGCAATTGGTATCTTTAAGCATCTTCTGAGATTTTG
AGATGAGAGCACAAGTTCTCAAAAAAAAAAAAAGAGATTACTACAACACCAGTTGCANGT
ACATGTAAAGGTTACTTGACGCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAGGATGGGTTCCAGGGCGGCAACCTGTGATAGCAAGGATGGACCTCGTT
CTTTTCTCGTTTGTTTTCGT
