morexGenes - Barley RNA-seq Database

Contig contig_138374
Source Contig contig_138374
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_138374 (5959 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_138374

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6947	2	1935 bp	MLOC_6947.1	Available	Available	LOC_Os02g07180.1, FRAME:+3, EVALUE:4e-106, 13102.m00809 protein expressed protein
CDS Structure of MLOC_6947

Contig Sequence (5959 bp)

>contig_138374 5959 assembly3_WGSMorex_rbca.fasta
AAGTTATGCGAGTGCTCCTCCGATGATGCGTGAGTAGTTCATATCAGACATACGGATCCG
TAGGCAGTAGCTAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTGGA
GATCCATATGATGTAACACCGTGTACAATGGATGAAGGCTCCGCATCTCGGGTCCTATGC
CCTGGGGCTGGCACTTTGGTAACCTACTGTGGATTATCTTTGGCTTGCCCGGCTACCGAA
GCCTTCCTTGGTACACGGTGTTCCATCCTCTCCTCTTCCATGGTACCCCATTTCCACCAC
GGGGCTTGCACCTTGTCTTCGCTCCCTCATATTCTCGTCTATTTCACATGCCATATGAGG
AAATGGTTGTGCAAACCCAGGATTGCCGGCCACCACCCAAGGCAGCATCGACTTTCCCCT
CGGGCTCACGCGACGTCGTACGGTGTGATGGTTGCACCACGAACTCCAGTTCGAGCAGCA
CTGCTTAGCTTATTGGCATCAAGGCCAAGGCCAGGAGGAACAAGATTAGCCGCCATTCAG
CCTAAAGATTCCGATTCCGCATCTCGTTGAAATGGAGTTATGACGCTTTCGATGTATAGG
AGCAACCATGTTGTGGATGTTAAAAGATATATATTTAAGAGTATAGCACAAACTCTTGTG
AAACCTCTTAAAAGATTTATATTTAAGAATATAGGGAGTATAGCACAAACCCTTTTCTAG
GCTATTACAGTGAGTTTATCAATGTACGAACAAAATTTGTTAAACTGAATTGTGGGGCCC
TCCTGTTAAGGAGAGGTCCCTTCAAAAATAGGTGTATGCTGCTTGATGTGGCGTGCACAC
GGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTTTGTGCTCACCACGCAGCTGCCTG
ATCTCCAACACCGCAGCTGACAGTCTACAAGTAGCCATCAGCTTAAGCTCAACTCCACTA
AGCAGGCGAGGTGGGACAAATAACCATCAAGCCTCATCCTTCAGCCAGCGTCTCGCTGCA
CGGCAGCACATTCGGCCTCTACGCTCGGCCCAAACGCCCTCCGAAAGTCCGAATTCCGAA
AGCCAGTGCCCAACTCGTTTTCCACCCAACGCCAACGGCACAAAAAAGGCCCACGACGCG
AGCCGACCGTCCTGCTGCCGTCTGCGTCGTCTGCGGCGTCCGTGTCTCCGTTTCGAATTT
CCATTTCAAATCTCGCCGCCTCCTCTTCTCCCCCCCTGCTCCACCCCTTCCATTTCCGAC
AATCCCTCCCCGGGATCCCGCCGCACCAGCCCCCAGACCCTCGACCGCGTCGGCGGCGGC
GGCGGCGACCGAGCGCGCACGCCGCAGGATTCTCTCGGCTACGCCATGGGCTGCTTCCTC
TCATGCTTCCGCGGCCGCCCCGACCCTGCCGGCCGCGGCCTCCACGTACGCGCACCCTCC
CGTGATCTAGTCTTCCCTAGACCTCTCGTTCCCGATCCGCGTGGCGATGATCTGTTTTTT
GTGGCTGTTTCTCTGGTGCAGGATCCGCTCGTGCGCAAGACCAGGCTCGGGGACGCCTTC
CTGGACGACCACCACGACGACGGCACGCCGAGTGAGTTTTTGAATCTTCCGTTGCGCCGA
TCGGATCGGATCCGGTGGGTAGACGGCAGTGATGGACCCCTGATTTCGTATTGTCTTGTG
TTTCAGAGCTTGAAGCGAGCGGGACGCGGAAGGGGGACCTCGGGAACGACGGAGGGGTCG
ACGACGACCTCAGGCGAGAGGTATCGAGACTGCAAAGCGCTTTCCTGTTTATGTGATTTT
TTCTACTGTGTGCAACTCCGTCGGTATTCAGGCCGTGTTACCGGTGGATAGCAGCGAATT
TTTTTTGAATTGGTTGATGCTTACAGTCCGAAGTCATCTGTTTGACTTTGACACATCTGC
ACTGTCGCTGTGGTCTTCACGGATAGACTATCACGTCTGCACTACACTATTCTCTGCCTC
GTGTTGCCTGCTATGTCCAGATGAACTTTGTAGTCAGAAAGTTGTTCTGCGATTGCCAAG
GGTCCTTCTAGAATGGAAAGTGTGCTGCAGCCCTGGCAGTAAAATGTAGAAAAGCTGCAA
GATTTCCCTTCCATGGGTTCATTGGTTTCAGGAATGTATGTGGCAGTTGTCTTTTTTTGT
ATTTAACTTTTAAATCTTAAGGTGGTGTTTCTTTACCCAGGGACTAGACTAAAAAGTCCC
NNNNNNNNNNNNNNNNAAGAAACAGGAGGGACTTTTCCTTAAGGGACTAGAAGAAGACTC
TCTTGGAGGGACCTTTTTCTTTAGTCCCTGGGACTAAAAAAAAGTCTAGTCCCTTGGAAA
GAAACACCACCTAAATCCATCTCGGCTATGACATGTTCAGTTGATGTTACTTCTGTCATG
TGGGCTAACTACTATGCTCCGCATTGATCAGGGTGATTATTTAATGGAATGTGTAAAGGA
TGCACCTGTAGCAACAAAAATATCATCTGCCTTTTAAATGCCTTTTAACCGTTTGCTTGT
GGAGACGCATCTAGTTGTTGGCCGAATAGAACACTATTTGCAGATTTGAAACCTTTTGCT
TAGACTATTTTCAGTGGATGTGCCGTAAAAATTTCCACGGCTAGTACACTGCAAGTCTAG
CGGATGCTAGTTATCACATTTGCTGAAGTCAATGTGCACTGATGTCAACATTAAATATTG
ACTTTTTAATCCCATCTGAATTTTTAGACTTTGCAAAAGTATATTGAAAGATCATGCTGT
ACAATGCATAACCTTGTAAAGATTTTGTCGTATATGTCGCATAGGTAGTTATGTATAATA
GAGTTATCAATTAGTGTTCAAATGTATTGCTTGCCATTCCCCATCAGGCTAGGGCTTTGC
TGAAGTGAGTGTGCACGGTCAAGACTAAATCTTGATCTTTTTTAGTCCCACTTGAACGTT
TAGTCTTTGCAAAATTTACATCAAAGACCGTGCTATACAATGTACAACCTCGTAAGGGTT
TTTCGTATGCCTTGTATATGTAGTTCAGAACAATATAATGATTAGTTATTGTTGAAATAT
ATTGCGCGTCTTTTCCACATATGCATTTGGGCAAGGTTGTTATATGCATGCAACTTAATG
CGCTATCATAGCCAATAGGTCATCATTTTAAGTTTTCAACATGCAGCCGACGCACGATTT
CTAAAAATAATTGTAACCTACATCGATCTCAAGTCCAAGGCCAAGAGGAGCCTAGACGTG
AGAGGAAATGGCGAAATATATTGTATGCCTTTCTCCATCAGCTTAAACTCTGGAAAGGTG
GTTAGGTCCATGCAATTCAATAACTAGGATTATAATCTTCAGATATAGGTCATGCCTTAC
TGGTTGTCCGATTTCAGATCCATGCCGTTCAAAGATTAGGATTATAATCTTCAGATATAG
TCCAAGTCTTACTGGTTGTCAGACTTTGTCATAGTTAGCGCCAACCAATTAACATGAAAA
AGTTCTGTAATAGTCATTTGATTGATATTTCTACATTTATCTCTGTACTGCATACTGATA
GATATTGTTACACCAAGTGTTGCAAGTCTGTGTTATCTTTTAAAACTTAGCACTCTAAAT
TATATGAATAAATTCTGACGAGGTTTTCATGGAATTCCACTATACCAGGCAAATTATCTT
AAATCCTGCGGCGCAATATCAGAAACCCCTCCAGAAATTCTGAAAGCATCATATGAAGTC
AAAGAGGAAGAAATTAATGAGGTATTGTCGTATTGAATTTATCTTTGTGATCTTCTTTTC
ATAAAAAATCGCCGTCTTGACATCTATTTTTCTTACACTCAGTGCAATGAGACGTCCAAC
AACGCAGAGGAGATTAAAGGGGCCCTGGTGTCTGAAAATAAGGATTACTTATCTGAAGGG
TAACTAGCTACTACCCTCCATCTCAGTGAATGTTTTTCTTTTGTTGAACAATATCATCAT
GAATGCTGCGATCATGTAAACTACTCCTAGTTAACATGATTACTACTGTTCGCTGGTCTG
AGAACCAATTTCGCTGTTTTTTCCTTCCAACACAGGTTCAGCTCCGACGGGCACGACGAT
GATGGTGCTTTGAAGCATGACCAGGACACTGATGAAGGCACTGACGACCATGTCACCGAG
GCTGATTCAGCGCCGAGATCATCGTCGCAGGAGAGGTCTTCAGGCCAGAGCATCAGGAAC
CAGAAGCTCGACCCCAGCGATTCACCTTTCCCGACCCCATTGGCTCTCAGAGACGACATC
CAGACTCCTGGATTCACCACACTCCAGGGGAACTTCAAGCCCGGGAAGCGCGGGAGGGCG
AGCAAGCAGTTCCTGTACCCGGTCCTGAGGCCGATCGAGAACAAGCTGCAGTGGACGGAG
CTTAGAGACGAGTCCTCCTCCTCCCCCGTGGTCGCCTCTCACCCTCCCAAGAGAAGGTAC
CTCTCCGCAGATTCCACAGAGAAGCCTCATCATCAGCCAACCCTCCCAGGCTCAGTGAAC
GAAAGCACAGAGATGTCATCAGAGTCTGCGCCATTCTTGTTCCATGCCGGCAGGAAAGAG
CAGCAAGCTCAAGAGGCGACGTTTCCACAGGATGAGAATGATAACCAACAGCAGCAGCAG
CAGCAGCAGCTTGTGGGTGGCGTCGTCGGAGAGCTGCTGAACAAGAGCTCGGAGAACGGG
AAGCATGGCGTGGCTAGCCTGTCCTGCTGGCTCAAGGCCTCGTGTGCGGATGGCGGGCAT
GGTGAGGGCCAGACTGGAAGGCAGCTGGGCTTCGAGGGGGTCGATCTCAGTGACGTGCCC
ATCTTTGTGGCCTCTGGGCTGAACTGGGACGACGGTGAGAACCACCCGACCCCGATGCTG
CCCAAGGCCTGGGACGGCAATGGGATCCCCAACACCACCACCAAGTACAAAGAGGTATGC
ATTTTCTTCCTCCAATGTTTCTCACTGCCGCAGTTATCTGTGTAACTTACTGCGGTTCGT
GCTTGGATGTTAATAGGACCAGAGGGTTAATTGGCACGCCACGCCGTTTGAGGAGAGGCT
GATGAAAGTTTTGTCCGATGAGAAACCACACCACCAGAGGTACGCCGCGCTCCTGCATTA
TATTTTCATGTTAACGCTTTCAGCAGATATATGTCAGAGGAGTTAACATGGACGCGATGA
ATGCCAGGAAAATCAGCGGGAAGCTGATCCACCTGGAGGAGGACGCGGTGGAGAGCCCCG
CAAGCGCAACTGCTTCCTCGTGATCTGAAGCTGAGAGTGTCCACCAAGTGCTGGCCAACC
TCAAGCGGCGTGTCTGAAGCTGAACTGCTACTATCACATTCTTGTCCGCTGAAGACTTTT
GCTTGCGCGCTCCTGCATACAAACTTTCTTTGCACATCACCTGCTGATTGATGATGCTGG
GTATACGAACAATAAAGAATAAGAAAAACTCTGCTTCGCGTTCTCCCTTCTCCGCTTATG
GCTGGTCCTGCGATGCGGATGCCGTTGGGTCTCTGCCGAACAGAGCAGGGTGGTGGGTGC
GGTTTTAAATTGGGGCAATAAAAGTTTTTCACATCTCTCTCGGGCAGAGGCCTGGATTCG
TCACCATGGACCATGGTCCCATCCCCACAGTAACCGAAGTTACTGAAGGTCCTAGAGGGT
GAAAGGGTCCCTGACAAGTAGATTTGCGATGCATGTGAGACGATGATCCGTATCCTGACG
GTGAGATTCCTCCCGGATGGACGCTAGCGTTGCGGCAGGGCACCCATTTCCAGCCGGGAA
CTAAACCAAACCAAACCATGGGCGGCAAATCCCCCGGTCTGTAAACGACGGCAAAATTGA
TAAATCTAACCCTGGGCTGAAAGAATTCGAAAAGTGAACCCATGAAGAAAAAAATTCACC
GAGCTGACCCTTTCGTGTAACGCCCGACACCTAGGCGTCGCCCCGTCGGGGGGGCGGGGG
CGGGGGCCGCTCCGGGCCG